Miyakogusa Predicted Gene
- Lj2g3v1968220.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1968220.1 tr|G7K3T3|G7K3T3_MEDTR Cyclin-D5-1 OS=Medicago
truncatula GN=MTR_5g015670 PE=3 SV=1,69.35,0,CYCLIN-D,NULL;
CYCLINE,NULL; Cyclin_N,Cyclin, N-terminal; domain present in cyclins,
TFIIB and Retin,CUFF.38107.1
(328 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37630.2 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679497-176... 166 2e-41
AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679497-176... 161 5e-40
AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:2... 132 3e-31
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357... 125 3e-29
AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 | chr3:18565322-185... 122 4e-28
AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836313-268... 119 3e-27
AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 | chr2:9... 119 4e-27
AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555... 118 7e-27
AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280611-3282... 101 6e-22
AT5G65420.1 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-261... 100 1e-21
AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-261... 99 4e-21
AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433... 94 1e-19
AT5G65420.2 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26142110-261... 94 1e-19
AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 | chr5:41708... 72 4e-13
AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 | chr4... 66 3e-11
AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 | chr1:17303676-173... 62 6e-10
AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817... 61 1e-09
AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137... 60 2e-09
AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16775035-167... 60 2e-09
AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401551-114... 60 2e-09
AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein ... 59 7e-09
AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:362547... 58 7e-09
AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like cy... 58 1e-08
AT1G77390.1 | Symbols: TAM, CYCA1;2, DYP, CYCA1 | CYCLIN A1;2 | ... 57 2e-08
AT5G43080.1 | Symbols: CYCA3;1 | Cyclin A3;1 | chr5:17293227-172... 55 6e-08
AT1G47230.1 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306752-173... 55 8e-08
AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinase... 55 9e-08
AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306752-173... 53 3e-07
AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-286... 53 3e-07
AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587... 51 1e-06
AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 | chr4:16901744-169... 49 6e-06
>AT4G37630.2 | Symbols: CYCD5;1 | cyclin d5;1 |
chr4:17679497-17680788 FORWARD LENGTH=321
Length = 321
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 14/250 (5%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAA 142
S RL AIDWI T+ RFGF QTAY++++YFD FL KR I + + WA++LLSVACLSLAA
Sbjct: 70 SDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGKDETWAMRLLSVACLSLAA 129
Query: 143 KMEEQRVPPLSEYPI-QGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPG 201
KMEE+ VP LS+YP + F+ VI+ ELLILSTL+W+M L TPF Y +YF++K
Sbjct: 130 KMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFLAKISQD 189
Query: 202 SR---PETIITKATEHIVTMVRDVNLMDQRPXXXXXX-----XXXXXFDATLTKKAIDLR 253
+ + ++ ++++ ++ + ++++ + R D LT++ I +
Sbjct: 190 NHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSSDIRLTREEIANK 249
Query: 254 ISLISSWGNIESEHVFSCYNLIQEKTRDKVKTPXXXXXXXXXCVLENQSNTSTGIKRKLC 313
IS W + E+E+V+ CY E K TP V + +G KR+L
Sbjct: 250 FGSISWWTSNENENVYLCYQRTLEIEERKHMTP-----PPEIAVSREPPASGSGAKRRLS 304
Query: 314 YEDSENCSEP 323
++DS+ S P
Sbjct: 305 FDDSDQSSPP 314
>AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 |
chr4:17679497-17680788 FORWARD LENGTH=323
Length = 323
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 143/252 (56%), Gaps = 16/252 (6%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKR--SIDESKPWAIQLLSVACLSL 140
S RL AIDWI T+ RFGF QTAY++++YFD FL KR + + + WA++LLSVACLSL
Sbjct: 70 SDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSL 129
Query: 141 AAKMEEQRVPPLSEYPI-QGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFF 199
AAKMEE+ VP LS+YP + F+ VI+ ELLILSTL+W+M L TPF Y +YF++K
Sbjct: 130 AAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFLAKIS 189
Query: 200 PGSR---PETIITKATEHIVTMVRDVNLMDQRPXXXXXX-----XXXXXFDATLTKKAID 251
+ + ++ ++++ ++ + ++++ + R D LT++ I
Sbjct: 190 QDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSSDIRLTREEIA 249
Query: 252 LRISLISSWGNIESEHVFSCYNLIQEKTRDKVKTPXXXXXXXXXCVLENQSNTSTGIKRK 311
+ IS W + E+E+V+ CY E K TP V + +G KR+
Sbjct: 250 NKFGSISWWTSNENENVYLCYQRTLEIEERKHMTP-----PPEIAVSREPPASGSGAKRR 304
Query: 312 LCYEDSENCSEP 323
L ++DS+ S P
Sbjct: 305 LSFDDSDQSSPP 316
>AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 |
chr1:26440015-26441980 FORWARD LENGTH=339
Length = 339
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 62 IGSQIHFLSCDDDHSE---RCWMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLS 118
I + HF+ D S R SAR D++ WI QA + F TAYL+V Y DRFL
Sbjct: 56 IEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLY 115
Query: 119 KRSIDESKPWAIQLLSVACLSLAAKMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILS 176
R + E+ W +QLL+VACLSLAAKMEE VP L ++ + G Y FE K IK MELL+LS
Sbjct: 116 ARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLS 175
Query: 177 TLEWRMGLATPFAYLHYFVSKFFP-GSRPETIITKATEHIVTMVRDVNLMDQRP 229
L+WR+ TPF ++ +F K P G+ I+ ATE I++ +++ + ++ P
Sbjct: 176 VLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIKEASFLEYWP 229
>AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 |
chr4:16357903-16359304 FORWARD LENGTH=376
Length = 376
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 69 LSCDDDHSERCWMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPW 128
LSC DD ++ + R +A+ WI A +GF A L++TY D+F+ S+ KPW
Sbjct: 75 LSCLDD----VYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPW 130
Query: 129 AIQLLSVACLSLAAKMEEQRVPPLSEYPIQ--GYCFENKVIKNMELLILSTLEWRMGLAT 186
+QL+SVACLSLAAK+EE +VP L ++ ++ Y FE K I+ MELLILSTLEW+M L T
Sbjct: 131 MLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLIT 190
Query: 187 PFAYLHYFVSKF-FPGSRPETIITKATEHIVTMVRDVNLMDQRPXXXXXXXXXXXFDATL 245
P +++ + + + + + K +++++ D + P +
Sbjct: 191 PISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVD 250
Query: 246 TKKAIDLRISLISSWGNIESEHVFSCYNLIQEKTRDKV 283
+ + +L+ N+ E V +CY+LI + D++
Sbjct: 251 PFDPLSYQTNLLGVL-NLTKEKVKTCYDLILQLPVDRI 287
>AT3G50070.1 | Symbols: CYCD3;3 | CYCLIN D3;3 |
chr3:18565322-18566669 REVERSE LENGTH=361
Length = 361
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
Query: 85 RLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKM 144
R A+DWIF ++ +GF TA L+V YFDRF++ R KPW QL ++ACLSLAAK+
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKV 145
Query: 145 EEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKF-FPG 201
EE RVP L ++ ++ Y FE K I+ MELL+LSTL+WRM TP ++ + + ++ F
Sbjct: 146 EEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKS 205
Query: 202 SRPETIITKATEHIVTMVRDVNLMDQRPXXXXXXXXXXXF-DATLTKKAIDLRISLISSW 260
+++ +++++ D + P D + +A+ S + +
Sbjct: 206 HHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAV--YQSQLMTL 263
Query: 261 GNIESEHVFSCYNLIQEKTRDK 282
++SE V CY L+ + + K
Sbjct: 264 LKVDSEKVNKCYELVLDHSPSK 285
>AT5G67260.1 | Symbols: CYCD3;2 | CYCLIN D3;2 |
chr5:26836313-26837665 FORWARD LENGTH=367
Length = 367
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 8/208 (3%)
