Miyakogusa Predicted Gene

Lj2g3v1984620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984620.1 Non Chatacterized Hit- tr|C0JP22|C0JP22_LOTJA
Putative basic helix-loop-helix protein BHLH17 OS=Lotu,95.29,0,no
description,Helix-loop-helix domain; seg,NULL; HLH, helix-loop-helix
DNA-binding domain,Helix-loo,CUFF.38202.1
         (366 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   157   8e-39
AT2G22750.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   143   2e-34
AT2G22750.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   139   3e-33
AT2G22760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   137   9e-33
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-...   116   2e-26
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL...    58   1e-08
AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    56   5e-08
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran...    55   7e-08
AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    54   1e-07
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |...    54   2e-07
AT1G01260.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   2e-07
AT1G01260.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   2e-07
AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   2e-07
AT4G16430.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   8e-07

>AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:17796362-17797647 REVERSE
           LENGTH=328
          Length = 328

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/278 (36%), Positives = 151/278 (54%), Gaps = 23/278 (8%)

Query: 87  ETCFERPAKQQKTKHVLPDQXXXXXXXXXXXQILSFENTHLYGLDCSLNPNLQNEGVSVS 146
           ET +  P     + H+ P+            +ILSFE+     ++   +P   N   S+ 
Sbjct: 64  ETTYISP-----SSHLPPNSKPHHIHRHSSSRILSFEDYGSNDMEHEYSPTYLN---SIF 115

Query: 147 TPQLRNVNFPAQ-----NRKGSTQNQNFETITNPQGKGSKKSHGQDHIIAERRRREKLSQ 201
           +P+L     P Q     NRKG+ + Q F            +S+ QDHIIAER+RREKL+Q
Sbjct: 116 SPKLEAQVQPHQKSDEFNRKGTKRAQPF---------SRNQSNAQDHIIAERKRREKLTQ 166

Query: 202 SXXXXXXXXPGLKKMDKASVLGDAIKYXXXXXXXXXXXXXQNKNRAMESVVVVNKPQIXX 261
                    PGLKKMDKASVLGDA+K+             Q K R +ES+V+V K ++  
Sbjct: 167 RFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLIL 226

Query: 262 XXXXXXXXXXGTIIGSEEALPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVV 321
                          S+  LP +E R S++DVL+++ C+KQKG L KI+ EI+ LH+ + 
Sbjct: 227 DDNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILIT 286

Query: 322 NSSVLPFGDSILDITIVAQMGAEYNLTINELVKNLRVA 359
           NSSVL FG + LDITI+A+  +++++T+ ++VK+LR A
Sbjct: 287 NSSVLNFGPT-LDITIIAKKESDFDMTLMDVVKSLRSA 323


>AT2G22750.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:9672145-9673624 FORWARD
           LENGTH=305
          Length = 305

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 150/280 (53%), Gaps = 31/280 (11%)

Query: 91  ERPAKQQKTKHVLPD------QXXXXXXXXXXXQILSFENTHLYGLDCSLNPNLQNEGVS 144
           ERP+K  KT H+ P+                  +ILSFE T L+ ++ + +PNL      
Sbjct: 35  ERPSKILKTTHISPNLHPFSSSNPPPPKHQPSSRILSFEKTGLHVMNHN-SPNL------ 87

Query: 145 VSTPQLRNVNFPAQNR-----KGSTQNQNFETITNPQGKGSKKSHGQDHIIAERRRREKL 199
           + +P+   +  P   +     +G+ + Q   ++T  Q      S+ QDHI+AER+RREKL
Sbjct: 88  IFSPKDEEIGLPEHKKAELIIRGTKRAQ---SLTRSQ------SNAQDHILAERKRREKL 138

Query: 200 SQSXXXXXXXXPGLKKMDKASVLGDAIKYXXXXXXXXXXXXXQNKNRAMESVVVVNKPQI 259
           +Q         PGLKKMDKASVLGDAIK+             Q K + MESVV+V K  +
Sbjct: 139 TQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSL 198

