Miyakogusa Predicted Gene

Lj2g3v1902090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1902090.1 Non Chatacterized Hit- tr|I3SFH9|I3SFH9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,71.67,9e-17,
,NODE_54688_length_819_cov_69.838829.path1.1
         (60 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |...    70   3e-13
AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |...    70   3e-13
AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |...    57   3e-09
AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |...    57   3e-09
AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |...    55   8e-09
AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |...    49   6e-07
AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    47   3e-06

>AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=331
          Length = 331

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 37/40 (92%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYEVEPE 40
           MDP+DVETVLLLMRNLSINL+SP FEDHRRLL+SY++  E
Sbjct: 271 MDPIDVETVLLLMRNLSINLSSPDFEDHRRLLSSYDIGSE 310


>AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=330
          Length = 330

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 37/40 (92%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYEVEPE 40
           MDP+DVETVLLLMRNLSINL+SP FEDHRRLL+SY++  E
Sbjct: 270 MDPIDVETVLLLMRNLSINLSSPDFEDHRRLLSSYDIGSE 309


>AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=303
          Length = 303

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 33/38 (86%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYEVE 38
           MDP+++ETVLLLM+NLS+NLTSP F + RRL++SY  +
Sbjct: 263 MDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSAK 300


>AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=302
          Length = 302

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 33/38 (86%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYEVE 38
           MDP+++ETVLLLM+NLS+NLTSP F + RRL++SY  +
Sbjct: 262 MDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSAK 299


>AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:190596-192139 FORWARD LENGTH=287
          Length = 287

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 33/35 (94%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASY 35
           MDP+++ETVLLLM+NLS+NLTSP F++ R+L++SY
Sbjct: 250 MDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSY 284


>AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948270 FORWARD LENGTH=298
          Length = 298

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 30/36 (83%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYE 36
           MDP++ ETVLLLMRNL++NL++P  E  R++L SY+
Sbjct: 241 MDPINFETVLLLMRNLTVNLSNPDLESTRKVLLSYD 276


>AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651204
           FORWARD LENGTH=283
          Length = 283

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query: 1   MDPLDVETVLLLMRNLSINLTSPGFEDHRRLL 32
           MDP++ ETVLLLMRNL++NL++P FE  R+++
Sbjct: 250 MDPINFETVLLLMRNLTVNLSNPDFEPTRKVM 281