Miyakogusa Predicted Gene
- Lj2g3v1876630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1876630.1 Non Chatacterized Hit- tr|F6HHL2|F6HHL2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.27,1e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; CG3594-PA,NULL; FAMILY NOT NAM,CUFF.37999.1
(369 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 523 e-149
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 523 e-149
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 7e-33
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 8e-33
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 5e-31
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 130 1e-30
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 130 1e-30
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 130 1e-30
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 129 5e-30
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 128 5e-30
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 126 3e-29
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 126 3e-29
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 125 4e-29
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 125 4e-29
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 119 3e-27
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 115 6e-26
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 103 2e-22
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 102 4e-22
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 93 3e-19
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 4e-17
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 3e-16
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 5e-16
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 5e-16
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 3e-15
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 72 8e-13
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 2e-12
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 2e-12
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 2e-12
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 2e-12
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 70 2e-12
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 70 3e-12
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 70 3e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 69 6e-12
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 69 8e-12
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-11
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 63 3e-10
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 63 3e-10
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 63 3e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 8e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 62 8e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 60 3e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 59 5e-09
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 59 6e-09
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 59 7e-09
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 58 1e-08
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 55 6e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 1e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 1e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 1e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 54 2e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 54 2e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 54 2e-07
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 52 5e-07
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 51 2e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 50 2e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 49 5e-06
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 49 5e-06
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 49 5e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 5e-06
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 49 5e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 49 6e-06
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 49 7e-06
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 49 7e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 49 8e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-05
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/379 (69%), Positives = 304/379 (80%), Gaps = 13/379 (3%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
+RKLVVLGIPW++D+DGLK+YMSKFG+LEDCIVMK+R+TGRSRGFGYVTF S +DAKN L
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
EH LGNR+LEVKVATPKEEM+ P KKV RIF+ARIP SV+E+ FRSHFE+YG+ITDLY
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121
Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKP------- 175
MPKD SK HRGIGFIT+++ADSVE+LM++TH+L G+TV VDRATPKEDD P
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 176 IXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEP-AREVGKK 234
+ AY+AYISA TRYAALGAPTLYDNP + YGRGEP R +G K
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK 241
Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP 294
IFVG LPQEA+ +DLR YFGRFGHI D YIP+D KRSGHRGFGFVTFAE+GVADRVARR
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301
Query: 295 HEICGHQVAIDSATPLDDAGPS--GNFMLNSM--DSFGGFGGPVRPYGRMYGSLDYDDWG 350
HEICG +VAIDSATPLD+AGPS + ML+S + FGG+GGP+R +GRMYG + DDWG
Sbjct: 302 HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWG 361
Query: 351 YGVPRGRPPSRADWRYRPY 369
YG+P R PSR D RYRPY
Sbjct: 362 YGMPNAR-PSRPDRRYRPY 379
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/379 (69%), Positives = 304/379 (80%), Gaps = 13/379 (3%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
+RKLVVLGIPW++D+DGLK+YMSKFG+LEDCIVMK+R+TGRSRGFGYVTF S +DAKN L
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
EH LGNR+LEVKVATPKEEM+ P KKV RIF+ARIP SV+E+ FRSHFE+YG+ITDLY
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121
Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKP------- 175
MPKD SK HRGIGFIT+++ADSVE+LM++TH+L G+TV VDRATPKEDD P
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 176 IXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEP-AREVGKK 234
+ AY+AYISA TRYAALGAPTLYDNP + YGRGEP R +G K
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK 241
Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP 294
IFVG LPQEA+ +DLR YFGRFGHI D YIP+D KRSGHRGFGFVTFAE+GVADRVARR
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301
Query: 295 HEICGHQVAIDSATPLDDAGPS--GNFMLNSM--DSFGGFGGPVRPYGRMYGSLDYDDWG 350
HEICG +VAIDSATPLD+AGPS + ML+S + FGG+GGP+R +GRMYG + DDWG
Sbjct: 302 HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWG 361
Query: 351 YGVPRGRPPSRADWRYRPY 369
YG+P R PSR D RYRPY
Sbjct: 362 YGMPNAR-PSRPDRRYRPY 379
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 17/185 (9%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+ KL + GI W+ + + LKEY S FGE+ + +++K+R TGR+RGFG+V F A+ V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN---------------RIFIARIPPSVTEA 106
++ +HN+ R++E K A P+++ V + N +IF+ +P SVTE+
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDR 165
F+++FE++G TD+ + D ++ RG GFITY + ++VE L+K HEL G V V R
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
Query: 166 ATPKE 170
A PKE
Sbjct: 183 AVPKE 187
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 41/226 (18%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E + +F +G++ + + KD+ + RG GF+ +A+ E ++ E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D ++ + + G+P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQ-------------------------NMVNRSNSSSIQGSP 101
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
G P R +KIFVG LP T D + YF +FG DV + D
Sbjct: 102 ------------GGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-DAGPS 316
RGFGF+T+ +E+ V + + HE+ G V + A P + GPS
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPS 193
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
RK+ V G+P V K Y +FG D +VM + T R RGFG++T+ S + + V L
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRS 195
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 17/185 (9%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+ KL + GI W+ + + LKEY S FGE+ + +++K+R TGR+RGFG+V F A+ V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN---------------RIFIARIPPSVTEA 106
++ +HN+ R++E K A P+++ V + N +IF+ +P SVTE+
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDR 165
F+++FE++G TD+ + D ++ RG GFITY + ++VE L+K HEL G V V R
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
Query: 166 ATPKE 170
A PKE
Sbjct: 183 AVPKE 187
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 41/226 (18%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E + +F +G++ + + KD+ + RG GF+ +A+ E ++ E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D ++ + + G+P
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQ-------------------------NMVNRSNSSSIQGSP 101
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
G P R +KIFVG LP T D + YF +FG DV + D
Sbjct: 102 ------------GGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-DAGPS 316
RGFGF+T+ +E+ V + + HE+ G V + A P + GPS
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPS 193
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
