Miyakogusa Predicted Gene
- Lj2g3v1879770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1879770.1 Non Chatacterized Hit- tr|I1I7U8|I1I7U8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.42,4e-18,coiled-coil,NULL; Remorin_C,Remorin, C-terminal;
seg,NULL,CUFF.38005.1
(324 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45207.2 | Symbols: | Remorin family protein | chr1:17130703... 96 4e-20
AT4G36970.1 | Symbols: | Remorin family protein | chr4:17429826... 91 1e-18
AT2G02170.2 | Symbols: | Remorin family protein | chr2:556595-5... 58 7e-09
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556595-5... 58 7e-09
AT1G30320.1 | Symbols: | Remorin family protein | chr1:10680348... 58 7e-09
AT1G53860.1 | Symbols: | Remorin family protein | chr1:20107165... 58 8e-09
AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333137... 54 2e-07
AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301623... 48 9e-06
>AT1G45207.2 | Symbols: | Remorin family protein |
chr1:17130703-17133548 REVERSE LENGTH=555
Length = 555
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 24/180 (13%)
Query: 125 QDEKCNGTKNEETEVSPFLRRDQGTQMSLPET------ENDXXXXXXXXXXXXXMNPKNC 178
QD+ K+ T+ RRD TQMS PE E N
Sbjct: 346 QDDIHESMKDAATDAQAVSRRDMATQMS-PEGSIRFSPERQCSFSPSSPSPLPISELLNA 404
Query: 179 NSSKLEVRDVQVDNQAPVNKWSKQN----HLHDEDLQRSSKEAQASSLDIAESTLDISKF 234
+S++ EV+D+QVD + V +WSK++ H + ++ + D+ +T
Sbjct: 405 HSNRAEVKDLQVDEKVTVTRWSKKHRGLYHGNGSKMRDHVHGKATNHEDLTCAT------ 458
Query: 235 HREEAKIIAWESLQKAKAEAAIRKLE-----MKLEKKRSSSMDKILKKLRRAQMKAEKMR 289
EEA+II+WE+LQKAKAEAAIRKLE MKLEKKRSSSM+KI++K++ A+ +AE+MR
Sbjct: 459 --EEARIISWENLQKAKAEAAIRKLEKYFPQMKLEKKRSSSMEKIMRKVKSAEKRAEEMR 516
>AT4G36970.1 | Symbols: | Remorin family protein |
chr4:17429826-17431459 REVERSE LENGTH=427
Length = 427
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 18/178 (10%)
Query: 140 SPFL-RRDQGTQMSLPETENDXXXXXXXXXXXXXMNPKNCNSSKLEVRDVQVDNQAPVNK 198
SP + RRD TQMS PE + + P C + EVR+V++D A + K
Sbjct: 219 SPVVSRRDMATQMS-PEETSPNNNNQSPPLVVSVIEPPPC---RGEVREVKMDKGARMIK 274
Query: 199 WSKQNHLHDEDLQRSSKEAQ--------ASSLDIAESTLDISKFHREEAKIIAWESLQKA 250
K+ + ++R E + +SS DI+E + +SK REEAKI AWE+LQKA
Sbjct: 275 RPKRRVMSSRIIRREQPEVEDNSEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKA 334
Query: 251 KAEAAIRKLEMKLEKKRSSSMDKILKKLRRAQMKAEKMR----SLTPVQQQG-HRVCK 303
KAEAAIRKLE+KLEKK+S+SMDKIL KL+ A++KA++MR S QQQG H++ +
Sbjct: 335 KAEAAIRKLEVKLEKKKSASMDKILNKLQTAKIKAQEMRRSSVSSEHEQQQGNHQISR 392
>AT2G02170.2 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%)
Query: 212 RSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSM 271
+S EA+A++ + AE +++F REE KI AWE+ QKAK+EA ++K E+K+E+ + +
Sbjct: 370 KSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQ 429
Query: 272 DKILKKL 278
D+++KKL
Sbjct: 430 DRLMKKL 436
>AT2G02170.1 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%)
Query: 212 RSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSM 271
+S EA+A++ + AE +++F REE KI AWE+ QKAK+EA ++K E+K+E+ + +
Sbjct: 370 KSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQ 429
Query: 272 DKILKKL 278
D+++KKL
Sbjct: 430 DRLMKKL 436
>AT1G30320.1 | Symbols: | Remorin family protein |
chr1:10680348-10682852 FORWARD LENGTH=509
Length = 509
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 58/84 (69%)
Query: 208 EDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKR 267
E+ Q+ E +A++ + AE + +++ REE +I AWES +KAK EA +R++E K+E+ +
Sbjct: 388 EEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMK 447
Query: 268 SSSMDKILKKLRRAQMKAEKMRSL 291
+ + KI+KK+ A+ ++E+ R+L
Sbjct: 448 AEAEAKIMKKIALAKQRSEEKRAL 471
>AT1G53860.1 | Symbols: | Remorin family protein |
chr1:20107165-20109458 REVERSE LENGTH=442
Length = 442
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 207 DEDLQRSSKEAQASSLDIAESTLDIS-KFHREEAKIIAWESLQKAKAEAAIRKLEMKLEK 265
+ +L+RS E++A D + + ++ REEAKI AW +L+ AKAEA RKLE+K++K
Sbjct: 314 ESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVNLENAKAEAQSRKLEVKIQK 373
Query: 266 KRSSSMDKILKKLRRAQMKAEKMRS 290
RS+ +K++K++ +AE R+
Sbjct: 374 MRSNLEEKLMKRMDMVHRRAEDWRA 398
>AT1G67590.1 | Symbols: | Remorin family protein |
chr1:25333137-25334472 REVERSE LENGTH=347
Length = 347
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 18/148 (12%)
Query: 184 EVRDVQVDNQAPVNKWSKQNHLHDEDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIA 243
EVR V+ +N VN + + S+ EA+A + D AE ++++ REE KI A
Sbjct: 204 EVRRVESNNSEKVNGFVESKKAM------SAMEARAMAWDEAERAKFMARYKREEVKIQA 257
Query: 244 WESLQKAKAEAAIRKLEMKLEKKRSSSMDKILKKL---------RRAQMKAEKMRSLTPV 294
WE+ +K KAE ++K+E+K E+ ++ + +K+ KL RRA +A+
Sbjct: 258 WENHEKRKAEMEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKT 317
Query: 295 QQQGHRVCKTWKV---FSFPKWSPSRCF 319
++ + ++ + FSF PSRC+
Sbjct: 318 SEKADYIRRSGHLPSSFSFSFKLPSRCW 345
>AT3G57540.1 | Symbols: | Remorin family protein |
chr3:21301623-21302924 REVERSE LENGTH=296
Length = 296
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 210 LQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSS 269
++R EA+ ++ A+ ++F R++A I W + Q +A + ++K+E KLE +R+
Sbjct: 180 VKREEVEAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAK 239
Query: 270 SMDKILKKLRRAQMKAEKMRSLTPVQQQGHRVCKTWKVFSF 310
+M+K K+ +AQ KAE+ R+ T ++G V + +V +
Sbjct: 240 AMEKTQNKVAKAQRKAEERRA-TAEGKRGTEVARVLEVANL 279