Miyakogusa Predicted Gene

Lj2g3v1876630.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1876630.1 Non Chatacterized Hit- tr|F6HHL2|F6HHL2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.27,1e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; CG3594-PA,NULL; FAMILY NOT NAM,CUFF.37999.1
         (369 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   523   e-149
AT4G36960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   523   e-149
AT3G07810.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   138   7e-33
AT3G07810.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   138   8e-33
AT4G14300.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   132   5e-31
AT5G47620.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   130   1e-30
AT5G47620.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   130   1e-30
AT2G33410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   130   1e-30
AT4G26650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   129   5e-30
AT4G26650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   128   5e-30
AT5G55550.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   126   3e-29
AT5G55550.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   126   3e-29
AT5G55550.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   125   4e-29
AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   125   4e-29
AT5G47620.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   119   3e-27
AT1G17640.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   115   6e-26
AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   103   2e-22
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch...   102   4e-22
AT3G13224.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    93   3e-19
AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    86   4e-17
AT4G00830.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    83   3e-16
AT4G00830.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    82   5e-16
AT4G00830.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    82   5e-16
AT4G00830.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    80   3e-15
AT2G41060.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    76   3e-14
AT2G41060.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    76   3e-14
AT3G15010.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    76   4e-14
AT3G15010.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    76   4e-14
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN...    72   8e-13
AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    70   2e-12
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3...    70   2e-12
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3...    70   2e-12
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3...    70   2e-12
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3...    70   2e-12
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3...    70   2e-12
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-...    70   3e-12
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-...    70   3e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei...    69   6e-12
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3...    69   8e-12
AT5G47620.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    68   1e-11
AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    67   2e-11
AT1G60000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    67   3e-11
AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    65   1e-10
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei...    63   3e-10
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ...    63   3e-10
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ...    63   3e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    62   8e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    62   8e-10
AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   2e-09
AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   2e-09
AT5G04280.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   2e-09
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5...    60   3e-09
AT1G22330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    59   5e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8...    59   5e-09
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1...    59   6e-09
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr...    59   7e-09
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ...    58   1e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ...    58   1e-08
AT1G78260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    58   1e-08
AT5G53720.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    57   2e-08
AT1G78260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    57   2e-08
AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    57   2e-08
AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    57   2e-08
AT3G52660.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    56   4e-08
AT3G52660.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    56   4e-08
AT2G46780.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    56   4e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    55   6e-08
AT1G03457.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   8e-08
AT1G22910.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   1e-07
AT1G22910.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   1e-07
AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing...    54   1e-07
AT1G03457.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   1e-07
AT1G22910.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   1e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |...    54   1e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |...    54   1e-07
AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    54   2e-07
AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding | ch...    54   2e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1...    54   2e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |...    54   2e-07
AT1G76460.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   3e-07
AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    53   3e-07
AT2G22100.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   3e-07
AT4G20030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   3e-07
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei...    52   5e-07
AT1G33470.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   5e-07
AT1G33470.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   6e-07
AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   8e-07
AT5G11412.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   8e-07
AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   1e-06
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact...    51   2e-06
AT1G20880.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   2e-06
AT1G20880.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   2e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |...    50   2e-06
AT5G08695.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   3e-06
AT5G53680.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    49   4e-06
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    49   5e-06
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    49   5e-06
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-...    49   5e-06
AT2G16940.2 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    49   5e-06
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein...    49   5e-06
AT5G09880.1 | Symbols:  | Splicing factor, CC1-like | chr5:30816...    49   6e-06
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...    49   7e-06
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...    49   7e-06
AT2G16940.1 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    49   8e-06
AT3G06970.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   1e-05

>AT4G36960.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:17427349-17429589 FORWARD LENGTH=379
          Length = 379

 Score =  523 bits (1347), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 304/379 (80%), Gaps = 13/379 (3%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           +RKLVVLGIPW++D+DGLK+YMSKFG+LEDCIVMK+R+TGRSRGFGYVTF S +DAKN L
Sbjct: 2   ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
             EH LGNR+LEVKVATPKEEM+ P KKV RIF+ARIP SV+E+ FRSHFE+YG+ITDLY
Sbjct: 62  KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121

Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKP------- 175
           MPKD  SK HRGIGFIT+++ADSVE+LM++TH+L G+TV VDRATPKEDD  P       
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181

Query: 176 IXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEP-AREVGKK 234
           +                  AY+AYISA TRYAALGAPTLYDNP + YGRGEP  R +G K
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK 241

Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP 294
           IFVG LPQEA+ +DLR YFGRFGHI D YIP+D KRSGHRGFGFVTFAE+GVADRVARR 
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301

