Miyakogusa Predicted Gene

Lj2g3v1984100.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984100.2 Non Chatacterized Hit- tr|A9NZ33|A9NZ33_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,52.08,2e-18,ESSS,NADH:ubiquinone oxidoreductase, ESSS subunit;
seg,NULL,CUFF.38189.2
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42310.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   132   6e-32
AT3G57785.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   128   9e-31

>AT2G42310.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins
           in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4;
           Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:17625251-17625595 FORWARD
           LENGTH=114
          Length = 114

 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 66/77 (85%)

Query: 36  GHEEHPKGYLFNRTPLAPWESRSWEDWELPCYITSFLTIVILGVGLNAKPDLTMETWAHE 95
           GHEE PKGY  NRTP AP +SR WEDWELPCYITSFLTIVILGVGLNAKPDL++ETWAH+
Sbjct: 36  GHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQ 95

Query: 96  KALERLRMENNLTAGST 112
           KALERL ME   TAG +
Sbjct: 96  KALERLEMEKLATAGDS 112


>AT3G57785.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins
           in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4;
           Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE
           LENGTH=114
          Length = 114

 Score =  128 bits (322), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 65/77 (84%)

Query: 36  GHEEHPKGYLFNRTPLAPWESRSWEDWELPCYITSFLTIVILGVGLNAKPDLTMETWAHE 95
           GHEE PKGY  NRTP  P +SR WEDWELPCYITSFLTIVILGVGLNAKPDL++ETWAH+
Sbjct: 36  GHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQ 95

Query: 96  KALERLRMENNLTAGST 112
           KALERL ME   +AG +
Sbjct: 96  KALERLEMEKLASAGDS 112