RK+ V G+P V K Y +FG D +VM + T R RGFG++T+ S + + V L
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
H L +M+EVK A PKE P +
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRS 195
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 17/186 (9%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+Q KL V GI WE D D L+E+ + +GE+ IVM+++ TGR RGFG+V F+ V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK----------------KVNRIFIARIPPSVTE 105
L +H++ R ++VK A +EE + + K +IF+ +PP++T+
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123
Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
FR +FE YG +TD+ + DQ + RG GF+++ + D+V++++ +T H+L G V V
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 165 RATPKE 170
RA PK+
Sbjct: 184 RALPKD 189
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++F+ I E R HF YG+++ + +D+ + RG GF+ +++ ++ +++E
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++ V V RA +E+ +S T
Sbjct: 67 KHSIDTREVDVKRAMSREEQ--------------------------QVSGRT-------- 92
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
N + G A KKIFVG LP T E+ RQYF +G + DV I D +
Sbjct: 93 ---GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNR 149
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD 311
RGFGFV+F +ED V + + H++ G QV + A P D
Sbjct: 150 PRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG + E + LR++F +G + + RD RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 294 PHEICGHQVAIDSATPLDD---AGPSGNFMLNSMDSFGG 329
H I +V + A ++ +G +GN LN+ S GG
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTGN--LNTSRSSGG 103
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 15/184 (8%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
ME KL + GI WE D L++Y FGE+ + ++MK+RATGR+RGFG+V F + A+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEAT 107
V+ ++H + +++E K A P+++ K N +IF+ + SVTEA
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 108 FRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRA 166
F+ +F ++G ITD+ + D R++ RG GFI+Y + ++V+ ++++T HEL G V V A
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 167 TPKE 170
PK+
Sbjct: 182 VPKD 185
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 47/239 (19%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I +E R +F +G++ + + KD+ + RG GF+ +A+ + E ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D +N S+
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHV---------------------VFNKSNSSL--------- 96
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
+G P KKIFVG L T + ++YF +FG I DV + D +
Sbjct: 97 -----------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR 145
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
RGFGF+++ + D+V ++ HE+ G V + A P D A N M N M +SFG
Sbjct: 146 PRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 201
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 15/184 (8%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
ME KL + GI WE D L++Y FGE+ + ++MK+RATGR+RGFG+V F + A+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 61 VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEAT 107
V+ ++H + +++E K A P+++ K N +IF+ + SVTEA
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 108 FRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRA 166
F+ +F ++G ITD+ + D R++ RG GFI+Y + ++V+ ++++T HEL G V V A
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Query: 167 TPKE 170
PK+
Sbjct: 182 VPKD 185
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 47/239 (19%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I +E R +F +G++ + + KD+ + RG GF+ +A+ + E ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++G V +A P++D +N S+
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHV---------------------VFNKSNSSL--------- 96
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
+G P KKIFVG L T + ++YF +FG I DV + D +
Sbjct: 97 -----------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR 145
Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
RGFGF+++ + D+V ++ HE+ G V + A P D A N M N M +SFG
Sbjct: 146 PRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 201
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 17/186 (9%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+Q KL + GI W+ D + L+EY S FGE+ VM+E+ATGR RGFG+V F+ V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVK----------------KVNRIFIARIPPSVTE 105
L +H++ NR ++VK A +EE + + +IF+ +PP++T
Sbjct: 64 LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123
Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
FR++FE YG ++D + DQ ++ RG GF+++ + DSV+ ++ +T H+L G V V
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
Query: 165 RATPKE 170
RA PK+
Sbjct: 184 RALPKD 189
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 38/220 (17%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I E R +F +G++ + + +++ + RG GF+ +++ ++ ++++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++ V V RA +E+ S R A
Sbjct: 67 KHHIDNRDVDVKRAMSREEQ----------------------------SPAGRSGTFNAS 98
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
+D+ +V KKIFVG LP T+++ R YF +G + D I D
Sbjct: 99 RNFDSGANVRT---------KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQR 149
Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD 311
RGFGFV+F +ED V + + H++ G QV + A P D
Sbjct: 150 PRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+F+G + + LR+YF FG +L V + R+ RGFGFV F++ V DRV +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 294 PHEICGHQVAIDSATPLDDAGPSG 317
H I V + A ++ P+G
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAG 90
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 28/198 (14%)
Query: 1 MEQR--------KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
MEQ+ KL + GI W+ D + L+EY K+G+L + ++M++R TGR+RGFG++ F
Sbjct: 1 MEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 53 TSVDDAKNVLSIEHNLGNRMLEVKVATPKEEMK------APV-------------KKVNR 93
A+ V+ +H + R +E K A P+++ + +P+ + +
Sbjct: 61 ADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKK 120
Query: 94 IFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET 153
IF+ +P S+TEA F+++F+++G I D+ + D ++ RG GFIT+ + +SV+ ++ +T
Sbjct: 121 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 180
Query: 154 -HELEGSTVVVDRATPKE 170
HEL G V V RA PKE
Sbjct: 181 FHELNGKMVEVKRAVPKE 198
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 82 EEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYA 141
E+ + ++FI I E + +F KYGD+ + + +D+ + RG GFI +A
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 61
Query: 142 NADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYIS 201
+ E ++ + H ++G TV +A P++D
Sbjct: 62 DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ----------------------------Q 93
Query: 202 ATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILD 261
R+A+ P +P S G G AR KKIFVG LP T + + YF +FG I D
Sbjct: 94 VLKRHAS---PMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGTIAD 147
Query: 262 VYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
V + D RGFGF+TF + D V + HE+ G V + A P
Sbjct: 148 VVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVP 196
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 226 EPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDG 285
E A ++GK +F+G + + E L++YFG++G +++ I RD RGFGF+ FA+
Sbjct: 6 ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 64
Query: 286 VADRVARRPHEICGHQVAIDSATPLDD 312
VA+RV H I G V A P DD
Sbjct: 65 VAERVIMDKHIIDGRTVEAKKAVPRDD 91
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 111/186 (59%), Gaps = 20/186 (10%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + L+EY K+G+L + ++M++R TGR+RGFG++ F A+ V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 65 EHNLGNRMLEVKVATPKEEMK------APV-------------KKVNRIFIARIPPSVTE 105
+H + R +E K A P+++ + +P+ + +IF+ +P S+TE
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
A F+++F+++G I D+ + D ++ RG GFIT+ + +SV+ ++ +T HEL G V V
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 165 RATPKE 170
RA PKE
Sbjct: 196 RAVPKE 201
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 35/232 (15%)
Query: 79 TPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFI 138
P+E+ + ++FI I E + +F KYGD+ + + +D+ + RG GFI
Sbjct: 2 NPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 139 TYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNA 198
+A+ E ++ + H ++G TV +A P++D
Sbjct: 62 VFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ-------------------------- 95
Query: 199 YISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGH 258
R+A+ P +P S G G AR KKIFVG LP T + + YF +FG
Sbjct: 96 --QVLKRHAS---PMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGT 147
Query: 259 ILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
I DV + D RGFGF+TF + D V + HE+ G V + A P
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVP 199
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 226 EPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDG 285
E A ++GK +F+G + + E L++YFG++G +++ I RD RGFGF+ FA+
Sbjct: 9 ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 286 VADRVARRPHEICGHQVAIDSATPLDD 312
VA+RV H I G V A P DD
Sbjct: 68 VAERVIMDKHIIDGRTVEAKKAVPRDD 94
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + K Y +FG + D +VM + T R RGFG++TF S + VL
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 63 SIEHNLGNRMLEVKVATPKE 82
H L +M+EVK A PKE