Query: 80 WMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLS 139
+++S R +A+DW+ ++ +GF TA L+V YFDRF++ + KPW QL++VA LS
Sbjct: 91 FLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLS 150
Query: 140 LAAKMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSK 197
LAAK+EE +VP L + ++ Y FE K I+ MELLILSTL+WRM TP ++ + + +
Sbjct: 151 LAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRR 210
Query: 198 FFPGSRPETIIT---KATEHIVTMVRDVNLMDQRPXXXXXXXXXXXFDATLTKKAIDLRI 254
F GS+ + K +++++ D M P F+ ++ +
Sbjct: 211 F--GSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQ- 267
Query: 255 SLISSWGNIESEHVFSCYNLIQEKTRDK 282
S I++ + E V CY L+ E K
Sbjct: 268 SQITTLLKVNQEKVNECYELLLEHNPSK 295
>AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 |
chr2:9554157-9555873 REVERSE LENGTH=361
Length = 361
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 5/203 (2%)
Query: 82 MSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLA 141
+S R A+DWI A + F LS+ Y DRFL+ + + K WA QLL+V+CLSLA
Sbjct: 94 LSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLA 153
Query: 142 AKMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFF 199
+KMEE VP + + ++ + FE K IK MELL+++TL WR+ TPF+++ YFV K
Sbjct: 154 SKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK-I 212
Query: 200 PGSRPETIITKATEHIVTMVRDVNLMDQRPXXXXXXXXXXXFDATLTKKAIDLRISLISS 259
G E +I +++ I+ + + +D RP + T + ID +L SS
Sbjct: 213 SGHVSENLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGET-ECIDEEKAL-SS 270
Query: 260 WGNIESEHVFSCYNLIQEKTRDK 282
++ E V C NL++ T ++
Sbjct: 271 LIYVKQERVKRCLNLMRSLTGEE 293
>AT2G22490.2 | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873
REVERSE LENGTH=362
Length = 362
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 82 MSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLA 141
+S R A+DWI A + F LS+ Y DRFL+ + + K WA QLL+V+CLSLA
Sbjct: 94 LSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLA 153
Query: 142 AKMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFF 199
+KMEE VP + + ++ + FE K IK MELL+++TL WR+ TPF+++ YFV K
Sbjct: 154 SKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK-I 212
Query: 200 PGSRPETIITKATEHIVTMVRDVNLMDQRP 229
G E +I +++ I+ + + +D RP
Sbjct: 213 SGHVSENLIYRSSRFILNTTKAIEFLDFRP 242
>AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280611-3282342
REVERSE LENGTH=298
Length = 298
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAA 142
+ R+ A+ WI+ F L++ Y DRFLS + K W +QLL+VACLSLAA
Sbjct: 67 NVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAA 126
Query: 143 KMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFF- 199
K+EE VP L + + + FE K ++ MELL+L+ L WR+ TP +Y+ YF+SK
Sbjct: 127 KIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKING 186
Query: 200 ----PGSRPETIITKATEHIVTMVRDVNLMDQR 228
P SR ++T++ + I + + ++ ++ R
Sbjct: 187 YDQEPHSR---LVTRSLQVIASTTKGIDFLEFR 216
>AT5G65420.1 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26141592-26143750 REVERSE LENGTH=308
Length = 308
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 84 ARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAK 143
R DA++WI+ F L++ Y DRFLS + K W +QLL+VACLSLAAK
Sbjct: 77 GRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAK 136
Query: 144 MEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPG 201
+EE VP L + + + FE K ++ MELL+L+ L+WR+ TP +Y+ YF+ K
Sbjct: 137 IEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKC 196
Query: 202 SR--PETIITKATEHIVTMVRDVNLMDQRP 229
+ T+I+++ + I + + ++ ++ RP
Sbjct: 197 DQEPSNTLISRSLQVIASTTKGIDFLEFRP 226
>AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26141592-26143750 REVERSE LENGTH=318
Length = 318
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 24/165 (14%)
Query: 84 ARLDAIDWIFNTQA------------RFG---FCVQTAYLSVTYFDRFLSKRSIDESKPW 128
R DA++WI+ + +FG FC L++ Y DRFLS + K W
Sbjct: 77 GRRDALNWIWKIRGLCRTDREACEVHQFGPLCFC-----LAMNYLDRFLSVHDLPSGKGW 131
