Miyakogusa Predicted Gene
- Lj2g3v1984680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1984680.1 tr|G8A0I2|G8A0I2_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_103s0066 PE=4 SV=1,48.43,0,seg,NULL; F_box_assoc_1:
F-box protein interaction domain,F-box associated interaction domain;
FBA_1,gene.g42547.t1.1
(379 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 74 1e-13
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 74 1e-13
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 68 9e-12
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 56 3e-08
AT1G54640.1 | Symbols: | F-box family protein-related | chr1:20... 52 9e-07
AT3G22650.1 | Symbols: ATSFL61, SFL61, CEG | F-box and associate... 50 3e-06
AT5G41490.1 | Symbols: | F-box associated ubiquitination effect... 50 3e-06
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 49 8e-06
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 35/269 (13%)
Query: 114 HGTLCLHRNRGDIVLWNPSTEEFKIIPPSPIESLPYMDILLH--LHGFSYDHVTDDYKVI 171
+G + L + D+ ++NPST + +PPS I+ LP +G YD V+DDYKV+
Sbjct: 96 NGLIGLSNSPTDLAVFNPSTRQIHRLPPSSID-LPDGSSTRGYVFYGLGYDSVSDDYKVV 154
Query: 172 RQVSFLQYLTDFEGDWDDVPNCPDPYPDPLWEIYSLRSNSWRKLD-----IEMHSAYGND 226
R V F+ D +D C PY +++SL+ NSW++++ I++ +
Sbjct: 155 RMVQ-------FKIDSEDELGCSFPYE---VKVFSLKKNSWKRIESVASSIQLLFYFYYH 204
Query: 227 SIYMNGV-------CHW-LCRPNQYIDEGHLLSFNFSDESSFTTALPLDLCDMMI-INRP 277
+Y G HW L R I ++ F+ + E P + + + I
Sbjct: 205 LLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMD 264
Query: 278 V-VLNGSIAVISNHCETTIFHITVLGEVGVKESWMKLFTVGPLPCVEY------LIGTGK 330
+ VL+G + ++ N+ ++ + + ++ E V++SW K+FTV V+ L+ +
Sbjct: 265 IGVLDGCLCLMCNYDQSYV-DVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKD 323
Query: 331 KGNIFFTKKDEEVVWFDLGTMMIQEIGLK 359
K + + ++VWFDL + + + +K
Sbjct: 324 KKKVLLELNNTKLVWFDLESKKMSTLRIK 352
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 35/269 (13%)
Query: 114 HGTLCLHRNRGDIVLWNPSTEEFKIIPPSPIESLPYMDILLH--LHGFSYDHVTDDYKVI 171
+G + L + D+ ++NPST + +PPS I+ LP +G YD V+DDYKV+
Sbjct: 96 NGLIGLSNSPTDLAVFNPSTRQIHRLPPSSID-LPDGSSTRGYVFYGLGYDSVSDDYKVV 154
Query: 172 RQVSFLQYLTDFEGDWDDVPNCPDPYPDPLWEIYSLRSNSWRKLD-----IEMHSAYGND 226
R V F+ D +D C PY +++SL+ NSW++++ I++ +
Sbjct: 155 RMVQ-------FKIDSEDELGCSFPYE---VKVFSLKKNSWKRIESVASSIQLLFYFYYH 204
Query: 227 SIYMNGV-------CHW-LCRPNQYIDEGHLLSFNFSDESSFTTALPLDLCDMMI-INRP 277
+Y G HW L R I ++ F+ + E P + + + I
Sbjct: 205 LLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMD 264
Query: 278 V-VLNGSIAVISNHCETTIFHITVLGEVGVKESWMKLFTVGPLPCVEY------LIGTGK 330
+ VL+G + ++ N+ ++ + + ++ E V++SW K+FTV V+ L+ +
Sbjct: 265 IGVLDGCLCLMCNYDQSYV-DVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKD 323
Query: 331 KGNIFFTKKDEEVVWFDLGTMMIQEIGLK 359
K + + ++VWFDL + + + +K