Sbjct: 182 KTFHELNGKMVEVKRAVPKE 201
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F ++ V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 65 EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
+H + R +E K A P+++ + +PV + +IF+ +P S+TE F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
+++F+++G I D+ + D ++ RG GFIT+ + D+V+ ++ +T HEL G V V RA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 168 PKE 170
PKE
Sbjct: 187 PKE 189
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E R +F YGD+ + + +D+ + RG GFI +A+ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D R+A+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
P +P V+G G KKIFVG LP T E+ + YF +FG I DV + D
Sbjct: 95 -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
RGFGF+TF D DRV + HE+ G V + A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + + K Y +FG + D +VM + T R RGFG++TF S D VL
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
H L +++EVK A PKE +PV +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+F+G + + E LR YF +G +++ I RD RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 294 PHEICGHQVAIDSATPLDD 312
H I G V A P DD
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F ++ V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 65 EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
+H + R +E K A P+++ + +PV + +IF+ +P S+TE F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
+++F+++G I D+ + D ++ RG GFIT+ + D+V+ ++ +T HEL G V V RA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 168 PKE 170
PKE
Sbjct: 187 PKE 189
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E R +F YGD+ + + +D+ + RG GFI +A+ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D R+A+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
P +P V+G G KKIFVG LP T E+ + YF +FG I DV + D
Sbjct: 95 -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
RGFGF+TF D DRV + HE+ G V + A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + + K Y +FG + D +VM + T R RGFG++TF S D VL
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
H L +++EVK A PKE +PV +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+F+G + + E LR YF +G +++ I RD RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 294 PHEICGHQVAIDSATPLDD 312
H I G V A P DD
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F ++ V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 65 EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
+H + R +E K A P+++ + +PV + +IF+ +P S+TE F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
+++F+++G I D+ + D ++ RG GFIT+ + D+V+ ++ +T HEL G V V RA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 168 PKE 170
PKE
Sbjct: 187 PKE 189
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E R +F YGD+ + + +D+ + RG GFI +A+ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D R+A+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
P +P V+G G KKIFVG LP T E+ + YF +FG I DV + D
Sbjct: 95 -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
RGFGF+TF D DRV + HE+ G V + A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + + K Y +FG + D +VM + T R RGFG++TF S D VL
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
H L +++EVK A PKE +PV +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+F+G + + E LR YF +G +++ I RD RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 294 PHEICGHQVAIDSATPLDD 312
H I G V A P DD
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F ++ V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 65 EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
+H + R +E K A P+++ + +PV + +IF+ +P S+TE F
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
+++F+++G I D+ + D ++ RG GFIT+ + D+V+ ++ +T HEL G V V RA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 168 PKE 170
PKE
Sbjct: 187 PKE 189
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)
Query: 91 VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
+ ++FI I E R +F YGD+ + + +D+ + RG GFI +A+ E ++
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
+ H ++G TV +A P++D R+A+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94
Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
P +P V+G G KKIFVG LP T E+ + YF +FG I DV + D
Sbjct: 95 -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147
Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
RGFGF+TF D DRV + HE+ G V + A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+P + + K Y +FG + D +VM + T R RGFG++TF S D VL
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
H L +++EVK A PKE +PV +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+F+G + + E LR YF +G +++ I RD RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 294 PHEICGHQVAIDSATPLDD 312
H I G V A P DD
Sbjct: 67 KHIIDGRTVEAKKAVPRDD 85
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 111/206 (53%), Gaps = 37/206 (17%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
ME KL + GI WE D L++Y FGE+ + ++MK+RATGR+RGFG+V F + A+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 61 VLSIEHNLGNRML----------------------EVKVATPKEEMKAPVKKVN------ 92
V+ ++H + ++L E K A P+++ K N
Sbjct: 63 VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDD-HVVFNKSNSSLQGS 121
Query: 93 -------RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADS 145
+IF+ + SVTEA F+ +F ++G ITD+ + D R++ RG GFI+Y + ++
Sbjct: 122 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 181
Query: 146 VENLMKET-HELEGSTVVVDRATPKE 170
V+ ++++T HEL G V V A PK+
Sbjct: 182 VDKVLQKTFHELNGKMVEVKLAVPKD 207
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 31/242 (12%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++FI I +E R +F +G++ + + KD+ + RG GF+ +A+ + E ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 153 THELEGSTVV---VDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAAL 209
H ++G +V V + D K I +N S+
Sbjct: 67 KHIIDGKILVDSIVYNQLCRSD--KCISLSEVVEAKKAVPRDDHVVFNKSNSSL------ 118
Query: 210 GAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAK 269
+G P KKIFVG L T + ++YF +FG I DV + D +
Sbjct: 119 --------------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHR 164
Query: 270 RSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DS 326
RGFGF+++ + D+V ++ HE+ G V + A P D A N M N M +S
Sbjct: 165 TQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNS 221
Query: 327 FG 328
FG
Sbjct: 222 FG 223
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V G+ WE + Y KFGE+ D ++M +R TG RGFG+VTF A+ VL
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVK---KVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
+H + +R +++K P+ + +K K +IF+ +PP + E +++F YGDI +
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKE--THELEGSTVVVDRATPK 169
+ D + RG GF+T+ DSV+ L + HEL V + RA PK
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 52/219 (23%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++F+ + T TF ++F K+G++ D + D+ + RG GF+T+A++ E +++E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
H ++ V + R P+ D I +S T
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKA---------------------VSKT--------- 156
Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
+KIFVG LP ++L+ YF +G I++ I D
Sbjct: 157 --------------------RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGR 196
Query: 273 HRGFGFVTFAEDGVADRVAR--RPHEICGHQVAIDSATP 309
RGFGFVTF + DR+ + HE+ QV I A P
Sbjct: 197 SRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP 235
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+P ++ D LK Y +G++ + +M + TGRSRGFG+VTF + D + S
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 64 --IEHNLGNRMLEVKVATPK 81
H LG++ +E+K A PK
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG + E T E YFG+FG ++D I D RGFGFVTFA+ VA++V
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 294 PHEICGHQVAIDSATPLDD 312
H I +V + P D
Sbjct: 127 DHVIDDRKVDLKRTLPRGD 145
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ V G+ E + ++ K+GE+ D ++MK+R TG+ RGFG+VT+ V+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
H + + +E+K P+ M + K +IF+ IP SV + F+ F ++G++ + +
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKE 170
+D + RG GF+TY + D V++L+ + + EL G+ V + +A PK+
Sbjct: 163 RDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 63/228 (27%)
Query: 88 VKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVE 147
V +IF+ + T A F HF KYG+ITD + KD+++ RG GF+TYA++ V+
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVD 97
Query: 148 NLMKETHELEGSTVVVDRATPK----EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISAT 203
++++ H + G V + R P+ +DFK T
Sbjct: 98 KVIQDNHIIIGKQVEIKRTIPRGSMSSNDFK----------------------------T 129
Query: 204 TRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVY 263
+ G P+ D+ ++ +++F +FG + +
Sbjct: 130 KKIFVGGIPSSVDD-----------------------------DEFKEFFMQFGELKEHQ 160
Query: 264 IPRDAKRSGHRGFGFVTFAEDGVADRVARRPH--EICGHQVAIDSATP 309
I RD RGFGFVT+ + + D + + + E+ G QV I A P
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
+K+ V GIP VD D KE+ +FGEL++ +M++ +TGRSRGFG+VT+ S D ++L+
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 64 IEH--NLGNRMLEVKVATPKE 82
+ L +E+K A PK+
Sbjct: 190 KGNRIELSGTQVEIKKAEPKK 210
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 27/193 (13%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V GI E + LK+Y S++G + + +V KE+ TG+ RGFG+V F + D L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 65 EHNLGNRMLEVKVATPKEE----------MKAPVKKVN----------------RIFIAR 98
