Miyakogusa Predicted Gene

Lj2g3v1904470.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1904470.2 Non Chatacterized Hit- tr|B8ACT4|B8ACT4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,85.71,0.078,Rer1,Retrieval of early ER protein Rer1; PROTEIN
RER1,Retrieval of early ER protein Rer1,CUFF.38046.2
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:1826...   262   9e-71
AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum ...   258   2e-69
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...   249   8e-67
AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein | chr2:991...   244   2e-65
AT2G18240.1 | Symbols:  | Rer1 family protein | chr2:7935466-793...   209   8e-55
AT2G18240.2 | Symbols:  | Rer1 family protein | chr2:7935466-793...   209   9e-55

>AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein |
           chr4:18264280-18265531 FORWARD LENGTH=191
          Length = 191

 Score =  262 bits (670), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 140/163 (85%), Gaps = 2/163 (1%)

Query: 24  YQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGIYILNLLIGFLSPQVD 83
           YQH LDKTTPH   RW+G LVVA IY LRVY ++GFYI++Y LGIY+LNLLIGFLSP VD
Sbjct: 26  YQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVD 85

Query: 84  PEV--YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPI 141
           PE     DGP+LPT GSDEF+PF+RR+PEFKFWYS+TKAFCIAF+MTFFS FDVPVFWPI
Sbjct: 86  PEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPI 145

Query: 142 LLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAE 184
           LL YW+VLF LTMRRQI+HMIKYKY+PFSFGKQ+Y G+ +S  
Sbjct: 146 LLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGS 188


>AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
           retrieval protein 1B | chr2:9243550-9244579 FORWARD
           LENGTH=195
          Length = 195

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/163 (74%), Positives = 140/163 (85%), Gaps = 1/163 (0%)

Query: 24  YQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGIYILNLLIGFLSPQVD 83
           YQ+ LDKTTPH   RW+G LV   IY LRVY + GFYI+SY LGIY+LNLLIGFLSP VD
Sbjct: 26  YQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVD 85

Query: 84  PEV-YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPIL 142
           PE+   DG TLPT GSDEF+PF+RR+PEFKFWYS+TKAFCIAF+MTFFS FDVPVFWPIL
Sbjct: 86  PELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPIL 145

Query: 143 LFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAES 185
           L YWVVLF LTMRRQI+HMIK+KY+PFS GKQ+Y+G+++SA S
Sbjct: 146 LCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANS 188


>AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=212
          Length = 212

 Score =  249 bits (636), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 140/180 (77%), Gaps = 1/180 (0%)

Query: 9   PETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGI 68
           P  A++R     SQ+ QH+LDKT PHVL RW+ CL V  IY++RVY VEGFYI++YA+GI
Sbjct: 33  PADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGI 92

Query: 69  YILNLLIGFLSPQVDPEV-YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFCIAFVM 127
           Y+LNL+I FLSPQ DPE     G +LPT  SDE+RPFVRR+PEFKFW SI +AF I F+M
Sbjct: 93  YLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMM 152

Query: 128 TFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAESKS 187
           TFF  FDVPVFWPILLFYWV+LF LTMR+QI HMIKY+YVPFSFGK++Y  K A  ES  
Sbjct: 153 TFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTESSE 212


>AT2G23310.2 | Symbols: ATRER1C1 | Rer1 family protein |
           chr2:9917643-9918913 FORWARD LENGTH=211
          Length = 211

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 139/180 (77%), Gaps = 2/180 (1%)

Query: 9   PETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGI 68
           P  A++R     SQ+ QH+LDKT PHVL RW+ CL V  IY++RVY VEGFYI++YA+GI
Sbjct: 33  PADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGI 92

Query: 69  YILNLLIGFLSPQVDPEV-YDDGPTLPTSGSDEFRPFVRRIPEFKFWYSITKAFCIAFVM 127
           Y+LNL+I FLSPQ DPE     G +LPT  SDE+RPFVRR+PEFKFW SI +AF I F+M
Sbjct: 93  YLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMM 152

Query: 128 TFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAESKS 187
           TFF  FDVPVFWPILLFYWV+LF LTMR+QI HMIKY+YVPFSFGK +Y  K A  ES  
Sbjct: 153 TFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-KYGKKPAPTESSE 211


>AT2G18240.1 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=221
          Length = 221

 Score =  209 bits (533), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 132/177 (74%), Gaps = 5/177 (2%)

Query: 2   EVGGEVSPETAIS----RWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVE 57
           E G E   +T ++    +W++  S+ +Q+ LD++ P+++RRW+  LV A IY+ RVY V 
Sbjct: 4   EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63

Query: 58  GFYIVSYALGIYILNLLIGFLSPQVDPEVYD-DGPTLPTSGSDEFRPFVRRIPEFKFWYS 116
           G++++SY L  YILNLLIGFLSP+VDPE+   D  +LP   SDE++PFVRR+PEFKFWY+
Sbjct: 64  GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123

Query: 117 ITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGK 173
            TKAF +AFVMTFFS  DVPVFWPILL YW+VL++LTM+R I HM KY+Y PF   K
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180


>AT2G18240.2 | Symbols:  | Rer1 family protein |
           chr2:7935466-7936464 FORWARD LENGTH=220
          Length = 220

 Score =  209 bits (532), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 132/177 (74%), Gaps = 5/177 (2%)

Query: 2   EVGGEVSPETAIS----RWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVE 57
           E G E   +T ++    +W++  S+ +Q+ LD++ P+++RRW+  LV A IY+ RVY V 
Sbjct: 4   EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63

Query: 58  GFYIVSYALGIYILNLLIGFLSPQVDPEVYD-DGPTLPTSGSDEFRPFVRRIPEFKFWYS 116
           G++++SY L  YILNLLIGFLSP+VDPE+   D  +LP   SDE++PFVRR+PEFKFWY+
Sbjct: 64  GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123

Query: 117 ITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGK 173
            TKAF +AFVMTFFS  DVPVFWPILL YW+VL++LTM+R I HM KY+Y PF   K
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180