Sbjct: 324 KKKVLLELNNTKLVWFDLESKKMSTLRIK 352
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 130/302 (43%), Gaps = 50/302 (16%)
Query: 69 ADHTHANSSAMYLLSGESFQNRLKLHWPPPFQEDSRYVSILNSGIHGTLCLHRNRGDIVL 128
DH + + M L+ +S++ +V I+ S +G +C+ G + L
Sbjct: 140 GDHLYDDRRVMLKLNAKSYRRN--------------WVEIVGSS-NGLVCISPGEGAVFL 184
Query: 129 WNPSTEEFKIIPPS-PIESLPYMDILLHLHGFSYDHVTDDYKVIRQVSFLQYLTDFEGDW 187
+NP+T + K +P + +S+ Y +GF +D +TDDYK+++ V+ + + D
Sbjct: 185 YNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDA---- 240
Query: 188 DDVPNCPDPYPDPLWEIYSLRSNSWRK---LDIEMHSAYGNDSIYMNGVCHWL---CRPN 241
+YSL+++SWR+ L+ E + ++ NG HW+ R N
Sbjct: 241 ---------------SVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHN 285
Query: 242 QYIDEGHLLSFNFSDESSFTTALP--LDLCDMMIINRPV-VLNGSIAVISNHCETTIFHI 298
Q + +++F+ E +P + C N V LNG + V+ N C I
Sbjct: 286 QRV----VVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV-NSCYDVHDDI 340
Query: 299 TVLGEVGVKESWMKLFTVGPLPCVEYLIGTGKKGNIFFTKKDEEVVWFDLGTMMIQEIGL 358
V+ E G +SW ++ ++ L T + + D ++V ++ T +G+
Sbjct: 341 WVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLL-ELDGDLVLYNFETNASSNLGI 399
Query: 359 KG 360
G
Sbjct: 400 CG 401
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 126/302 (41%), Gaps = 50/302 (16%)
Query: 96 PPPFQEDSRYVSILNSGIHGTLCLHRNRGDIVLWNPSTEEFKIIPPSPIESLPYMDILLH 155
P P Q + + S +G + L + D+ ++NPST + +P PI+ P DI
Sbjct: 80 PHPLQAGG-FTEVFGS-FNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPID-FPERDITRE 136
Query: 156 --LHGFSYDHVTDDYKVIRQVSFLQYLTDFEGDWDDVPNCPDPYPDPL-WEIYSLRSNSW 212
+G YD V DD+KV+R V + +P P+ +++SL+ NSW
Sbjct: 137 YVFYGLGYDSVGDDFKVVRIVQC------------KLKEGKKKFPCPVEVKVFSLKKNSW 184
Query: 213 RKLDIEM---------------HSAYGNDSIYMNGVCHW-LCRPNQYIDEGHLLSFNFSD 256
+++ + YG + +N HW L R I ++ ++ +
Sbjct: 185 KRVCLMFEFQILWISYYYHLLPRRGYG---VVVNNHLHWILPRRQGVIAFNAIIKYDLAS 241
Query: 257 ESSFTTALPLDLC--DMMIINRPVVLNGSIAVISNHCETTIFHITVLGEVGVKESWMKLF 314
+ + P +L D M I VL+G + ++ + E + + VL E +SW KL+
Sbjct: 242 DDIGVLSFPQELYIEDNMDIG---VLDGCVCLMC-YDEYSHVDVWVLKEYEDYKSWTKLY 297
Query: 315 TVGPLPCVEY------LIGTGKKGNIFFTKKD-EEVVWFDLGTMMIQEIGLKGRSPCTQM 367
V VE LI + + I + ++WFDL + + G++ S T
Sbjct: 298 RVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTAGIECDSSFTAD 357
Query: 368 VI 369
++
Sbjct: 358 IL 359
>AT1G54640.1 | Symbols: | F-box family protein-related |
chr1:20403892-20404807 REVERSE LENGTH=245
Length = 245
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 91 LKLHWPPPFQEDSRYVSILNSGIHGTLCLH-RNRGDIVLWNPSTEEFKIIPPSPIESLPY 149
LKL P ++ V IL+ G +CL + D+ +W P +EEFK IP +
Sbjct: 28 LKLDLPFTLPAETEPVCILHC--RGMMCLTLKENNDLAIWKPGSEEFKRIP------MVI 79
Query: 150 MDILLHLHGFSYDHVTDDYKVIRQVSFLQYLTDFE 184
+L GF YD +++DYK++ ++ F Y+ F+
Sbjct: 80 PGQTTNLLGFGYDRISNDYKIVTKIGFKTYIYAFK 114