H + + ++V+ A K E ++ V+++N +IF+
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126
Query: 99 IPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELE 157
+ + TE F+S+FE++G TD+ + D + RG GF+TY + DSVE +M+ HEL
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELS 186
Query: 158 GSTVVVDRATPKE 170
V V RA PKE
Sbjct: 187 DKRVEVKRAIPKE 199
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
++F+ I +E + +F +YG + + + K++ + RG GF+ +AN V +++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 153 THELEGSTVVVDRATPKEDDFK-PIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGA 211
TH + G V V +A K + ++ P ++ + G
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQ-------------------FLERKVQQMNGGL 107
Query: 212 PTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRS 271
+ N G +R KKIFVG L T E+ + YF RFG DV + D +
Sbjct: 108 REMSSN-------GVTSRT--KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTN 158
Query: 272 GHRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGF 330
RGFGFVT+ +ED V + HE+ +V + A P + + +N S+ F
Sbjct: 159 RPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSF 218
Query: 331 -GGPVRPYGRMYGSL 344
P P YG +
Sbjct: 219 QATPYVPEQNGYGMV 233
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+K+ V G+ + K Y +FG D +VM + T R RGFG+VT+ S D + V+
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 63 SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVT 104
S H L ++ +EVK A PKE +++ N IPPS +
Sbjct: 180 SNFHELSDKRVEVKRAIPKEGIQS-----NNGNAVNIPPSYS 216
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ + G+ + ++ K+GE+ D ++M++R TG+ RGFG++TF V+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVK--KVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
H + + +E+K PK K K +IF+ IP +VTE + F KYG++ +
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139
Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKE 170
+ +D + RG GF+ + + + V+ L+ + + ++ + V + +A PK+
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKK 189
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
KIF+G L ++ T ++FG++G I D I RD RGFGF+TFA+ V D+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 294 PHEICGHQVAIDSATPLDDAG 314
H I G QV I P G
Sbjct: 80 THVINGKQVEIKRTIPKGAGG 100
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
++ +K+ V GIP V D LK++ +K+G + + V+++ T RSRGFG+V F S +
Sbjct: 106 IKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Query: 61 VLSIEH--NLGNRMLEVKVATPKEEMK 85
+LS + ++ + +E+K A PK+ +
Sbjct: 166 LLSKGNMIDMADTQVEIKKAEPKKSLN 192
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 233 KKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR 292
KKIFVG +P T ++L+ +F ++G++++ + RD + + RGFGFV F + V D +
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 293 RPH--EICGHQVAIDSATP 309
+ + ++ QV I A P
Sbjct: 169 KGNMIDMADTQVEIKKAEP 187
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ + G+ + ++ K+GE+ D ++M++R TG+ RGFG++TF V+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVK--KVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
H + + +E+K PK K K +IF+ IP +VTE + F KYG++ +
Sbjct: 80 THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139
Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
+ +D + RG GF+ + + + V+ L+ + + ++
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
KIF+G L ++ T ++FG++G I D I RD RGFGF+TFA+ V D+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 294 PHEICGHQVAIDSATPLDDAGPSGN 318
H I G QV I P G GN
Sbjct: 80 THVINGKQVEIKRTIP---KGAGGN 101
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
+IFI + T F HF KYG+ITD + +D+ + RG GFIT+A+ V+ ++++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 153 THELEGSTVVVDRATPK 169
TH + G V + R PK
Sbjct: 80 THVINGKQVEIKRTIPK 96
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 233 KKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR 292
KKIFVG +P T ++L+ +F ++G++++ + RD + + RGFGFV F + V D +
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 293 RPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSF 327
+ + I D+ L G FM+ + F
Sbjct: 169 KGNMID----MADTQVSLYKWGLEFWFMMTYLSWF 199
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
++ +K+ V GIP V D LK++ +K+G + + V+++ T RSRGFG+V F S +
Sbjct: 106 IKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Query: 61 VLS 63
+LS
Sbjct: 166 LLS 168
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 84/359 (23%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P +V + L++ + GE+ + +MK+R +G S+G+ +V F + D A+ +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
H+ E K ++ + NR+FI IP + TE FR E G + ++ +
Sbjct: 177 LHS-----KEFKASS---TANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
KD + T +RG F+ Y N AD S + ++ +LEG+ V A PK
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279
Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
++ ++A A K ++V
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297
Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
++P+ +TE L++ F R G + + P + G R FGFV +AE A + + +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355
Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
+ G + + A P + A P+ ++ +FGGF PYG M L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 84/359 (23%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P +V + L++ + GE+ + +MK+R +G S+G+ +V F + D A+ +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
H+ + ++ + + + NR+FI IP + TE FR E G + ++ +
Sbjct: 177 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
KD + T +RG F+ Y N AD S + ++ +LEG+ V A PK
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279
Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
++ ++A A K ++V
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297
Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
++P+ +TE L++ F R G + + P + G R FGFV +AE A + + +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355
Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
+ G + + A P + A P+ ++ +FGGF PYG M L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTF--TSVDDA 58
+ +L + IP D ++ + G +E+ ++K+ T R+RGF +V + + D
Sbjct: 195 KNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADY 254
Query: 59 KNVLSIEHN--LGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
I+ N L V A PK E A +V +++ IP + + + F++
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314
Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
+G++T + P + K R GF+ YA S +K+T +E+ G + V A P+
Sbjct: 315 HGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 84/359 (23%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P +V + L++ + GE+ + +MK+R +G S+G+ +V F + D A+ +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
H+ + ++ + + + NR+FI IP + TE FR E G + ++ +
Sbjct: 177 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228
Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
KD + T +RG F+ Y N AD S + ++ +LEG+ V A PK
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279
Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
++ ++A A K ++V
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297
Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
++P+ +TE L++ F R G + + P + G R FGFV +AE A + + +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355
Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
+ G + + A P + A P+ ++ +FGGF PYG M L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTF--TSVDDA 58
+ +L + IP D ++ + G +E+ ++K+ T R+RGF +V + + D
Sbjct: 195 KNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADY 254
Query: 59 KNVLSIEHN--LGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
I+ N L V A PK E A +V +++ IP + + + F++
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314
Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
+G++T + P + K R GF+ YA S +K+T +E+ G + V A P+
Sbjct: 315 HGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 90/358 (25%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ + G+P +V + L++ + GE+ + +MK+R +G S+G+ +V F + D A+ +
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
H+ + ++ + + + NR+FI IP + TE FR E G P
Sbjct: 157 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVG-------P 201
Query: 125 KDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXXX 179
D + T +RG F+ Y N AD S + ++ +LEG+ V A PK
Sbjct: 202 GDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK---------- 251
Query: 180 XXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGH 239
++ ++A A K ++V +
Sbjct: 252 ----------------------SSPEHSAAAAQV-------------------KALYVKN 270
Query: 240 LPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHEI 297
+P+ +TE L++ F R G + + P + G R FGFV +AE A + + +E+
Sbjct: 271 IPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYEV 328
Query: 298 CGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
G + + A P + A P+ ++ +FGGF PYG M L
Sbjct: 329 NGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 382
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ D L + ++GE+EDC + ++ +G+S+G+G++ F S A+N L
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 64 I-EHNLGNRMLEVKVAT----PKEEMKAPVKKVN------RIFIARIPPSVTEATFRSHF 112
+ +G RM ++A+ + AP + N +I+++ + + F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGSTVVVDRAT--PK 169
++G+I + + D+ + +G Y + +S + ++E H+ EG + +A PK
