Miyakogusa Predicted Gene

Lj2g3v1965070.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1965070.2 tr|G1K2X6|G1K2X6_DANRE Cytosolic Fe-S cluster
assembly factor narfl OS=Danio rerio GN=narfl PE=4
SV=,44.07,1e-18,Fe-only hydrogenase,Iron hydrogenase; no
description,NULL; NARF-RELATED,NULL; NITRATE, FROMATE,
IRON,CUFF.38092.2
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16440.1 | Symbols:  | ferredoxin hydrogenases | chr4:9269263...   167   2e-42

>AT4G16440.1 | Symbols:  | ferredoxin hydrogenases |
           chr4:9269263-9271510 REVERSE LENGTH=474
          Length = 474

 Score =  167 bits (423), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/124 (65%), Positives = 99/124 (79%), Gaps = 4/124 (3%)

Query: 1   MGLRPEEVYHVTVMPCYDKKLEAAREDFVFQLESHVEAHEGEVNMISEVDLVLTTGEILE 60
           +GLR  EVYHVTVMPCYDKKLEAAR+DFVF   +      G++ + +EVD VLTTGEI++
Sbjct: 218 LGLRLHEVYHVTVMPCYDKKLEAARDDFVFDDGTQ---DNGDLKL-TEVDSVLTTGEIMD 273

Query: 61  LIQSKEVDFKSLEEPPLDKLIININEEGHLYGVPGSSGGYAEAIFRYAAKALFGRQIDGP 120
           LI+ K VDFK LEE PLD+++ N+ EEG LYGV GSSGGYAE IFR+AAKALFG+ I+GP
Sbjct: 274 LIKLKGVDFKDLEESPLDRVLTNVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIEGP 333

Query: 121 LNFR 124
           L F+
Sbjct: 334 LEFK 337