Query: 295 HEICGHQVAIDSATPLDDAGPS--GNFMLNSM--DSFGGFGGPVRPYGRMYGSLDYDDWG 350
           HEICG +VAIDSATPLD+AGPS   + ML+S   + FGG+GGP+R +GRMYG +  DDWG
Sbjct: 302 HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWG 361

Query: 351 YGVPRGRPPSRADWRYRPY 369
           YG+P  R PSR D RYRPY
Sbjct: 362 YGMPNAR-PSRPDRRYRPY 379


>AT4G36960.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:17427349-17429589 FORWARD LENGTH=379
          Length = 379

 Score =  523 bits (1347), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 304/379 (80%), Gaps = 13/379 (3%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           +RKLVVLGIPW++D+DGLK+YMSKFG+LEDCIVMK+R+TGRSRGFGYVTF S +DAKN L
Sbjct: 2   ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
             EH LGNR+LEVKVATPKEEM+ P KKV RIF+ARIP SV+E+ FRSHFE+YG+ITDLY
Sbjct: 62  KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLY 121

Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVVVDRATPKEDDFKP------- 175
           MPKD  SK HRGIGFIT+++ADSVE+LM++TH+L G+TV VDRATPKEDD  P       
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181

Query: 176 IXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEP-AREVGKK 234
           +                  AY+AYISA TRYAALGAPTLYDNP + YGRGEP  R +G K
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK 241

Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP 294
           IFVG LPQEA+ +DLR YFGRFGHI D YIP+D KRSGHRGFGFVTFAE+GVADRVARR 
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRS 301

Query: 295 HEICGHQVAIDSATPLDDAGPS--GNFMLNSM--DSFGGFGGPVRPYGRMYGSLDYDDWG 350
           HEICG +VAIDSATPLD+AGPS   + ML+S   + FGG+GGP+R +GRMYG +  DDWG
Sbjct: 302 HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWG 361

Query: 351 YGVPRGRPPSRADWRYRPY 369
           YG+P  R PSR D RYRPY
Sbjct: 362 YGMPNAR-PSRPDRRYRPY 379


>AT3G07810.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2492875-2495102 FORWARD LENGTH=495
          Length = 495

 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 17/185 (9%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +  KL + GI W+ + + LKEY S FGE+ + +++K+R TGR+RGFG+V F     A+ V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN---------------RIFIARIPPSVTEA 106
           ++ +HN+  R++E K A P+++    V + N               +IF+  +P SVTE+
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122

Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDR 165
            F+++FE++G  TD+ +  D  ++  RG GFITY + ++VE  L+K  HEL G  V V R
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182

Query: 166 ATPKE 170
           A PKE
Sbjct: 183 AVPKE 187



 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 41/226 (18%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I     E   + +F  +G++ +  + KD+ +   RG GF+ +A+    E ++ E
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++G  V   +A P++D                            ++ +   +  G+P
Sbjct: 67  KHNIDGRLVEAKKAVPRDDQ-------------------------NMVNRSNSSSIQGSP 101

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
                       G P R   +KIFVG LP   T  D + YF +FG   DV +  D     
Sbjct: 102 ------------GGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147

Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-DAGPS 316
            RGFGF+T+ +E+ V   + +  HE+ G  V +  A P +   GPS
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPS 193



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
           RK+ V G+P  V     K Y  +FG   D +VM +  T R RGFG++T+ S +  + V L
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
              H L  +M+EVK A PKE    P + 
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRS 195


>AT3G07810.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2492875-2495052 FORWARD LENGTH=494
          Length = 494

 Score =  138 bits (347), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 17/185 (9%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +  KL + GI W+ + + LKEY S FGE+ + +++K+R TGR+RGFG+V F     A+ V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN---------------RIFIARIPPSVTEA 106
           ++ +HN+  R++E K A P+++    V + N               +IF+  +P SVTE+
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122

Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVEN-LMKETHELEGSTVVVDR 165
            F+++FE++G  TD+ +  D  ++  RG GFITY + ++VE  L+K  HEL G  V V R
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182

Query: 166 ATPKE 170
           A PKE
Sbjct: 183 AVPKE 187



 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 41/226 (18%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I     E   + +F  +G++ +  + KD+ +   RG GF+ +A+    E ++ E
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++G  V   +A P++D                            ++ +   +  G+P
Sbjct: 67  KHNIDGRLVEAKKAVPRDDQ-------------------------NMVNRSNSSSIQGSP 101

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
                       G P R   +KIFVG LP   T  D + YF +FG   DV +  D     
Sbjct: 102 ------------GGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR 147

Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD-DAGPS 316
            RGFGF+T+ +E+ V   + +  HE+ G  V +  A P +   GPS
Sbjct: 148 PRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPS 193



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV-L 62
           RK+ V G+P  V     K Y  +FG   D +VM +  T R RGFG++T+ S +  + V L
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKK 90
              H L  +M+EVK A PKE    P + 
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRS 195


