Miyakogusa Predicted Gene

Lj2g3v1953000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1953000.1 Non Chatacterized Hit- tr|G7IU15|G7IU15_MEDTR
Uncharacterized protein OS=Medicago truncatula
GN=MTR_,89.74,0,Q9FN15_ARATH_Q9FN15;,Uncharacterised protein family
Ycf36; DUF1230,Uncharacterised protein family Yc,CUFF.38084.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67370.1 | Symbols:  | Protein of unknown function (DUF1230) ...   374   e-104
AT5G11840.1 | Symbols:  | Protein of unknown function (DUF1230) ...   145   3e-35

>AT5G67370.1 | Symbols:  | Protein of unknown function (DUF1230) |
           chr5:26877667-26879465 REVERSE LENGTH=327
          Length = 327

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 207/275 (75%), Gaps = 2/275 (0%)

Query: 40  VSIKVKAIKDEMXXX--XXXXXXXXWDPGMEIEVPFEQRPVNEYSSLKDGMLYSWGELGP 97
           +S+ VKA++D+              WDP  EIEVP +QRPVNEYSSLK+GMLYSWGELGP
Sbjct: 53  LSVSVKAVEDKGNNGGGSMSFSGQSWDPSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGP 112

Query: 98  GSFFLRLGGLWLAVFTVLGAPISAASFNPSREPLRFILAAGTGTLFIVSLIVLRIYLGWS 157
             FF+RLGGLWL  FTVLG P++AASFNPSREPLRFILAAGTGTLF+VSLIVLRIYLGWS
Sbjct: 113 SEFFIRLGGLWLVTFTVLGVPVAAASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWS 172

Query: 158 YVGDRLLSAVIPYEESGWYDGQMWVKPPEILARDRLLGSYKVKPVVKLLKQXXXXXXXXX 217
           YVGDRLLSAVIPYEESGWYDGQMWVKPPE+LARDRLLGSYKVKPV+K+LKQ         
Sbjct: 173 YVGDRLLSAVIPYEESGWYDGQMWVKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGALL 232

Query: 218 XXXXXXFIFATPVENFFHSTFSTEENKSIAQAPKVNNKFNLRKEELLKLPXXXXXXXXXX 277
                 F+FATPVE+FF +T  + EN+      + +NKFN+RKE+LL+LP          
Sbjct: 233 VSAFVLFVFATPVEDFFKTTLGSTENQPEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLA 292

Query: 278 XXXXXXXXGRPVYCRDRLHRALAGGQYCKWEDLLK 312
                   GRPVYCRDR +RALAGGQYCKWEDL+K
Sbjct: 293 AAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK 327


>AT5G11840.1 | Symbols:  | Protein of unknown function (DUF1230) |
           chr5:3813610-3814805 REVERSE LENGTH=265
          Length = 265

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 101/147 (68%), Gaps = 5/147 (3%)

Query: 65  PGMEIEVPFEQRPVNEYSSLKDGMLYSW--GELGPGSFFLRLGGLWLAVFTVLGAPIS-A 121
           P  +  VP EQ+P+NEY SL     +SW  G+L   S  L L G   A F  +G P+S  
Sbjct: 57  PETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFF--VGLPVSWF 114

Query: 122 ASFNPSREPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMW 181
            S  P  EP++ ILAA +  +F+V+L V+R+YLGW+YVG+RLLSA + YEE+GWYDGQ+W
Sbjct: 115 GSIGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVW 174

Query: 182 VKPPEILARDRLLGSYKVKPVVKLLKQ 208
           VK PE+LARDRLLGS+ VKPV+  LK 
Sbjct: 175 VKTPEVLARDRLLGSFSVKPVLARLKN 201