Query: 260 XXXXX---XXXXXXXGTIIGSEEALPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNL 316
                          G    S   LP +E RVS KDVL+++ C+KQKG ++KI+ EI+ L
Sbjct: 199 VLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKL 258

Query: 317 HLFVVNSSVLPFGDSILDITIVAQMGAEYNLTINELVKNL 356
            L + NS+VLPFG +  DI+I+AQ    +++ I ++VKNL
Sbjct: 259 GLSITNSNVLPFGPT-FDISIIAQKNNNFDMKIEDVVKNL 297


>AT2G22750.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:9672145-9673624 FORWARD
           LENGTH=304
          Length = 304

 Score =  139 bits (351), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 150/280 (53%), Gaps = 32/280 (11%)

Query: 91  ERPAKQQKTKHVLPD------QXXXXXXXXXXXQILSFENTHLYGLDCSLNPNLQNEGVS 144
           ERP+K  KT H+ P+                  +ILSFE T L+ ++ + +PNL      
Sbjct: 35  ERPSKILKTTHISPNLHPFSSSNPPPPKHQPSSRILSFEKTGLHVMNHN-SPNL------ 87

Query: 145 VSTPQLRNVNFPAQNR-----KGSTQNQNFETITNPQGKGSKKSHGQDHIIAERRRREKL 199
           + +P+   +  P   +     +G+ + Q   ++T  Q      S+ QDHI+AER+RREKL
Sbjct: 88  IFSPKDEEIGLPEHKKAELIIRGTKRAQ---SLTRSQ------SNAQDHILAERKRREKL 138

Query: 200 SQSXXXXXXXXPGLKKMDKASVLGDAIKYXXXXXXXXXXXXXQNKNRAMESVVVVNKPQI 259
           +Q         PGLKKMDKASVLGDAIK+             Q K + MESVV+V K  +
Sbjct: 139 TQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSL 198

Query: 260 XXXXX---XXXXXXXGTIIGSEEALPHVEARVSEKDVLLRLHCKKQKGLLLKILFEIQNL 316
                          G    S   LP +E RVS KDVL+++ C+KQKG ++KI+ EI+ L
Sbjct: 199 VLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKL 258

Query: 317 HLFVVNSSVLPFGDSILDITIVAQMGAEYNLTINELVKNL 356
            L + NS+VLPFG +  DI+I+AQ    +++ I ++VKNL
Sbjct: 259 GLSITNSNVLPFGPT-FDISIIAQ-NNNFDMKIEDVVKNL 296


>AT2G22760.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:9678012-9679165 FORWARD
           LENGTH=295
          Length = 295

 Score =  137 bits (346), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 12/197 (6%)

Query: 177 GKGSKK---SHG-------QDHIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAI 226
           G+G+K+   SHG       ++H++AER+RREKLS+         PGLKK DK ++L DAI
Sbjct: 99  GRGTKRKTCSHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAI 158

Query: 227 -KYXXXXXXXXXXXXXQNKNRAMESVVVVNKPQIXXXXXXXXXXXXGTIIGSEEALPHVE 285
            +              +   R MES+++V K ++               I  ++ALP +E
Sbjct: 159 SRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNLSCSPSVHIEFDQALPEIE 218

Query: 286 ARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQMGAEY 345
           A++S+ D+L+R+ C+K KG ++ IL  I+N  L + NS VLPFGDS LDIT++AQM  ++
Sbjct: 219 AKISQNDILIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTLDITVLAQMDKDF 278

Query: 346 NLTI-NELVKNLRVAAL 361
           +++I  +LV+NLR+A +
Sbjct: 279 SMSILKDLVRNLRLAMV 295


>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr2:9684858-9686321
           FORWARD LENGTH=320
          Length = 320

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 14/195 (7%)

Query: 179 GSKKSHG-QDHIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKYXXXXXXXXX 237
           G ++ H  ++H++AER+RR+KL++         PGLKK DKA+VL DAIK+         
Sbjct: 123 GRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVK 182

Query: 238 XXXXQN--KNRAMESVVVVNKPQIXXXXXXXXXXXXGTIIGS-----------EEALPHV 284
               +     +  +S+++V + Q+             +               ++ +P +
Sbjct: 183 KLEEERVVTKKMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMI 242