>AT3G22650.1 | Symbols: ATSFL61, SFL61, CEG | F-box and associated
interaction domains-containing protein |
chr3:8014809-8015960 FORWARD LENGTH=372
Length = 372
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 98 PFQEDSRYVSILNSGIHGT---LCLHRNRGD----IVLWNPSTEEFKIIPPSPIESLPYM 150
P ++ V+ +++ +H LC +N + +WNP K I P S
Sbjct: 80 PIPQEFDNVAQISTMVHCDGLLLCRCKNERSRSYKLAVWNPFLSRVKWIEPMDFYSSN-- 137
Query: 151 DILLHLHGFSYDHVT-DDYKVIRQVSFLQYLTDFEGDWDDVPNCPDPYPDPLWEIYSLRS 209
+GF YD+V D+YK++R F+G+ +D Y +P +IY +S
Sbjct: 138 ----DFYGFGYDNVCRDEYKLLRI---------FDGEIEDESEIAGSY-EPKIQIYDFKS 183
Query: 210 NSWRKLDIEMHSAYGNDSIYMNGVCHWLCRPNQYIDEGHLLSFNFSDES 258
+SWR +D S GN M + HW RP +I SF+FS E+
Sbjct: 184 DSWRIVDDTRVSVKGN----MYWIAHWNNRPEIFIQ-----SFDFSTET 223
>AT5G41490.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:16600445-16601608 FORWARD
LENGTH=387
Length = 387
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 28/159 (17%)
Query: 117 LCLHRNRGDIVLWNPSTEEFKII------PPSPIESLPYMDILLHLHGFSYDHVTDDYKV 170
LC ++ +V+WNP + + + + PPSP + F Y +D
Sbjct: 109 LCFLKDHTRVVVWNPYSGQTRWVKLRYPHPPSPSK----------WDWFRYALGYEDKGS 158
Query: 171 IRQVSFLQYLTDFEGDWDDVPNCPDPYPDPLWEIYSLRSNSWRKLDIEMHS--AYGNDSI 228
R V FL++L D +P P+ + +EIY S+ W LD+ HS Y + +
Sbjct: 159 CRSVKFLRFL-------DYLPEEPEN-QNVCYEIYDFDSDLWTTLDVTSHSWICYSSCGV 210
Query: 229 YMNGVCHW-LCRPNQYIDEGHLLSFNFSDESSFTTALPL 266
++ G +W + + + + H++ F+F+ E SF LPL
Sbjct: 211 FLKGNAYWPVVKSSSEANIDHIIYFDFTRE-SFGPPLPL 248
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE LENGTH=360
Length = 360
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 134/347 (38%), Gaps = 57/347 (16%)
Query: 7 VPDEVAFXXXXXXXXXXXXRFICIHKSFSLLLEDSYFMTTFRTNFISKXXXXXXXXXXXX 66
+P+E+A RF C+ K++ L+ D F T+R
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRD----------------M 48
Query: 67 XQADHTHANSSAMYLLSGESFQNRLKLHWPPPFQEDSRYVSILNSGIHGTLCLHRNRGDI 126
A Y+L E + P + S GTLC+ +
Sbjct: 49 SPAKFVSFYDKNFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNHTL 108
Query: 127 VLWNPSTEEFKIIPPSPIESLPYMDILLHLHGFSYDHVTDDYKVIRQVSFLQYLTDFEGD 186
++WNP +++FKI+P I Y D ++ GF YD V DDYKV V+F+ L
Sbjct: 109 MVWNPFSKQFKIVPNPGI----YQDS--NILGFGYDPVHDDYKV---VTFIDRL------ 153
Query: 187 WDDVPNCPDPYPDPLWEIYSLRSNSW-RKLDIEMHSAYGND--SIYMNGVCHWLCRPNQY 243
DV ++ R+ SW L I + D +++ +W+ +
Sbjct: 154 --DVSTA---------HVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWIAYRSS- 201
Query: 244 IDEGHLLSFNFSDESSFTTALPLDLCDMMIINRPVVLNGSIAVISNH--CETTIFHITVL 301
+ +L FN S LPL + + + + + + I+ + C+ I I+V+
Sbjct: 202 -ADRFILCFNLSTHE--YRKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKEI-RISVM 257
Query: 302 GEVGVKESWMKL--FTVGPLPCVEYLIGTGKKGNIFFTKKDEEVVWF 346
+ G SW K+ ++ V+ I + + FT+K++ VV F
Sbjct: 258 EKTG---SWSKIISLSMSSFISVQDRIYDYQVEFVSFTRKNDLVVTF 301