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK 307
Query: 170 E 170
+
Sbjct: 308 Q 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
QRK+ V + ++D L E+ S+FGE+E+ + ++ATGR +GF + S++ AK L
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
Query: 63 SIEH 66
H
Sbjct: 286 EEPH 289
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ D L + ++GE+EDC + ++ +G+S+G+G++ F S A+N L
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 64 I-EHNLGNRMLEVKVAT----PKEEMKAPVKKVN------RIFIARIPPSVTEATFRSHF 112
+ +G RM ++A+ + AP + N +I+++ + + F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGSTVVVDRAT--PK 169
++G+I + + D+ + +G Y + +S + ++E H+ EG + +A PK
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK 307
Query: 170 E 170
+
Sbjct: 308 Q 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
QRK+ V + ++D L E+ S+FGE+E+ + ++ATGR +GF + S++ AK L
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
Query: 63 SIEH 66
H
Sbjct: 286 EEPH 289
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ QRKL + G+ + T+GL+ S +G+LE+ IV+ ++ TG+S+G+G+VTF VD A
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131
Query: 61 VLS-IEHNLGNRMLEVKVATPKEE---MKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
L + R+ ++A + + + +I++A +P + +HF YG
Sbjct: 132 ALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
D+ + + D+ + RG Y A+ + + +
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
+ QRKL + G+ + T+GL+ S +G+LE+ IV+ ++ TG+S+G+G+VTF VD A
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131
Query: 61 VLS-IEHNLGNRMLEVKVATPKEE---MKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
L + R+ ++A + + + +I++A +P + +HF YG
Sbjct: 132 ALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
D+ + + D+ + RG Y A+ + + +
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E+ KL V + ++V++ L + G +E V+ R T +SRGFG+VT +SVD+A+
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 62 LSI--EHNLGNRMLEVKVATPKEEM--KAP--VKKVNRIFIARIPPSVTEATFRSHFEKY 115
+ ++L R+L V A P+ +AP + R+++ +P V F ++
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEH 267
Query: 116 GDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRATPK 169
G + + + D+ + RG GF+T ++ D + + + LEG + V+ A +
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 55/315 (17%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E R L + + + VD + L S+ GEL V++ + TG+ G+G++ F S A+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 62 LSIEHNLGNRM------LEVKVATPKEEMKAPVKKVNRIFIARIPPSVT----EATFRSH 111
L + G +M + A+ K + IF+ + P VT + TFR H
Sbjct: 82 LQTYN--GTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 139
Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATPK 169
+ + P RSK G GF+ +A M E + L ST + + ATPK
Sbjct: 140 YSSVRGAKVVTDPSTGRSK---GYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Query: 170 EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPT-LYDNPGSVYGRGEPA 228
++ Y++ T +A+ AP Y P P
Sbjct: 197 KN---------------------VGVQQQYVTKVTVPSAVAAPVQAYVAP--------PE 227
Query: 229 REV-GKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
+V I V +L Q T E+L++ F + G ++ V IP +G+G+V F A
Sbjct: 228 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSA 281
Query: 288 DRVARRPH-EICGHQ 301
+ +R ++ G Q
Sbjct: 282 EEAVQRMQGQVIGQQ 296
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ T+ L E ++GE+EDC + ++ +G+S+G+G++ + S A+N L
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 64 I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
+ +G+RM ++A+ K PV +I+++ +
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254
Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
+ F K+G+I + + D+ + +G Y +++S + ++E H+ EG
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 161 VVVDRA 166
+ +A
Sbjct: 315 LHCQKA 320
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ T+ L E ++GE+EDC + ++ +G+S+G+G++ + S A+N L
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 64 I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
+ +G+RM ++A+ K PV +I+++ +
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254
Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
+ F K+G+I + + D+ + +G Y +++S + ++E H+ EG
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 161 VVVDRA 166
+ +A
Sbjct: 315 LHCQKA 320
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ T+ L E ++GE+EDC + ++ +G+S+G+G++ + S A+N L
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 64 I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
+ +G+RM ++A+ K PV +I+++ +
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254
Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
+ F K+G+I + + D+ + +G Y +++S + ++E H+ EG
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 161 VVVDRA 166
+ +A
Sbjct: 315 LHCQKA 320
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ T+ L E ++GE+EDC + ++ +G+S+G+G++ + S A+N L
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 64 I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
+ +G+RM ++A+ K PV +I+++ +
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254
Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
+ F K+G+I + + D+ + +G Y +++S + ++E H+ EG
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 161 VVVDRA 166
+ +A
Sbjct: 315 LHCQKA 320
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
RK+ V G+ W+ T+ L E ++GE+EDC + ++ +G+S+G+G++ + S A+N L
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 64 I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
+ +G+RM ++A+ K PV +I+++ +
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254
Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
+ F K+G+I + + D+ + +G Y +++S + ++E H+ EG
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 161 VVVDRA 166
+ +A
Sbjct: 315 LHCQKA 320
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V IP + L +F +++ ++K++ T SRG ++ S ++A +++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN N +L+VK A + E + +++F+ +P +V+EA +S F KYG I
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSLFSKYGTIK 133
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
DL + + + +T +G F+ Y + + M+ H++EGSTV
Sbjct: 134 DLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V IP + L +F +++ ++K++ T SRG ++ S ++A +++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN N +L+VK A + E + +++F+ +P +V+EA +S F KYG I
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSLFSKYGTIK 133
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
DL + + + +T +G F+ Y + + M+ H++EGSTV
Sbjct: 134 DLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M K+ V GI + D GL+E SK+GE+ D ++ +R TGRSRGF +VTFTS ++A N
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 61 VLSIE-HNLGNRMLEVKVAT 79
+ ++ +L R + V AT
Sbjct: 91 AMQLDGQDLHGRRIRVNYAT 110
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E+ KL V +P++VD+ L + G +E V+ R T +SRGFG+VT ++V++A+
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 62 L----SIEHNLGNRMLEVKVATPK----EEMKAPVKKVNRIFIARIPPSVTEATFRSHFE 113
+ S E N R L V A P+ E RI++ +P V F
Sbjct: 171 VEKFNSFEVN--GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228
Query: 114 KYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRA 166
++G + D + D+ + RG GF+ +N + V + + LEG + V+ A
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 72 MLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEATFRSHFEKYGDI 118
M+E K A P+++ K N +IF+ + SVTEA F+ +F ++G I
Sbjct: 14 MVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 72
Query: 119 TDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRATPKE 170
TD+ + D R++ RG GFI+Y + ++V+ ++++T HEL G V V A PK+
Sbjct: 73 TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKD 125
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 224 RGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAE 283
+G P KKIFVG L T + ++YF +FG I DV + D + RGFGF+++
Sbjct: 37 QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 96
Query: 284 DGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
+ D+V ++ HE+ G V + A P D A N M N M +SFG
Sbjct: 97 EEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 141
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+K+ V G+ V K+Y ++FG + D +VM + T R RGFG++++ S + V
Sbjct: 44 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 103
Query: 62 LSIE-HNLGNRMLEVKVATPKEEMKAPVK---KVNRIFIARIPPSVTEAT 107
L H L +M+EVK+A PK+ ++ VN +RI + E T
Sbjct: 104 LQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYT 153
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 122/313 (38%), Gaps = 47/313 (15%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E R L + + + VD + L S+ GEL V++ + TG+ G+G++ F S A+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 62 LSIEHNLGNRM------LEVKVATPKEEMKAPVKKVNRIFIARIPPSVT----EATFRSH 111
L + G +M + A+ K + IF+ + P VT + TFR H
Sbjct: 82 LQTYN--GTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 139
Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATPK 169
+ + P RSK G GF+ +A M E + L ST + + ATPK
Sbjct: 140 YSSVRGAKVVTDPSTGRSK---GYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Query: 170 EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAR 229
++ Y+ T + P+ P Y +
Sbjct: 197 KN---------------------VGVQQQYV--TKAVYPVTVPSAVAAPVQAYVAPPESD 233
Query: 230 EVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADR 289
I V +L Q T E+L++ F + G ++ V IP +G+G+V F A+
Sbjct: 234 VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSAEE 287
