Miyakogusa Predicted Gene

Lj2g3v1925720.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1925720.2 tr|F2EFC3|F2EFC3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,35.19,0.000000000000002,seg,NULL; coiled-coil,NULL;
LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED,NULL,CUFF.38069.2
         (521 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49990.1 | Symbols:  | unknown protein; Has 1524 Blast hits t...   320   1e-87

>AT3G49990.1 | Symbols:  | unknown protein; Has 1524 Blast hits to
           1298 proteins in 225 species: Archae - 9; Bacteria - 84;
           Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17;
           Other Eukaryotes - 658 (source: NCBI BLink). |
           chr3:18532492-18534000 REVERSE LENGTH=502
          Length = 502

 Score =  320 bits (820), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 229/538 (42%), Positives = 303/538 (56%), Gaps = 61/538 (11%)

Query: 1   MGKKKFIDKRNAATFQLIARDSSDPAFSTS---DRVFVRVDNNPLS-------------N 44
           MGKKKFIDK+ AATF+L  RD+SDP +S +   D++F+RVD NP++             +
Sbjct: 1   MGKKKFIDKKKAATFELCPRDTSDPRYSDAPGGDKIFLRVDQNPVNINGFIEEDEEEEGD 60

Query: 45  DSIFDDAPEDCD-DNDSLNGDEGALPDDVRREILELGFPDDGYNYLDHMREIKNTGGGSA 103
            S FDDAPE+ D    S      +LP  VR+EILELG+PDDGYNYL+H+REIKNTGGGS 
Sbjct: 61  SSRFDDAPEEMDYGYSSFGDSSSSLPAHVRKEILELGYPDDGYNYLEHLREIKNTGGGSN 120

Query: 104 FFNNPKFKLQHVPRDIKAYDASRLQIS-EADKEPEENTI-YTVAAKTTSIRVQKAIDPEV 161
           F+ NPK+++  +PRD+KAYDASR++IS   ++E  +N + Y+VA+KT +++VQKAIDPEV
Sbjct: 121 FYVNPKYEVAQLPRDVKAYDASRVKISGMVNEEGNDNKLMYSVASKTVNVKVQKAIDPEV 180

Query: 162 AALLDDTDLSRFGSDVEDLEEDFVVQANLXXXXXXXXXXPICNGTKFAEESMISRSENNA 221
           AALL+++D S FGSDVEDLEEDFVVQANL               T+  E S +S  E   
Sbjct: 181 AALLENSDGSEFGSDVEDLEEDFVVQANL---------------TQKGESSGVSNGE--- 222

Query: 222 QVLQVSAHSRVIDDYGSLDGVTNNEAGEDCAGDKPRARRLLDEQFDLLERQXXXXXXXXX 281
             L+ S    V +           E+ E  A + PR  R +DE FD LE           
Sbjct: 223 --LEFSVRREVRE----------RESDEPVA-ENPRVPRQIDELFDQLELNEYGSDSDGD 269

Query: 282 XXXXXXXXXXNYQAEDEFLAEKLKASLNNHTMD-SLEPDDDTYKVPADLLKKNEAPNSEE 340
                       + E++F+A++++  ++    D  LE   + Y  PAD+LK +++   +E
Sbjct: 270 GYIAEDGEE---EEEEDFMAQEVQNLIHGKAKDYELE---EKYMNPADILKNSDSVRDKE 323

Query: 341 QEDFAADLIRRTXXXXXXXXXXXXXXXXILVQESSDESEVWDCETIVSTYSNLDNHPGKI 400
           + D AA +IRRT                 L +ESSDESE  DCETIVSTYSNLDN PGKI
Sbjct: 324 EVDTAAHVIRRTVEYGENFDNGNEDEFVELTEESSDESEKHDCETIVSTYSNLDNLPGKI 383

Query: 401 EAPGVARKKKLAETMXXXXXXXXXXXXXRGKEKLPVDFLPGAKKPATE-KVKGPSNASTE 459
            A   AR+KKL+ET+             +G+E++PV+FLPG +   T+ K + P     E
Sbjct: 384 LAAESARQKKLSETLANALSSNGRIINLQGRERIPVEFLPGRRAEQTDVKAEIP---KAE 440

Query: 460 QYKRKQHGLESXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKGEAHRAQRAAAVSGPSS 517
             KRK HG ES                           LY GE  RAQRA A SGPSS
Sbjct: 441 PIKRKTHGQESKEEKKERKNAVKAEKREARIIKKQTKMLYCGETQRAQRAVATSGPSS 498