Query: 285 EARVSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQMGAE 344
           EARVS++D+L+R+HC+K KG ++KIL  ++   L VVNS  LPFG+S L ITI+ +M  +
Sbjct: 243 EARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTLVITILTKMDNK 302

Query: 345 YNLTINELVKNLRVA 359
           ++  + E+VKN+RVA
Sbjct: 303 FSRPVEEVVKNIRVA 317


>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:4384758-4386392
           FORWARD LENGTH=450
          Length = 450

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 188 HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKYXXXXXXXXXXXXXQNKNRA 247
           +++AERRRR+KL+          P + KMD+AS+LGDAI Y             + ++  
Sbjct: 268 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTP 327

Query: 248 MESVV---VVNKPQIXXXXXXXXXXXXGTIIGSEEALPHVEARVSE-KDVLLRLHCKKQK 303
             S     +   PQ              ++   +   P VE R+ E K V + + C ++ 
Sbjct: 328 PSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRRP 387

Query: 304 GLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQMGAEYNL 347
           GLLL  +  + NL L V  + +  F    LD+    Q   ++++
Sbjct: 388 GLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDV 431


>AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr4:9933702-9935471 REVERSE LENGTH=589
          Length = 589

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 175 PQGKGSKKSHGQD----HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKYXX 230
           P+ +G K ++G++    H+ AER+RREKL+Q         P + KMDKAS+LGDAI Y  
Sbjct: 400 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYIS 459

Query: 231 XXXXXXXXXXXQNKNRAMESVVVVNKPQIXXXXXXXXXXXXGTIIGSEEAL---PHVEAR 287
                       +K    + + V+NK                  +  E ++     V+ +
Sbjct: 460 ELKSKLQKAES-DKEELQKQIDVMNK----EAGNAKSSVKDRKCLNQESSVLIEMEVDVK 514

Query: 288 VSEKDVLLRLHCKKQKGLLLKILFEIQNLHLFVVNSSVLPFGDSILDITIVAQMGAEY 345
           +   D ++R+ C K+     K +  ++ L L V ++S+    D ++    V +MG ++
Sbjct: 515 IIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATV-KMGNQF 571


>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
           transcription factor | chr2:19091187-19092887 REVERSE
           LENGTH=566
          Length = 566

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQD----HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G K ++G++    H+ AER+RREKL+Q         P + KMDKAS+LGDAI Y
Sbjct: 379 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISY 436


>AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr5:18974231-18976009 FORWARD
           LENGTH=592
          Length = 592

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQD----HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G K ++G++    H+ AER+RREKL+Q         P + KMDKAS+LGDAI Y
Sbjct: 399 PRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISY 456


>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
           Basic helix-loop-helix (bHLH) DNA-binding family protein
           | chr1:11799042-11800913 REVERSE LENGTH=623
          Length = 623

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQD----HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G K ++G++    H+ AER+RREKL+Q         P + KMDKAS+LGDAI Y
Sbjct: 436 PKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAY 493


>AT1G01260.3 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQ----DHIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G + ++G+    +H+ AER+RREKL+Q         P + KMDKAS+LGDA+ Y
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSY 474


>AT1G01260.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQ----DHIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G + ++G+    +H+ AER+RREKL+Q         P + KMDKAS+LGDA+ Y
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSY 474


>AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:109595-111367 FORWARD
           LENGTH=590
          Length = 590

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQ----DHIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G + ++G+    +H+ AER+RREKL+Q         P + KMDKAS+LGDA+ Y
Sbjct: 417 PRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSY 474


>AT4G16430.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:9267599-9269002 FORWARD
           LENGTH=467
          Length = 467

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 175 PQGKGSKKSHGQD----HIIAERRRREKLSQSXXXXXXXXPGLKKMDKASVLGDAIKY 228
           P+ +G K ++G++    H+ AER+RREKL+Q         P + KMDKAS+L DAI Y
Sbjct: 304 PRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITY 361