Query: 290 VARRPH-EICGHQ 301
+R ++ G Q
Sbjct: 288 AVQRMQGQVIGQQ 300
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV--- 61
KL +P+ VD+ L + + F E V+ R TG+SRGF +VT ++V+D +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPV--KKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
L LG R L+V A + K P+ + +++F+ + +VT + F + GD+
Sbjct: 146 LDGTEYLG-RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKE 170
+ D + RG GF+ Y++ +E ++ ELEG + V+ A K+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V +P+ VD+ L + G +E V+ ++ TGRSRGFG+VT +SV + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 65 --EHNLGNRMLEVKVATPKEEMKAPVKK-----------------------VNRIFIARI 99
+ L R L V P + + + NR+++ +
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 100 PPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELE 157
V + S F + G + + + D+ S +G GF+TY ++ V+N +K + +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 158 GSTVVVDRATPK 169
G + V A +
Sbjct: 272 GRQIRVSEAEAR 283
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
M KL + G+ + +D D L+E +K+GE+ D V+ +R TGRSRGFG+VTFTS + A +
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 61 VLSI--EHNLGNRMLEVKVATPK 81
+ +L R+++V A +
Sbjct: 97 AIQALDGRDLHGRVVKVNYANDR 119
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V G+ W D LK+ + FGE+ + V+ +R TGRSRGFG+V+F+ D A N +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 E--HNLGNRMLEVKVATPKEEMKAP 87
L R + V +AT E AP
Sbjct: 96 MDGKELNGRQIRVNLAT--ERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V G+ W D LK+ + FGE+ + V+ +R TGRSRGFG+V+F+ D A N +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 65 E--HNLGNRMLEVKVATPKEEMKAP 87
L R + V +AT E AP
Sbjct: 96 MDGKELNGRQIRVNLAT--ERSSAP 118
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 22/165 (13%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
V +P E+ D LK+ K+G++ +VMK++ +G SR FG+V F S + A +++E
Sbjct: 243 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAA--AVAVEKM 299
Query: 67 ---NLGNRMLEVKVATPK----EEM--KAPVKKVNR--------IFIARIPPSVTEATFR 109
+LG +L V A K EE+ K ++++R +++ + SV + +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH 154
F +YG++T + + + + RG GF+ Y+N + MKE +
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNPEEALLAMKEMN 403
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 56/279 (20%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLE 74
+D L E S FG + C V + GRS+G+G+V F + A+ + L +L
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID---KLNGMLLN 212
Query: 75 ---------VKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPK 125
V+ V +++ +P +T+ + F KYGDI+ + K
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272
Query: 126 DQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPIXXXXXXX 183
DQ S R GF+ + + ++ +++ + L + V RA K D + +
Sbjct: 273 DQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQE 331
Query: 184 XXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQE 243
+R+ L G +++ +L
Sbjct: 332 R------------------ISRFEKLQ---------------------GSNLYLKNLDDS 352
Query: 244 ATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFA 282
E L++ F +G++ + +++ RGFGFV ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYS 390
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 22/165 (13%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
V +P E+ D LK+ K+G++ +VMK++ +G SR FG+V F S + A +++E
Sbjct: 243 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAA--AVAVEKM 299
Query: 67 ---NLGNRMLEVKVATPK----EEM--KAPVKKVNR--------IFIARIPPSVTEATFR 109
+LG +L V A K EE+ K ++++R +++ + SV + +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH 154
F +YG++T + + + + RG GF+ Y+N + MKE +
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNPEEALLAMKEMN 403
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 56/279 (20%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLE 74
+D L E S FG + C V + GRS+G+G+V F + A+ + L +L
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID---KLNGMLLN 212
Query: 75 ---------VKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPK 125
V+ V +++ +P +T+ + F KYGDI+ + K
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272
Query: 126 DQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPIXXXXXXX 183
DQ S R GF+ + + ++ +++ + L + V RA K D + +
Sbjct: 273 DQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQE 331
Query: 184 XXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQE 243
+R+ L G +++ +L
Sbjct: 332 R------------------ISRFEKLQ---------------------GSNLYLKNLDDS 352
Query: 244 ATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFA 282
E L++ F +G++ + +++ RGFGFV ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYS 390
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ V G+ W+V L+ ++G++ +C +M R TGR RGFG++TFT A + +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 65 EH--NLGNRMLEVKVATPK 81
H LGN+++ V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 92 NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK 151
+RIF+ + VTE S F++YG IT+ + + + RG GFIT+ + ++ +K
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 152 ETH--ELEGSTVVVDRATPK 169
H EL + V++A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
++ V G+ W+V L+ ++G++ +C +M R TGR RGFG++TFT A + +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 65 EH--NLGNRMLEVKVATPK 81
H LGN+++ V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 92 NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK 151
+RIF+ + VTE S F++YG IT+ + + + RG GFIT+ + ++ +K
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 152 ETH--ELEGSTVVVDRATPK 169
H EL + V++A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E ++ V G+ EV L+ S+FG++ DC +M ER TGRSRGFG++TF
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 62 LSIEH--NLGNRMLEVKVATPK 81
+ H + G+R++ V A PK
Sbjct: 65 IREMHGRDFGDRVISVNRAEPK 86
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 88 VKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVE 147
K+ +RIF+ + P VT+ F ++GDI D + ++ + RG GFIT+A+ +++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 148 NLMKETH--ELEGSTVVVDRATPK 169
++E H + + V+RA PK
Sbjct: 63 ESIREMHGRDFGDRVISVNRAEPK 86
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYI--PRDAKRSGHRGFGFVTFAEDG 285
A + G +IFVG L E T DL + F RFG ILD I RD RS RGFGF+TFA+
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRS--RGFGFITFADRR 59
Query: 286 VADRVARRPH--EICGHQVAIDSATP 309
D R H + ++++ A P
Sbjct: 60 AMDESIREMHGRDFGDRVISVNRAEP 85
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 15 VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS--IEHNLGNRM 72
V D L S++G + +VM++ GRSRGFG+V F + ++AK + LG++
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKK 271
Query: 73 LEVKVATPKEEMKAPVKKV-------------NRIFIARIPPSVTEATFRSHFEKYGDIT 119
L V A K+E + +K+ + +++ + S+ E R F YG I
Sbjct: 272 LFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIV 331
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPI 176
+ + ++ +G GF+ ++N + + + + ++G +VV A KED K +
Sbjct: 332 SAKVMCHENGRS-KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRL 389
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 112/283 (39%), Gaps = 50/283 (17%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L V + + + L+ FG + C V++E G+S+GFG+V F + A + S
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 66 HN---LGNRMLEVKVATPKEEMK-APVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
H G ++ K E A + +++ + +VT+ + F +YG ++ +
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKETHELE-GSTVVVDRATPKEDDFKPIXXXX 180
+ +D ++ RG GF+ + N ++ + M+ L+ GS + K+D+ + +
Sbjct: 232 VVMRDGMGRS-RGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQK 290
Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
N R++ L +V +L
Sbjct: 291 FSD-------------NFIAKPNMRWSNL--------------------------YVKNL 311
Query: 241 PQEATTEDLRQYFGRFGHILDVYI-PRDAKRSGHRGFGFVTFA 282
+ LR+ FG +G I+ + + RS +GFGFV F+
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCHENGRS--KGFGFVCFS 352
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE TD ++ Y +FGE+ + +++ ++ATG+S+G+G+VTF D A ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E T+++R+YF +FG IL+ I D +G+GFVTF + A R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 294 PHEI 297
P+ +
Sbjct: 78 PNPV 81
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 8 VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
V +P E+ D L++ KFG + +VM+++ +G SR FG+V F + A + + +
Sbjct: 233 VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNG 291
Query: 67 -NLGNRMLEVKVATPKEEMKAPVK------KVNR--------IFIARIPPSVTEATFRSH 111
+LG+ +L V A K E + ++ ++NR +++ + SV + +
Sbjct: 292 ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEM 351
Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTV 161
F +YG++T + + + + RG GF+ Y+N E ++ E+ G +
Sbjct: 352 FSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNP---EEALRALSEMNGKMI 397
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
+ + + +D L E S FG + C V + TGRS+G+G+V F + A+ +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 65 EHNL--GNRMLEVKVATPKEEM----KAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDI 118
+ + ++ + V ++E P + +++ +P + E R F K+G I
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Query: 119 TDLYMPKDQRSKTHRGIGFITY----ANADSVENL 149
+ + +DQ S R GF+ + A A +VE +