Query: 129 AIQLLSVACLSLAAKMEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLAT 186
+QLL+VACLSLAAK+EE VP L + + + FE K ++ MELL+L+ L+WR+ T
Sbjct: 132 ILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAIT 191
Query: 187 PFAYLHYFVSKFFPGSR--PETIITKATEHIVTMVRDVNLMDQRP 229
P +Y+ YF+ K + T+I+++ + I + + ++ ++ RP
Sbjct: 192 PCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFLEFRP 236
>AT4G03270.1 | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691
REVERSE LENGTH=302
Length = 302
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 94/156 (60%), Gaps = 7/156 (4%)
Query: 79 CWMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACL 138
+++S R AI I +F T YL+V Y DRFLS + +SKPW ++L+S++C+
Sbjct: 52 AFLLSNRNQAISSITQYSRKFDDPSLT-YLAVNYLDRFLSSEDMPQSKPWILKLISLSCV 110
Query: 139 SLAAKMEEQRVPPLSEYPIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKF 198
SL+AKM + + +S+ P++G F+ ++I+ ME +IL L+WRM TPF++L +F+S F
Sbjct: 111 SLSAKMRKPDM-SVSDLPVEGEFFDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLF 169
Query: 199 F-----PGSRPETIITKATEHIVTMVRDVNLMDQRP 229
P ++ ++ ++ ++ D++ ++ +P
Sbjct: 170 ELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKP 205
>AT5G65420.2 | Symbols: CYCD4;1 | CYCLIN D4;1 |
chr5:26142110-26143750 REVERSE LENGTH=242
Length = 242
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 84 ARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAK 143
R DA++WI+ F L++ Y DRFLS + K W +QLL+VACLSLAAK
Sbjct: 77 GRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAK 136
Query: 144 MEEQRVPPLSEYPIQG--YCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPG 201
+EE VP L + + + FE K ++ MELL+L+ L+WR+ TP +Y+ YF+ K
Sbjct: 137 IEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKC 196
Query: 202 SR--PETIITKATEHIVTMVR 220
+ T+I+++ + I + +
Sbjct: 197 DQEPSNTLISRSLQVIASTTK 217
>AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 |
chr5:417087-418553 FORWARD LENGTH=341
Length = 341
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 85 RLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKM 144
R A W+ T++R +T + + FDRF+ DE W ++L++V LS+A+K
Sbjct: 78 RFHAFQWLIQTRSRLNLSYETVFSAANCFDRFVYMTCCDEWTNWMVELVAVTSLSIASKF 137
Query: 145 EEQRVP--PLSEYPIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKF-FPG 201
E P E + F + MEL+IL LEWR+ T + + VSK G
Sbjct: 138 NEVTTPLLEELEMEGLTHMFHVNTVAQMELIILKALEWRVNAVTSYTFSQTLVSKIGMVG 197
Query: 202 SRPETIITKATEHIVTMVRDVNLMDQRP 229
I+ + T H++ ++ D+ ++ P
Sbjct: 198 D--HMIMNRITNHLLDVICDLKMLQYPP 223
>AT4G37490.1 | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 |
chr4:17622129-17624208 REVERSE LENGTH=428
Length = 428
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 85 RLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKM 144
RL ++W+ + RF +T YL+V DRFLS + + + +QL+ ++ L ++AK
Sbjct: 197 RLILVEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKE---LQLVGLSALLMSAKY 253
Query: 145 EEQRVPPLSE-YPIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPGSR 203
EE P + + I + + +K I ME ILSTLEW + + T + +L F+ +
Sbjct: 254 EEIWPPQVEDLVDIADHAYSHKQILVMEKTILSTLEWYLTVPTHYVFLARFIKASIADEK 313
Query: 204 PETIITKATE----HIVTMV 219
E ++ E H TM+
Sbjct: 314 MENMVHYLAELGVMHYDTMI 333
>AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 |
chr1:17303676-17305197 FORWARD LENGTH=327
Length = 327
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAA 142
S R +DW+ F +T YL+V+Y DRFLS + ++E W +QL+ V+ + +A+
Sbjct: 90 SKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSLKMVNEH--W-LQLVGVSAMFIAS 146
Query: 143 KMEEQRVPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
K EE+R P + ++ I + + + ME IL LE+ +G T +L F+
Sbjct: 147 KYEEKRRPKVEDFCYITANTYTKQDVLKMEEDILLALEFELGRPTTNTFLRRFI 200
>AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817566
FORWARD LENGTH=437
Length = 437
