Miyakogusa Predicted Gene

Lj2g3v1984090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984090.1 Non Chatacterized Hit- tr|I3SVC9|I3SVC9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.29,0,metallochaperone-like domain,TRASH;
Ribosomal_L24e,Ribosomal protein L24e-related; no
description,Ri,CUFF.38188.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L...   223   3e-59
AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:153...   222   3e-59
AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein ...    75   1e-14
AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein ...    75   1e-14

>AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e
           family protein | chr3:19660749-19661912 REVERSE
           LENGTH=163
          Length = 163

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 113/118 (95%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHN+LKPSKL WTAM+RKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKD AQEA +++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKER
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 118


>AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 |
           chr2:15350548-15351819 REVERSE LENGTH=164
          Length = 164

 Score =  222 bits (566), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 113/118 (95%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCKRYFHN+LKPSKL WTAM+RKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 118
           HKKD AQEA +++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKER
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 118


>AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein |
          chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
          ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  FR  H 
Sbjct: 1  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63 KDIAQEAA--RKKRRSTKKPYSRSIVGATLEVIQK 95
          KD+ ++     +K+R+  + Y R++   TL  I+K
Sbjct: 61 KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95


>AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein |
          chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHK 62
          ++ E C F  + IYPG GI+F+R+D+++F F  SKC + F  +  P K+ WT  FR  H 
Sbjct: 1  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63 KDIAQEAA--RKKRRSTKKPYSRSIVGATLEVIQK 95
          KD+ ++     +K+R+  + Y R++   TL  I+K
Sbjct: 61 KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKK 95