Sbjct: 256 SSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 17 TDG-LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLEV 75
T+G L + ++F L + K+ ++GRS +GY F S DA L+IE N +L
Sbjct: 36 TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDAN--LAIEKK-NNSLLNG 92
Query: 76 KVATPKEEMKAPVKKVN---RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTH 132
K+ ++AP + N +F+ +P SVT A + F+K+G+I + + K+
Sbjct: 93 KMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKS- 151
Query: 133 RGIGFITYANADSVENLMKETHELEGSTVVVDR 165
RG GF+ + D+ ++ + ST+V D+
Sbjct: 152 RGYGFVQFEQEDAAHAAIQTLN----STIVADK 180
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
L + + +V D L+E ++FG++ + K+ RG+ +V F + +DA+
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 66 H--NLGNRMLEVKVATPK--------------EEMKAPVKKVNRIFIARIPPSVTEATFR 109
+ G++ L V A K E + + KV+ I++ + +VTE R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRAT 167
HF + G IT + D++ K+ +G GF+ ++ + + +K H G + V A
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKS-KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 168 PKED 171
KED
Sbjct: 381 KKED 384
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 93/188 (49%), Gaps = 21/188 (11%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E+ +L V +P+ + + L + + G + D ++ ++ T RSRGFG+VT S+++AK
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 62 LSI--EHNLGNRMLEVKVATPK-------EEMKAPVKKVNR--------IFIARIPPSVT 104
+ + +G R VKV P+ E M+ ++ NR ++ + ++T
Sbjct: 174 MQMFNSSQIGGRT--VKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 231
Query: 105 EATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVV 162
+ F + + ++ + RG GFI++ +A++V++ + + E+EG +
Sbjct: 232 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 291
Query: 163 VDRATPKE 170
++ A+ +E
Sbjct: 292 LNLASERE 299
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
RK+ V G+PWE + L +GE+E+C V+ ++ATG+++GFG+V F + AK L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 63 S-IEHNLGNRMLEVKVAT 79
+ + NR ++A+
Sbjct: 163 KEPKKRILNRTATCQLAS 180
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
RK+ V G+PWE + L +GE+E+C V+ ++ATG+++GFG+V F + AK L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 63 S-IEHNLGNRMLEVKVAT 79
+ + NR ++A+
Sbjct: 163 KEPKKRILNRTATCQLAS 180
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE TD ++ Y +FGE+ + +++ ++ TG+S+G+G+VTF D A ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E T+++R+YF +FG IL+ I D +G+GFVTF E A R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 294 PHEI 297
P+ +
Sbjct: 78 PNPV 81
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
+ K+ V G+PW T+GL Y +FGE+ V+ + AT RS+GFG+VTF V+ A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 63 -SIEHNLGNRMLEVKVA 78
+ H + R + K+A
Sbjct: 68 ENPNHTIDGRTVNCKLA 84
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
KI+V LP TE L YF RFG I+ + D +GFGFVTF E A R
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 294 P-HEICGHQVAIDSA 307
P H I G V A
Sbjct: 70 PNHTIDGRTVNCKLA 84
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE TD ++ Y +FGE+ + +++ ++ TG+S+G+G+VTF D A ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E T+++R+YF +FG IL+ I D +G+GFVTF E A R
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 294 PHEIC 298
P+ +
Sbjct: 78 PNPVI 82
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
R++ + IP V + L + + + G +E VM ++ +GRSR FG+ T SV+DA V
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV-- 133
Query: 64 IEHNLGNRM--LEVKV--------ATP-----KEEMKAPVKKVNRIFIARIPPSVTEATF 108
+E GN + E+KV ++P + E A V ++++ + +VT+
Sbjct: 134 VEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEML 193
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE--LEGSTVVVDRA 166
+ F + G + + + + G GF+T+++ + VE + + LEG + V++A
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 4 RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
R++ + IP V + L + + + G +E VM ++ +GRSR FG+ T SV+DA V
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV-- 133
Query: 64 IEHNLGNRM--LEVKV--------ATP-----KEEMKAPVKKVNRIFIARIPPSVTEATF 108
+E GN + E+KV ++P + E A V ++++ + +VT+
Sbjct: 134 VEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEML 193
Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE--LEGSTVVVDRA 166
+ F + G + + + + G GF+T+++ + VE + + LEG + V++A
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 10 GIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLG 69
GIP + LK + GE+ + +M+E+ +G +G+ +VTF S D A + +N
Sbjct: 98 GIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTD 157
Query: 70 NRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD-Q 127
R +K +T + + +R+F+ +P + E+ + + G + + +PK+ Q
Sbjct: 158 FRGKRIKCSTTQAK--------HRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQ 209
Query: 128 RSKTHRGIGFITYANADSVE 147
+RG FI Y N E
Sbjct: 210 NMGRNRGFAFIEYYNHACAE 229
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 10 GIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLG 69
GIP + LK + GE+ + +M+E+ +G +G+ +VTF S D A + +N
Sbjct: 98 GIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTD 157
Query: 70 NRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD-Q 127
R +K +T + + +R+F+ +P + E+ + + G + + +PK+ Q
Sbjct: 158 FRGKRIKCSTTQAK--------HRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQ 209
Query: 128 RSKTHRGIGFITYANADSVE 147
+RG FI Y N E
Sbjct: 210 NMGRNRGFAFIEYYNHACAE 229
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+ WE D ++ Y +FGE+ + +V+ ++ TGRS+G+G+VTF + A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 18 DGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDD-AKNVLSIE-HNLGNRMLEV 75
D LK ++G++ +VMK+ G+S+GFG+V F + DD A+ V S+ H ++ V
Sbjct: 229 DDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287
Query: 76 KVATPKEEMKAPVK--------------KVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
A K E + ++ + + +++ + PS+++ + F +G +T
Sbjct: 288 GRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSS 347
Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKED 171
+ +D T +G GF+ +A + M + +E + V A KED
Sbjct: 348 KVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E+ KL V +P + L +F + + ++KE+ T RG ++T + +DA V
Sbjct: 10 ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69
Query: 62 LSIEHNL-----GNRMLEVKVATPKEE----MKAPVKKVNRIFIARIPPSVTEATFRSHF 112
++ HN + L+VK A + E + +++F+ +P +V+E +S F
Sbjct: 70 INSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLF 129
Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
+YG I DL + + +T +G F+ Y + + M+ H +EG+ V
Sbjct: 130 SEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANV 180
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 40/58 (68%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE + +K++ +FGE+ + +V+ ++A+GRS+G+G+VTF + A++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 40/58 (68%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE + +K++ +FGE+ + +V+ ++A+GRS+G+G+VTF + A++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
QR + V G W+ + LK +GE+E+C V+ ++ TGR +G+G+V F + A+ L
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
Query: 63 SI-EHNLGNRMLEVKVATPK-------EEMKAPV 88
E + NR++ +A+ K ++M PV
Sbjct: 467 KRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPV 500
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
E+ KL V +P + L +F + + ++KE+ T RG ++T + +DA V
Sbjct: 10 ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69
Query: 62 LSIEHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
++ HN + L+VK A + E + +++F+ +P +V+E +S F +YG
Sbjct: 70 INSFHNKKTLPGASSPLQVKYADGELE-----RLEHKLFVGMLPKNVSETEVQSLFSEYG 124
Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
I DL + + +T +G F+ Y + + M+ H +EG+ V
Sbjct: 125 TIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANV 171
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 40/58 (68%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE + +K++ +FGE+ + +V+ ++A+GRS+G+G+VTF + A++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V +P + ++ Y + G + + ++K++ TG+ +G +V + + DA +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN G ++V+ A + E ++ ++F+ + TE F ++G +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
D+Y+ +D+ ++ RG GF+ Y++ ++
Sbjct: 239 DVYLMRDEYRQS-RGCGFVKYSSKETA 264
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
GS G R K+FVG +P+ AT E++R YF + G++L+V + +D + +G F
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165
Query: 279 VTFAEDGVADRVARRPH 295
V +A ADR R H
Sbjct: 166 VKYATSKDADRAIRALH 182
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V +P + ++ Y + G + + ++K++ TG+ +G +V + + DA +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN G ++V+ A + E ++ ++F+ + TE F ++G +
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
D+Y+ +D+ ++ RG GF+ Y++ ++
Sbjct: 239 DVYLMRDEYRQS-RGCGFVKYSSKETA 264
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
GS G R K+FVG +P+ AT E++R YF + G++L+V + +D + +G F
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165
Query: 279 VTFAEDGVADRVARRPH 295
V +A ADR R H
Sbjct: 166 VKYATSKDADRAIRALH 182
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL-- 62
+L V IP D L + FG + V + TG SRG GYVT S++ AK +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 63 ---------------SIEHNLGNRML-EVKVATPKEEMKAPVKKVNRIFIARIPPSVTEA 106
S++ N G R EV +TPK+ + + +++++ +P
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLPWFTQPD 226
Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK-ETHELEGSTVVVDR 165
R+HF K+G I + D+++ +R F+++ + + + + + EG ++V
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVRE 286
Query: 166 ATPKEDD 172
K +
Sbjct: 287 GIEKSES 293
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
Q K+ V +PW DGL+ + SKFG + V+ +R TGR+R F +++FTS ++ L
Sbjct: 211 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270
Query: 63 S 63
S
Sbjct: 271 S 271
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL V +P + ++ Y + G + + ++K++ TG+ +G +V + + DA +
Sbjct: 46 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105
Query: 65 EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
HN G ++V+ A + E ++ ++F+ + TE F ++G +
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 163
Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
D+Y+ +D+ ++ RG GF+ Y++ ++
Sbjct: 164 DVYLMRDEYRQS-RGCGFVKYSSKETA 189
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
GS G R K+FVG +P+ AT E++R YF + G++L+V + +D + +G F
Sbjct: 31 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 90
Query: 279 VTFAEDGVADRVARRPH 295
V +A ADR R H
Sbjct: 91 VKYATSKDADRAIRALH 107
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 20 LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH--NLGNRMLEVKV 77
L + +FG C++M++ G+S+GFG+V F + DDA + + ++ V
Sbjct: 240 LNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298
Query: 78 ATPKEEMKAPVKKV--------------NRIFIARIPPSVTEATFRSHFEKYGDITDLYM 123
A K E + +K+ + +++ + SVT+ R HF +G IT +
Sbjct: 299 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358
Query: 124 PKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVV-----VDRATPKED 171
+D S RG GF+ ++ + E + E+ G +V V A KED
Sbjct: 359 MRDP-SGVSRGSGFVAFS---TPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 20 LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH--NLGNRMLEVKV 77
L + +FG C++M++ G+S+GFG+V F + DDA + + ++ V
Sbjct: 240 LNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298
Query: 78 ATPKEEMKAPVKKV--------------NRIFIARIPPSVTEATFRSHFEKYGDITDLYM 123
A K E + +K+ + +++ + SVT+ R HF +G IT +
Sbjct: 299 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358
Query: 124 PKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVV-----VDRATPKED 171
+D S RG GF+ ++ + E + E+ G +V V A KED
Sbjct: 359 MRDP-SGVSRGSGFVAFS---TPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
K+ V G+ WE ++ L+++ ++GE+ + +V+ ++ TGRS+G+G+VTF + A+ +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
K+FVG L E +E LRQ+F ++G IL+ + D +G+GFVTF + A R
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 294 PHEI 297
P I
Sbjct: 85 PTPI 88
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
KL + G+ + GL E SK G++ + ++ +R + RS+GFG+VTF S D+A+ L +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL-M 93
Query: 65 EHN---LGNRMLEVKVATPKEEM 84
E N L R + V A K+ +
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSL 116
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
QR + V G+ W+ + LK +GE+ +C V+ ++ TGR++GFG+V F + A+ L
Sbjct: 162 QRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
Query: 63 -SIEHNLGNRMLEVKVATP-----KEEMKAPVKKV 91
+ E + NR + A P E + PV+ V
Sbjct: 222 KNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K++V +P+ D LK S FGE+ + ++K+ A RS+G+ ++ FTS DDA L+I
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDA--FLAI 98
Query: 65 E----HNLGNRMLEVKVATP 80
E RM+ + +A P
Sbjct: 99 ETMDRRMYNGRMIYIDIAKP 118
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein
6 | chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
K+ V G+ D + LKE FG++ D +V+ +R +G SRGFG+VT+ S++ A N +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 65 EHN 67
N
Sbjct: 97 MQN 99
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE L+ Y +FG++ + +V+ ++++GRS+G+G+VTF + A+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE L+ Y +FG++ + +V+ ++++GRS+G+G+VTF + A+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
Q K+ V +PW DGL+ + SKFG + V+ +R TGR+R F +++FTS ++ L
Sbjct: 212 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 271
Query: 63 S 63
S
Sbjct: 272 S 272
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 22/188 (11%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDC-IVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
+L V IP D L + FG + +V + TG SRG GYVT S++ AK +
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 63 ----------------SIEHNLGNRML-EVKVATPKEEMKAPVKKVNRIFIARIPPSVTE 105
S++ N G R EV +TPK+ + + +++++ +P
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLPWFTQP 226
Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK-ETHELEGSTVVVD 164
R+HF K+G I + D+++ +R F+++ + + + + + EG ++V
Sbjct: 227 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 286
Query: 165 RATPKEDD 172
K +
Sbjct: 287 EGIEKSES 294
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+PWE +GL+ Y +FG++ ++ +R TGRS G+G+VTF + A
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESA 106
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
KI+VG LP E E LR YF +FG I+ V + D + G+GFVTF + A R +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 294 P 294
P
Sbjct: 113 P 113
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
KL + G+ W VD LK+ S FGE+ + + ++ +GRSRGFG+V F DA
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA 95
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVT--FAEDGVADRVAR 292
+ + +LP +A DLR F RFG + D+Y+PR+ RGFGFV +AED A+ + R
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED-AAEAMKR 107
Query: 293 RPHEIC-GHQVAI 304
H++ G ++AI
Sbjct: 108 MNHKVIGGREIAI 120
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE ++ L+ + ++G++ + +V+ ++ TGRS+G+G+VTF + A+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
K+ V G+ WE ++ L+ + ++G++ + +V+ ++ TGRS+G+G+VTF + A+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 6 LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS-I 64
L V + + V L +Y ++ ++ V ++ AT S G+GYV +++ DDA+ + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 65 EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
++ N + +++ + A V +F+ + SV T F G I +
Sbjct: 108 NYSYLNGKM-IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETH 154
D ++ RG GF+ + DS +N +++ +
Sbjct: 167 TDHMGQS-RGYGFVQFDTEDSAKNAIEKLN 195
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 93 RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
R+F+ +P S TE HF K+GDI+++++ D+ +++ RG+ F+ Y +S + M +
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 153 THEL--EGSTVVVDRATPK 169
+L +G T+ + A P+
Sbjct: 288 LDKLPFQGRTLHILPAKPR 306
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 5 KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
K+ V G+PW +GL + +FGE+ V+ +R T RS+G+G+VTF + A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESA 67
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
+ KL + G+ W D L++ + FG++ D V+ +R TGRSRGFG+V F
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
+ KL + G+ W D L++ + FG++ D V+ +R TGRSRGFG+V F
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
+ KL + G+ W D L++ + FG++ D V+ +R TGRSRGFG+V F
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + I + E+ S+ G++ D ++ +R + RSRG GYV F
Sbjct: 229 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 288
Query: 62 LSIEHN--LGNRMLEVKVATPKEEMKAPVKKVN-----------------RIFIARIPPS 102
+++ LG ++ P E K V+ R+++ + +
Sbjct: 289 IALSGQPLLGQPVM----VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHIN 344
Query: 103 VTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
++E R FE +G + + +P+D+ + +G GF+ +A + N + +LE
Sbjct: 345 MSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLE 398
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
2 | chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1 MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
+ KL + G+ W D L++ + FG++ D V+ +R TGRSRGFG+V F
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + +P + + E+ SK G++ D ++ +R + RS+G GY+ F V
Sbjct: 166 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225
Query: 62 LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN------------RIFIARIPPSVTEATFR 109
+++ G L V E + + + N ++++ + +++E R
Sbjct: 226 IALS---GQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLR 282
Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYA---NADSVENLMKETHELEGSTVVV 163
FE +G + + +P D + +G GFI + ++ + + + E+ G T+ V
Sbjct: 283 QIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
+R++ + V +L + EDLR+ F +FG + D+Y+PRD RGFGFV F + A
Sbjct: 31 SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
+R++ + V +L + EDLR+ F +FG + D+Y+PRD RGFGFV F + A
Sbjct: 31 SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 2 EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
+QR + I + E+ S+ G++ D ++ +R + RSRG GYV F
Sbjct: 180 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239
Query: 62 LSIEHN--LGNRMLEVKVATPKEEMKAPVKKVN-----------------RIFIARIPPS 102
+++ LG ++ P E K V+ R+++ + +
Sbjct: 240 IALSGQPLLGQPVM----VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHIN 295
Query: 103 VTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
++E R FE +G + + +P+D+ + +G GF+ +A + N + +LE
Sbjct: 296 MSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLE 349
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTF 281
KIFVG+L T +DLR+YF +FG ++D + + +G+GF+TF
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60