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ + T YL+V DRF+S I++ K +QLL + C+ +A+K EE
Sbjct: 211 IDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQK---LQLLGITCMLIASKYEEIS 267
Query: 149 VPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
P L E+ I + + +ME+ +L++L +R+ + T +L F+
Sbjct: 268 APRLEEFCFITDNTYTRLEVLSMEIKVLNSLHFRLSVPTTKTFLRRFI 315
>AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273
REVERSE LENGTH=429
Length = 429
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ +F +T YL++ DRFL+ I K +QL+ V L LA K EE
Sbjct: 214 IDWLIEVHYKFELMEETLYLTINVIDRFLAVHQIVRKK---LQLVGVTALLLACKYEEVS 270
Query: 149 VPPLSEYP-IQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
VP + + I + + + +ME L+ +TL++ L TP+ ++ F+
Sbjct: 271 VPVVDDLILISDKAYSRREVLDMEKLMANTLQFNFSLPTPYVFMKRFL 318
>AT1G44110.1 | Symbols: CYCA1;1 | Cyclin A1;1 |
chr1:16775035-16777182 REVERSE LENGTH=460
Length = 460
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 72 DDDHSERCWM---MSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPW 128
D D+ ER S R +DW+ + +T YL+V Y DR+LS I K
Sbjct: 212 DVDYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVISRQK-- 269
Query: 129 AIQLLSVACLSLAAKMEEQRVPPLSEYPIQGYCFENKVIK----NMELLILSTLEWRMGL 184
+QLL VAC+ +AAK EE P + E+ Y +N +K +ME +L+ L++ M
Sbjct: 270 -LQLLGVACMMIAAKYEEICAPQVEEF---CYITDNTYLKDEVLDMESDVLNYLKFEMTA 325
Query: 185 ATPFAYLHYFV 195
T +L FV
Sbjct: 326 PTTKCFLRRFV 336
>AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 |
chr2:11401551-11403205 FORWARD LENGTH=387
Length = 387
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ + +F +T YL++ DRFLS + + +QLL + + +A K EE
Sbjct: 166 IDWLVDVHRKFELMPETLYLTINLVDRFLSLTMVHRRE---LQLLGLGAMLIACKYEEIW 222
Query: 149 VPPLSEYP-IQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFP 200
P ++++ I + K + ME IL +EW + + TP+ +L +V P
Sbjct: 223 APEVNDFVCISDNAYNRKQVLAMEKSILGQVEWYITVPTPYVFLARYVKAAVP 275
>AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein |
chr5:1859542-1861570 REVERSE LENGTH=445
Length = 445
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ +F ++T YL+V DRFLS +++ + + +QL+ ++ L +A+K EE
Sbjct: 218 IDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRE---LQLVGISALLIASKYEEIW 274
Query: 149 VPPLSEYP-IQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
P +++ + + ++ I ME IL LEW + + T + +L F+
Sbjct: 275 PPQVNDLVYVTDNAYSSRQILVMEKAILGNLEWYLTVPTQYVFLVRFI 322
>AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 |
chr3:3625475-3627139 REVERSE LENGTH=414
Length = 414
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ +F +T YL+V DRFLS +++ + +QL+ V+ L +A+K EE
Sbjct: 195 IDWLVEVHVKFDLSPETLYLTVNIIDRFLSLKTVPRRE---LQLVGVSALLIASKYEEIW 251
Query: 149 VPPLSEYP-IQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPGSRPETI 207
P +++ + + ++ I ME IL LEW + + T + +L F+ + E +
Sbjct: 252 PPQVNDLVYVTDNSYNSRQILVMEKTILGNLEWYLTVPTQYVFLVRFIKASGSDQKLENL 311
Query: 208 I 208
+
Sbjct: 312 V 312
>AT5G11300.1 | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like
cyclin 3B from Arabidopsis | chr5:3601811-3604466
REVERSE LENGTH=436
Length = 436
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ + T YL+V DRFLS I+ + +QLL V+C+ +A+K EE
Sbjct: 210 IDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQR---LQLLGVSCMLIASKYEELS 266
Query: 149 VPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
P + E+ I + + +ME+ IL+ + +R+ + T +L F+
Sbjct: 267 APGVEEFCFITANTYTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFI 314
>AT1G77390.1 | Symbols: TAM, CYCA1;2, DYP, CYCA1 | CYCLIN A1;2 |
chr1:29081904-29084137 REVERSE LENGTH=442
Length = 442
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAA 142
S R IDW+ + +T YL+V Y DR+L+ +I++ +QLL V C+ +AA
Sbjct: 210 SMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQN---LQLLGVTCMMIAA 266
Query: 143 KMEEQRVPPLSEYPIQGYCFENKVIKN----MELLILSTLEWRMGLATPFAYLHYFV 195