>AT4G14300.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:8231179-8232785 FORWARD LENGTH=411
          Length = 411

 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 17/186 (9%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +Q KL V GI WE D D L+E+ + +GE+   IVM+++ TGR RGFG+V F+       V
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPVK----------------KVNRIFIARIPPSVTE 105
           L  +H++  R ++VK A  +EE +   +                K  +IF+  +PP++T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
             FR +FE YG +TD+ +  DQ +   RG GF+++ + D+V++++ +T H+L G  V V 
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 165 RATPKE 170
           RA PK+
Sbjct: 184 RALPKD 189



 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++F+  I     E   R HF  YG+++   + +D+ +   RG GF+ +++   ++ +++E
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++   V V RA  +E+                            +S  T        
Sbjct: 67  KHSIDTREVDVKRAMSREEQ--------------------------QVSGRT-------- 92

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
               N  +    G  A    KKIFVG LP   T E+ RQYF  +G + DV I  D   + 
Sbjct: 93  ---GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNR 149

Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD 311
            RGFGFV+F +ED V   + +  H++ G QV +  A P D
Sbjct: 150 PRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG +  E   + LR++F  +G +    + RD      RGFGFV F++  V DRV + 
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 294 PHEICGHQVAIDSATPLDD---AGPSGNFMLNSMDSFGG 329
            H I   +V +  A   ++   +G +GN  LN+  S GG
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGN--LNTSRSSGG 103


>AT5G47620.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:19302548-19304278 REVERSE LENGTH=431
          Length = 431

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 15/184 (8%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           ME  KL + GI WE   D L++Y   FGE+ + ++MK+RATGR+RGFG+V F   + A+ 
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEAT 107
           V+ ++H +  +++E K A P+++      K N             +IF+  +  SVTEA 
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121

Query: 108 FRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRA 166
           F+ +F ++G ITD+ +  D R++  RG GFI+Y + ++V+ ++++T HEL G  V V  A
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181

Query: 167 TPKE 170
            PK+
Sbjct: 182 VPKD 185



 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 47/239 (19%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I    +E   R +F  +G++ +  + KD+ +   RG GF+ +A+ +  E ++  
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++G  V   +A P++D                        +N   S+          
Sbjct: 67  KHIIDGKIVEAKKAVPRDDHV---------------------VFNKSNSSL--------- 96

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
                      +G P     KKIFVG L    T  + ++YF +FG I DV +  D +   
Sbjct: 97  -----------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR 145

Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
            RGFGF+++  +   D+V ++  HE+ G  V +  A P D A    N M N M  +SFG
Sbjct: 146 PRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 201


>AT5G47620.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:19302548-19304278 REVERSE LENGTH=431
          Length = 431

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 15/184 (8%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           ME  KL + GI WE   D L++Y   FGE+ + ++MK+RATGR+RGFG+V F   + A+ 
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VLSIEHNLGNRMLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEAT 107
           V+ ++H +  +++E K A P+++      K N             +IF+  +  SVTEA 
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121

Query: 108 FRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRA 166
           F+ +F ++G ITD+ +  D R++  RG GFI+Y + ++V+ ++++T HEL G  V V  A
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181

Query: 167 TPKE 170
            PK+
Sbjct: 182 VPKD 185



 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 47/239 (19%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I    +E   R +F  +G++ +  + KD+ +   RG GF+ +A+ +  E ++  
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++G  V   +A P++D                        +N   S+          
Sbjct: 67  KHIIDGKIVEAKKAVPRDDHV---------------------VFNKSNSSL--------- 96

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
                      +G P     KKIFVG L    T  + ++YF +FG I DV +  D +   
Sbjct: 97  -----------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR 145

Query: 273 HRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
            RGFGF+++  +   D+V ++  HE+ G  V +  A P D A    N M N M  +SFG
Sbjct: 146 PRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 201


>AT2G33410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:14156085-14157435 FORWARD LENGTH=404
          Length = 404

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 17/186 (9%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +Q KL + GI W+ D + L+EY S FGE+    VM+E+ATGR RGFG+V F+       V
Sbjct: 4   DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPVK----------------KVNRIFIARIPPSVTE 105
           L  +H++ NR ++VK A  +EE     +                +  +IF+  +PP++T 
Sbjct: 64  LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123

Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
             FR++FE YG ++D  +  DQ ++  RG GF+++ + DSV+ ++ +T H+L G  V V 
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183

Query: 165 RATPKE 170
           RA PK+
Sbjct: 184 RALPKD 189



 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 38/220 (17%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I     E   R +F  +G++  + + +++ +   RG GF+ +++   ++ ++++
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++   V V RA  +E+                             S   R     A 
Sbjct: 67  KHHIDNRDVDVKRAMSREEQ----------------------------SPAGRSGTFNAS 98

