Miyakogusa Predicted Gene

Lj2g3v1963040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1963040.1 Non Chatacterized Hit- tr|I1J9C9|I1J9C9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,83.77,0,no
description,Ribonuclease III domain; RNase III
domain-like,Ribonuclease III domain; seg,NULL; Rib,CUFF.38088.1
         (595 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37510.1 | Symbols:  | Ribonuclease III family protein | chr4...   840   0.0  
AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST Arabid...   119   7e-27
AT2G48121.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    89   7e-18

>AT4G37510.1 | Symbols:  | Ribonuclease III family protein |
           chr4:17626259-17628854 REVERSE LENGTH=537
          Length = 537

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/496 (81%), Positives = 441/496 (88%), Gaps = 2/496 (0%)

Query: 101 QSRNPSFRILAVAVDPTKELSKNSPQRLLKELAERKKITSPKKG-PPRRFILRPPLDDKK 159
           +SR  + RI A     T+ L ++SPQRLLKELA+RK  T PKK  PP+RFILRPPLDDKK
Sbjct: 42  KSRFQNLRICASVTAETQGLPRDSPQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKK 101

Query: 160 LAERFLNSPQLSLKSFPLLSSCLPSTRLNNADKLWIDEYLLEAKQALGYSLEPSETLGDD 219
           LAERFLNSPQLSLKSFPLLSSCLPS++LNNADK WIDEYLLE KQALGYSLEPSE+LGDD
Sbjct: 102 LAERFLNSPQLSLKSFPLLSSCLPSSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDD 161

Query: 220 NPAKQFDTLLYLAFQHPSCERTKARHVRSGHSRLLFLGQHVLELALCEFFLQRYPRESPG 279
           NPAK FDTLLYLAFQHPSC+R +ARHV++GHSRL FLGQ+VLELAL EFFLQRYPRESPG
Sbjct: 162 NPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPG 221

Query: 280 PMRERVYGLIGKRSLPKWIKAASLQNLVFPYDDIDKMLRKDKEGPIKSVFWALFGAIYLC 339
           PMRERV+ LIGKR LPKWIKAASLQNL+FPYDD+DK++RK++E P+KSVFWALFGAIYLC
Sbjct: 222 PMRERVFALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLC 281

Query: 340 FGMPEVYRVLFEVFGMDPDAEDCQPRLRRQLEDVDYVSTELE-TKLSWQDIVTYKPPPDA 398
           FGMPEVYRVLFEVFGMDPDA++CQPR RRQLEDVDYVS E E  KL WQDI TYKPP DA
Sbjct: 282 FGMPEVYRVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDA 341

Query: 399 LFAHPRLFRACVPPGMHRFRGNIWDFDCKPQVMKALGYPLEMTDRIQEITEARNIELGLG 458
           LFAHPRLFRACVPPGMHRFRGNIWDFD KP+VM+ LGYPL M DRI+EITEARNIELGLG
Sbjct: 342 LFAHPRLFRACVPPGMHRFRGNIWDFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLG 401

Query: 459 LQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGMWLQERHRRVLM 518
           LQLCF+HPSK+KFEHPRFCFERLEYVGQKIQD+ MAERLLMKHLDAPG WLQE+HRR+LM
Sbjct: 402 LQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLM 461

Query: 519 NKHCGRYLRAKHLHGFMIYHETVQDSYERNRRRRNPASTAVHQALHGLSYLVYGKRDVRR 578
           NK CGRYLR K LH F+IY E V D YE NRR RNPA+TAV QA+HGL+Y +YGK DVRR
Sbjct: 462 NKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRR 521

Query: 579 LMFEVFDVEQTQPKEV 594
           LMFEVFD EQ QPK V
Sbjct: 522 LMFEVFDFEQIQPKAV 537


>AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST
           Arabidopsis thaliana protein match is: Ribonuclease III
           family protein (TAIR:AT4G37510.1). |
           chr2:19682096-19682329 FORWARD LENGTH=77
          Length = 77

 Score =  119 bits (297), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/77 (72%), Positives = 61/77 (79%)

Query: 518 MNKHCGRYLRAKHLHGFMIYHETVQDSYERNRRRRNPASTAVHQALHGLSYLVYGKRDVR 577
           MNK CGRYLR K LH F+IY E V D YE NRR RNPA+TAV QA+HGL+Y +YGK DVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 578 RLMFEVFDVEQTQPKEV 594
           RLMFEVFD EQ QPK V
Sbjct: 61  RLMFEVFDFEQIQPKAV 77


>AT2G48121.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: Ribonuclease III family protein (TAIR:AT4G37510.1).
           | chr2:19681680-19682329 FORWARD LENGTH=75
          Length = 75

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 45/56 (80%)

Query: 539 ETVQDSYERNRRRRNPASTAVHQALHGLSYLVYGKRDVRRLMFEVFDVEQTQPKEV 594
           E V D YE NRR RNPA+TAV QA+HGL+Y +YGK DVRRLMFEVFD EQ QPK V
Sbjct: 20  EEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75