K EE VP + ++ Y +N ++N ME +L+ L++ + T +L F+
Sbjct: 267 KYEEVCVPQVEDF---CYITDNTYLRNELLEMESSVLNYLKFELTTPTAKCFLRRFL 320
>AT5G43080.1 | Symbols: CYCA3;1 | Cyclin A3;1 |
chr5:17293227-17294789 FORWARD LENGTH=355
Length = 355
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
+DW+ + T YL+V+Y DRFLS +++++ + +QLL V + +A+K EE
Sbjct: 125 VDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQR---LQLLGVTSMLIASKYEEIT 181
Query: 149 VPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYF 194
P + ++ I + + I ME IL L++ +G T +L F
Sbjct: 182 PPNVDDFCYITDNTYTKQEIVKMEADILLALQFELGNPTSNTFLRRF 228
>AT1G47230.1 | Symbols: CYCA3;4 | CYCLIN A3;4 |
chr1:17306752-17308587 FORWARD LENGTH=369
Length = 369
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
+DW+ + T YL+++Y DRFLS + I+ K +QL+ V+ + +A+K EE
Sbjct: 135 VDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQK---LQLVGVSAMLIASKYEEIG 191
Query: 149 VPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYF 194
P + ++ I F + + +ME IL L++ +G T +L F
Sbjct: 192 PPKVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTFLRRF 238
>AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinase
3;2 | chr1:17301036-17302584 FORWARD LENGTH=372
Length = 372
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 83 SARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAA 142
S R +DW+ + +T YL+V++ DRFLS +++++ K +QL+ V+ + +A+
Sbjct: 136 SMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQK---LQLVGVSAMLIAS 192
Query: 143 KMEEQRVPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYF 194
K EE P + ++ I F + + ME IL L++ +G T ++ F
Sbjct: 193 KYEEISPPKVDDFCYITDNTFSKQDVVKMEADILLALQFELGRPTINTFMRRF 245
>AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 |
chr1:17306752-17308587 FORWARD LENGTH=370
Length = 370
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
+DW+ + T YL+++Y DRFLS + I+ K +QL+ V+ + +A++ E+
Sbjct: 135 VDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQK---LQLVGVSAMLIASRKYEEI 191
Query: 149 VPPLSEYPIQGYC------FENKVIKNMELLILSTLEWRMGLATPFAYLHYF 194
PP ++ +C F + + +ME IL L++ +G T +L F
Sbjct: 192 GPP----KVEDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTFLRRF 239
>AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 |
chr1:28628046-28630199 REVERSE LENGTH=431
Length = 431
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 90 DWIFNTQARFGFCVQTAYLSVTYFDRFLS-KRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
DW+ +F +T YL++ DRFL+ + I K +QL+ V + LA K EE
Sbjct: 215 DWLIEVHYKFELMEETLYLTINLIDRFLAVHQHIARKK---LQLVGVTAMLLACKYEEVS 271
Query: 149 VPPLSEYP-IQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
VP + + I + I +ME L+ +TL++ L TP+ ++ F+
Sbjct: 272 VPVVDDLILISDKAYTRTEILDMEKLMANTLQFNFCLPTPYVFMRRFL 319
>AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587391
REVERSE LENGTH=648
Length = 648
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 67 HFLSCDDDHSERCWMMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESK 126
H+LS H+E + L I+W+ +F +T YL++ DR+LS+ I +++
Sbjct: 415 HYLSA---HAEVSPVTRGIL--INWLIEVHFKFDLMHETLYLTMDLLDRYLSQVPIHKNE 469
Query: 127 PWAIQLLSVACLSLAAKMEEQRVPPLSEY-PIQGYCFENKVIKNMELLILSTLEWRMGLA 185
+QL+ + L LA+K E+ P + + I + + I ME +L L++R+
Sbjct: 470 ---MQLIGLTALLLASKYEDYWHPRIKDLISISAESYTREQILGMERSMLKQLKFRLNAP 526
Query: 186 TPFAYLHYFV 195
TP+ ++ F+
Sbjct: 527 TPYVFMLRFL 536
>AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 |
chr4:16901744-16903766 FORWARD LENGTH=429
Length = 429
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 89 IDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQR 148
IDW+ +F +T +L+V DRFLSK+++ K +QL+ + L LA K EE
Sbjct: 209 IDWLIEVHDKFELMNETLFLTVNLIDRFLSKQAVARKK---LQLVGLVALLLACKYEEVS 265
Query: 149 VPPLSE-YPIQGYCFENKVIKNMELLILSTLEWRMGLATPFAYLHYFV 195
VP + + I + + ME ++LSTL++ M L T + +L F+
Sbjct: 266 VPIVEDLVVISDKAYTRTDVLEMEKIMLSTLQFNMSLPTQYPFLKRFL 313