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
             +D+  +V           KKIFVG LP   T+++ R YF  +G + D  I  D     
Sbjct: 99  RNFDSGANVRT---------KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQR 149

Query: 273 HRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLD 311
            RGFGFV+F +ED V   + +  H++ G QV +  A P D
Sbjct: 150 PRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+F+G +  +     LR+YF  FG +L V + R+      RGFGFV F++  V DRV + 
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 294 PHEICGHQVAIDSATPLDDAGPSG 317
            H I    V +  A   ++  P+G
Sbjct: 67  KHHIDNRDVDVKRAMSREEQSPAG 90


>AT4G26650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:13445265-13447592 FORWARD LENGTH=452
          Length = 452

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 28/198 (14%)

Query: 1   MEQR--------KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTF 52
           MEQ+        KL + GI W+ D + L+EY  K+G+L + ++M++R TGR+RGFG++ F
Sbjct: 1   MEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 60

Query: 53  TSVDDAKNVLSIEHNLGNRMLEVKVATPKEEMK------APV-------------KKVNR 93
                A+ V+  +H +  R +E K A P+++ +      +P+              +  +
Sbjct: 61  ADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKK 120

Query: 94  IFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET 153
           IF+  +P S+TEA F+++F+++G I D+ +  D  ++  RG GFIT+ + +SV+ ++ +T
Sbjct: 121 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 180

Query: 154 -HELEGSTVVVDRATPKE 170
            HEL G  V V RA PKE
Sbjct: 181 FHELNGKMVEVKRAVPKE 198



 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 35/229 (15%)

Query: 82  EEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYA 141
           E+       + ++FI  I     E   + +F KYGD+ +  + +D+ +   RG GFI +A
Sbjct: 2   EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 61

Query: 142 NADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYIS 201
           +    E ++ + H ++G TV   +A P++D                              
Sbjct: 62  DPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ----------------------------Q 93

Query: 202 ATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILD 261
              R+A+   P    +P S  G G  AR   KKIFVG LP   T  + + YF +FG I D
Sbjct: 94  VLKRHAS---PMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGTIAD 147

Query: 262 VYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
           V +  D      RGFGF+TF  +   D V  +  HE+ G  V +  A P
Sbjct: 148 VVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVP 196



 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 226 EPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDG 285
           E A ++GK +F+G +  +   E L++YFG++G +++  I RD      RGFGF+ FA+  
Sbjct: 6   ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 64

Query: 286 VADRVARRPHEICGHQVAIDSATPLDD 312
           VA+RV    H I G  V    A P DD
Sbjct: 65  VAERVIMDKHIIDGRTVEAKKAVPRDD 91


>AT4G26650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:13445552-13447592 FORWARD LENGTH=455
          Length = 455

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 111/186 (59%), Gaps = 20/186 (10%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + GI W+ D + L+EY  K+G+L + ++M++R TGR+RGFG++ F     A+ V+  
Sbjct: 16  KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75

Query: 65  EHNLGNRMLEVKVATPKEEMK------APV-------------KKVNRIFIARIPPSVTE 105
           +H +  R +E K A P+++ +      +P+              +  +IF+  +P S+TE
Sbjct: 76  KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135

Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVD 164
           A F+++F+++G I D+ +  D  ++  RG GFIT+ + +SV+ ++ +T HEL G  V V 
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195

Query: 165 RATPKE 170
           RA PKE
Sbjct: 196 RAVPKE 201



 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 35/232 (15%)

Query: 79  TPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFI 138
            P+E+       + ++FI  I     E   + +F KYGD+ +  + +D+ +   RG GFI
Sbjct: 2   NPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61

Query: 139 TYANADSVENLMKETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNA 198
            +A+    E ++ + H ++G TV   +A P++D                           
Sbjct: 62  VFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ-------------------------- 95

Query: 199 YISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGH 258
                 R+A+   P    +P S  G G  AR   KKIFVG LP   T  + + YF +FG 
Sbjct: 96  --QVLKRHAS---PMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGT 147

Query: 259 ILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
           I DV +  D      RGFGF+TF  +   D V  +  HE+ G  V +  A P
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVP 199



 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 226 EPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDG 285
           E A ++GK +F+G +  +   E L++YFG++G +++  I RD      RGFGF+ FA+  
Sbjct: 9   ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67

Query: 286 VADRVARRPHEICGHQVAIDSATPLDD 312
           VA+RV    H I G  V    A P DD
Sbjct: 68  VAERVIMDKHIIDGRTVEAKKAVPRDD 94



 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+P  +     K Y  +FG + D +VM +  T R RGFG++TF S +    VL 
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181

