Miyakogusa Predicted Gene

Lj2g3v1968210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1968210.1 tr|C1FEK9|C1FEK9_MICSR H+-or Na+-translocating
f-type, v-type and A-type ATPase superfamily
OS=Micro,42.99,1e-18,SUBFAMILY NOT NAMED,NULL; VACUOLAR ATP SYNTHASE
SUBUNIT AC39,ATPase, V0 complex, subunit D; vATP-syn,gene.g42467.t1.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28710.1 | Symbols:  | ATPase, V0/A0 complex, subunit C/D | c...   204   3e-53
AT3G28715.2 | Symbols:  | ATPase, V0/A0 complex, subunit C/D | c...   204   4e-53
AT3G28715.1 | Symbols:  | ATPase, V0/A0 complex, subunit C/D | c...   204   4e-53

>AT3G28710.1 | Symbols:  | ATPase, V0/A0 complex, subunit C/D |
           chr3:10773144-10775594 REVERSE LENGTH=351
          Length = 351

 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 102/112 (91%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQVYAVMEKYPPYQSIFAKLSYGESQMPDKAFYEEEAK 181
            + NFGLLYPYGHEELA+CED+DQV  VMEKYPPYQ+IF+K+SYGESQM DKAFYEEE +
Sbjct: 240 LYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299

Query: 182 RLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSVVFIF 233
           RLCL FEQQF YAVFF YMRL +QEIRNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 300 RLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351


>AT3G28715.2 | Symbols:  | ATPase, V0/A0 complex, subunit C/D |
           chr3:10778025-10780350 FORWARD LENGTH=343
          Length = 343

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 102/112 (91%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQVYAVMEKYPPYQSIFAKLSYGESQMPDKAFYEEEAK 181
            + NFGLLYPYGHEELA+CED+DQV  VMEKYPPYQ+IF+K+SYGESQM DKAFYEEE +
Sbjct: 232 LYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 291

Query: 182 RLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSVVFIF 233
           RLCL FEQQF YAVFF YMRL +QEIRNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 292 RLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 343


>AT3G28715.1 | Symbols:  | ATPase, V0/A0 complex, subunit C/D |
           chr3:10778025-10780350 FORWARD LENGTH=351
          Length = 351

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 102/112 (91%)

Query: 122 FHPNFGLLYPYGHEELAVCEDVDQVYAVMEKYPPYQSIFAKLSYGESQMPDKAFYEEEAK 181
            + NFGLLYPYGHEELA+CED+DQV  VMEKYPPYQ+IF+K+SYGESQM DKAFYEEE +
Sbjct: 240 LYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299

Query: 182 RLCLVFEQQFQYAVFFEYMRLGKQEIRNLMWISECVAQNQKSRVHDSVVFIF 233
           RLCL FEQQF YAVFF YMRL +QEIRNLMWISECVAQNQKSR+HDSVV++F
Sbjct: 300 RLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351