Query: 63  SIEHNLGNRMLEVKVATPKE 82
              H L  +M+EVK A PKE
Sbjct: 182 KTFHELNGKMVEVKRAVPKE 201


>AT5G55550.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502077-22503658 REVERSE LENGTH=448
          Length = 448

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F     ++ V+  
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 65  EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
           +H +  R +E K A P+++ +            +PV     +  +IF+  +P S+TE  F
Sbjct: 67  KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
           +++F+++G I D+ +  D  ++  RG GFIT+ + D+V+ ++ +T HEL G  V V RA 
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 168 PKE 170
           PKE
Sbjct: 187 PKE 189



 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)

Query: 91  VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
           + ++FI  I     E   R +F  YGD+ +  + +D+ +   RG GFI +A+    E ++
Sbjct: 5   LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64

Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
            + H ++G TV   +A P++D                                 R+A+  
Sbjct: 65  MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94

Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
            P    +P  V+G G       KKIFVG LP   T E+ + YF +FG I DV +  D   
Sbjct: 95  -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147

Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
              RGFGF+TF  D   DRV  +  HE+ G  V +  A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+P  +  +  K Y  +FG + D +VM +  T R RGFG++TF S D    VL 
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
              H L  +++EVK A PKE   +PV  +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+F+G +  +   E LR YF  +G +++  I RD      RGFGF+ FA+  V++RV   
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 294 PHEICGHQVAIDSATPLDD 312
            H I G  V    A P DD
Sbjct: 67  KHIIDGRTVEAKKAVPRDD 85


>AT5G55550.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502077-22503658 REVERSE LENGTH=448
          Length = 448

 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F     ++ V+  
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 65  EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
           +H +  R +E K A P+++ +            +PV     +  +IF+  +P S+TE  F
Sbjct: 67  KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
           +++F+++G I D+ +  D  ++  RG GFIT+ + D+V+ ++ +T HEL G  V V RA 
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 168 PKE 170
           PKE
Sbjct: 187 PKE 189



 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)

Query: 91  VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
           + ++FI  I     E   R +F  YGD+ +  + +D+ +   RG GFI +A+    E ++
Sbjct: 5   LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64

Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
            + H ++G TV   +A P++D                                 R+A+  
Sbjct: 65  MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94

Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
            P    +P  V+G G       KKIFVG LP   T E+ + YF +FG I DV +  D   
Sbjct: 95  -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147

Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
              RGFGF+TF  D   DRV  +  HE+ G  V +  A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+P  +  +  K Y  +FG + D +VM +  T R RGFG++TF S D    VL 
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
              H L  +++EVK A PKE   +PV  +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+F+G +  +   E LR YF  +G +++  I RD      RGFGF+ FA+  V++RV   
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 294 PHEICGHQVAIDSATPLDD 312
            H I G  V    A P DD
Sbjct: 67  KHIIDGRTVEAKKAVPRDD 85


>AT5G55550.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502135-22503658 REVERSE LENGTH=460
          Length = 460

 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F     ++ V+  
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 65  EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
           +H +  R +E K A P+++ +            +PV     +  +IF+  +P S+TE  F
Sbjct: 67  KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
           +++F+++G I D+ +  D  ++  RG GFIT+ + D+V+ ++ +T HEL G  V V RA 
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 168 PKE 170
           PKE
Sbjct: 187 PKE 189



 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)

Query: 91  VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
           + ++FI  I     E   R +F  YGD+ +  + +D+ +   RG GFI +A+    E ++
Sbjct: 5   LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64

Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
            + H ++G TV   +A P++D                                 R+A+  
Sbjct: 65  MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94

Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
            P    +P  V+G G       KKIFVG LP   T E+ + YF +FG I DV +  D   
Sbjct: 95  -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147

Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
              RGFGF+TF  D   DRV  +  HE+ G  V +  A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+P  +  +  K Y  +FG + D +VM +  T R RGFG++TF S D    VL 
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
              H L  +++EVK A PKE   +PV  +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+F+G +  +   E LR YF  +G +++  I RD      RGFGF+ FA+  V++RV   
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 294 PHEICGHQVAIDSATPLDD 312
            H I G  V    A P DD
Sbjct: 67  KHIIDGRTVEAKKAVPRDD 85


>AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:22502135-22503658 REVERSE LENGTH=460
          Length = 460

 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 111/183 (60%), Gaps = 17/183 (9%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + GI W+ D + L++Y S +G++ + ++M++RATGR+RGFG++ F     ++ V+  
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 65  EHNLGNRMLEVKVATPKEEMK------------APVK----KVNRIFIARIPPSVTEATF 108
           +H +  R +E K A P+++ +            +PV     +  +IF+  +P S+TE  F
Sbjct: 67  KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRAT 167
           +++F+++G I D+ +  D  ++  RG GFIT+ + D+V+ ++ +T HEL G  V V RA 
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186

Query: 168 PKE 170
           PKE
Sbjct: 187 PKE 189



 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 38/220 (17%)

Query: 91  VNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLM 150
           + ++FI  I     E   R +F  YGD+ +  + +D+ +   RG GFI +A+    E ++
Sbjct: 5   LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64

Query: 151 KETHELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALG 210
            + H ++G TV   +A P++D                                 R+A+  
Sbjct: 65  MDKHIIDGRTVEAKKAVPRDDQ----------------------------QVLKRHAS-- 94

Query: 211 APTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKR 270
            P    +P  V+G G       KKIFVG LP   T E+ + YF +FG I DV +  D   
Sbjct: 95  -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147

Query: 271 SGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATP 309
              RGFGF+TF  D   DRV  +  HE+ G  V +  A P
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187



 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+P  +  +  K Y  +FG + D +VM +  T R RGFG++TF S D    VL 
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKV 91
              H L  +++EVK A PKE   +PV  +
Sbjct: 170 KTFHELNGKLVEVKRAVPKE--ISPVSNI 196



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+F+G +  +   E LR YF  +G +++  I RD      RGFGF+ FA+  V++RV   
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

Query: 294 PHEICGHQVAIDSATPLDD 312
            H I G  V    A P DD
Sbjct: 67  KHIIDGRTVEAKKAVPRDD 85


>AT5G47620.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:19302548-19304278 REVERSE LENGTH=453
          Length = 453

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 111/206 (53%), Gaps = 37/206 (17%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           ME  KL + GI WE   D L++Y   FGE+ + ++MK+RATGR+RGFG+V F   + A+ 
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 61  VLSIEHNLGNRML----------------------EVKVATPKEEMKAPVKKVN------ 92
           V+ ++H +  ++L                      E K A P+++      K N      
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDD-HVVFNKSNSSLQGS 121

Query: 93  -------RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADS 145
                  +IF+  +  SVTEA F+ +F ++G ITD+ +  D R++  RG GFI+Y + ++
Sbjct: 122 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 181

Query: 146 VENLMKET-HELEGSTVVVDRATPKE 170
           V+ ++++T HEL G  V V  A PK+
Sbjct: 182 VDKVLQKTFHELNGKMVEVKLAVPKD 207



 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 31/242 (12%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++FI  I    +E   R +F  +G++ +  + KD+ +   RG GF+ +A+ +  E ++  
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 153 THELEGSTVV---VDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAAL 209
            H ++G  +V   V     + D  K I                   +N   S+       
Sbjct: 67  KHIIDGKILVDSIVYNQLCRSD--KCISLSEVVEAKKAVPRDDHVVFNKSNSSL------ 118

Query: 210 GAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAK 269
                         +G P     KKIFVG L    T  + ++YF +FG I DV +  D +
Sbjct: 119 --------------QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHR 164

Query: 270 RSGHRGFGFVTFAEDGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DS 326
               RGFGF+++  +   D+V ++  HE+ G  V +  A P D A    N M N M  +S
Sbjct: 165 TQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNS 221

Query: 327 FG 328
           FG
Sbjct: 222 FG 223


>AT1G17640.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:6067394-6069098 REVERSE LENGTH=369
          Length = 369

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V G+ WE   +    Y  KFGE+ D ++M +R TG  RGFG+VTF     A+ VL  
Sbjct: 67  KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVK---KVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
           +H + +R +++K   P+ +    +K   K  +IF+  +PP + E   +++F  YGDI + 
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186

Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKE--THELEGSTVVVDRATPK 169
            +  D  +   RG GF+T+   DSV+ L  +   HEL    V + RA PK
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236



 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 52/219 (23%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++F+  +    T  TF ++F K+G++ D  +  D+ +   RG GF+T+A++   E +++E
Sbjct: 67  KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126

Query: 153 THELEGSTVVVDRATPKEDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAP 212
            H ++   V + R  P+ D    I                       +S T         
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKA---------------------VSKT--------- 156

Query: 213 TLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSG 272
                               +KIFVG LP     ++L+ YF  +G I++  I  D     
Sbjct: 157 --------------------RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGR 196

Query: 273 HRGFGFVTFAEDGVADRVAR--RPHEICGHQVAIDSATP 309
            RGFGFVTF  +   DR+    + HE+   QV I  A P
Sbjct: 197 SRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP 235



 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+P  ++ D LK Y   +G++ +  +M +  TGRSRGFG+VTF + D    + S
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216

Query: 64  --IEHNLGNRMLEVKVATPK 81
               H LG++ +E+K A PK
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236



 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG +  E T E    YFG+FG ++D  I  D      RGFGFVTFA+  VA++V   
Sbjct: 67  KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126

Query: 294 PHEICGHQVAIDSATPLDD 312
            H I   +V +    P  D
Sbjct: 127 DHVIDDRKVDLKRTLPRGD 145


>AT5G40490.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:16225483-16227423 FORWARD LENGTH=423
          Length = 423

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           K+ V G+  E  +    ++  K+GE+ D ++MK+R TG+ RGFG+VT+        V+  
Sbjct: 43  KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
            H +  + +E+K   P+  M +   K  +IF+  IP SV +  F+  F ++G++ +  + 
Sbjct: 103 NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162

Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKE 170
           +D  +   RG GF+TY + D V++L+ + +  EL G+ V + +A PK+
Sbjct: 163 RDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210



 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 63/228 (27%)

Query: 88  VKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVE 147
           V    +IF+  +    T A F  HF KYG+ITD  + KD+++   RG GF+TYA++  V+
Sbjct: 38  VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVD 97

Query: 148 NLMKETHELEGSTVVVDRATPK----EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISAT 203
            ++++ H + G  V + R  P+     +DFK                            T
Sbjct: 98  KVIQDNHIIIGKQVEIKRTIPRGSMSSNDFK----------------------------T 129

Query: 204 TRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVY 263
            +    G P+  D+                             ++ +++F +FG + +  
Sbjct: 130 KKIFVGGIPSSVDD-----------------------------DEFKEFFMQFGELKEHQ 160

Query: 264 IPRDAKRSGHRGFGFVTFAEDGVADRVARRPH--EICGHQVAIDSATP 309
           I RD      RGFGFVT+  + + D +  + +  E+ G QV I  A P
Sbjct: 161 IMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208



 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           +K+ V GIP  VD D  KE+  +FGEL++  +M++ +TGRSRGFG+VT+ S D   ++L+
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189

Query: 64  IEH--NLGNRMLEVKVATPKE 82
             +   L    +E+K A PK+
Sbjct: 190 KGNRIELSGTQVEIKKAEPKK 210


>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
           chr1:21727374-21728539 FORWARD LENGTH=360
          Length = 360

 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 27/193 (13%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V GI  E   + LK+Y S++G + + +V KE+ TG+ RGFG+V F +  D    L  
Sbjct: 7   KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66

Query: 65  EHNLGNRMLEVKVATPKEE----------MKAPVKKVN----------------RIFIAR 98
            H +  + ++V+ A  K E          ++  V+++N                +IF+  
Sbjct: 67  THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126

Query: 99  IPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELE 157
           +  + TE  F+S+FE++G  TD+ +  D  +   RG GF+TY + DSVE +M+   HEL 
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELS 186

Query: 158 GSTVVVDRATPKE 170
              V V RA PKE
Sbjct: 187 DKRVEVKRAIPKE 199



 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 31/255 (12%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           ++F+  I    +E   + +F +YG + +  + K++ +   RG GF+ +AN   V   +++
Sbjct: 7   KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66

Query: 153 THELEGSTVVVDRATPKEDDFK-PIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGA 211
           TH + G  V V +A  K + ++ P                       ++    +    G 
Sbjct: 67  THFILGKPVDVRKAIRKHELYQQPFSMQ-------------------FLERKVQQMNGGL 107

Query: 212 PTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRS 271
             +  N       G  +R   KKIFVG L    T E+ + YF RFG   DV +  D   +
Sbjct: 108 REMSSN-------GVTSRT--KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTN 158

Query: 272 GHRGFGFVTF-AEDGVADRVARRPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGF 330
             RGFGFVT+ +ED V   +    HE+   +V +  A P +    +    +N   S+  F
Sbjct: 159 RPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSF 218

Query: 331 -GGPVRPYGRMYGSL 344
              P  P    YG +
Sbjct: 219 QATPYVPEQNGYGMV 233



 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +K+ V G+      +  K Y  +FG   D +VM +  T R RGFG+VT+ S D  + V+ 
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179

Query: 63  SIEHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVT 104
           S  H L ++ +EVK A PKE +++     N      IPPS +
Sbjct: 180 SNFHELSDKRVEVKRAIPKEGIQS-----NNGNAVNIPPSYS 216


>AT3G13224.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4254848-4256621 FORWARD LENGTH=358
          Length = 358

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           K+ + G+  +       ++  K+GE+ D ++M++R TG+ RGFG++TF        V+  
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVK--KVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
            H +  + +E+K   PK       K  K  +IF+  IP +VTE   +  F KYG++ +  
Sbjct: 80  THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139

Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKE 170
           + +D  +   RG GF+ + + + V+ L+ + +  ++  + V + +A PK+
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKK 189



 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 43/81 (53%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           KIF+G L ++ T     ++FG++G I D  I RD      RGFGF+TFA+  V D+V   
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 294 PHEICGHQVAIDSATPLDDAG 314
            H I G QV I    P    G
Sbjct: 80  THVINGKQVEIKRTIPKGAGG 100



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           ++ +K+ V GIP  V  D LK++ +K+G + +  V+++  T RSRGFG+V F S +    
Sbjct: 106 IKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165

Query: 61  VLSIEH--NLGNRMLEVKVATPKEEMK 85
           +LS  +  ++ +  +E+K A PK+ + 
Sbjct: 166 LLSKGNMIDMADTQVEIKKAEPKKSLN 192



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 233 KKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR 292
           KKIFVG +P   T ++L+ +F ++G++++  + RD + +  RGFGFV F  + V D +  
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168

Query: 293 RPH--EICGHQVAIDSATP 309
           + +  ++   QV I  A P
Sbjct: 169 KGNMIDMADTQVEIKKAEP 187


>AT3G13224.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4254848-4256014 FORWARD LENGTH=231
          Length = 231

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           K+ + G+  +       ++  K+GE+ D ++M++R TG+ RGFG++TF        V+  
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVK--KVNRIFIARIPPSVTEATFRSHFEKYGDITDLY 122
            H +  + +E+K   PK       K  K  +IF+  IP +VTE   +  F KYG++ +  
Sbjct: 80  THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQ 139

Query: 123 MPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
           + +D  +   RG GF+ + + + V+ L+ + + ++
Sbjct: 140 VIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMID 174



 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           KIF+G L ++ T     ++FG++G I D  I RD      RGFGF+TFA+  V D+V   
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 294 PHEICGHQVAIDSATPLDDAGPSGN 318
            H I G QV I    P    G  GN
Sbjct: 80  THVINGKQVEIKRTIP---KGAGGN 101



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           +IFI  +    T   F  HF KYG+ITD  + +D+ +   RG GFIT+A+   V+ ++++
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 153 THELEGSTVVVDRATPK 169
           TH + G  V + R  PK
Sbjct: 80  THVINGKQVEIKRTIPK 96



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 233 KKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR 292
           KKIFVG +P   T ++L+ +F ++G++++  + RD + +  RGFGFV F  + V D +  
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168

Query: 293 RPHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSF 327
           + + I       D+   L   G    FM+  +  F
Sbjct: 169 KGNMID----MADTQVSLYKWGLEFWFMMTYLSWF 199



 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           ++ +K+ V GIP  V  D LK++ +K+G + +  V+++  T RSRGFG+V F S +    
Sbjct: 106 IKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165

Query: 61  VLS 63
           +LS
Sbjct: 166 LLS 168


>AT4G00830.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 84/359 (23%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           ++ + G+P +V  + L++   + GE+ +  +MK+R +G S+G+ +V F + D A+  +  
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
            H+      E K ++        +   NR+FI  IP + TE  FR   E  G  + ++ +
Sbjct: 177 LHS-----KEFKASS---TANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228

Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
            KD  + T +RG  F+ Y N   AD S + ++    +LEG+   V  A PK         
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279

Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
                                  ++  ++A  A                     K ++V 
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297

Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
           ++P+  +TE L++ F R G +  +  P    + G R FGFV +AE   A +  +    +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355

Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
           + G  + +  A P  +           A P+    ++   +FGGF     PYG M   L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410


>AT4G00830.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 84/359 (23%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           ++ + G+P +V  + L++   + GE+ +  +MK+R +G S+G+ +V F + D A+  +  
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
            H+   +   ++ +  + +        NR+FI  IP + TE  FR   E  G  + ++ +
Sbjct: 177 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228

Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
            KD  + T +RG  F+ Y N   AD S + ++    +LEG+   V  A PK         
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279

Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
                                  ++  ++A  A                     K ++V 
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297

Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
           ++P+  +TE L++ F R G +  +  P    + G R FGFV +AE   A +  +    +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355

Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
           + G  + +  A P  +           A P+    ++   +FGGF     PYG M   L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTF--TSVDDA 58
           + +L +  IP     D  ++ +   G  +E+  ++K+   T R+RGF +V +   +  D 
Sbjct: 195 KNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADY 254

Query: 59  KNVLSIEHN--LGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
                I+ N  L      V  A PK   E  A   +V  +++  IP + +    +  F++
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314

Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
           +G++T +  P  +  K  R  GF+ YA   S    +K+T  +E+ G  + V  A P+
Sbjct: 315 HGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369


>AT4G00830.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 84/359 (23%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           ++ + G+P +V  + L++   + GE+ +  +MK+R +G S+G+ +V F + D A+  +  
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYM 123
            H+   +   ++ +  + +        NR+FI  IP + TE  FR   E  G  + ++ +
Sbjct: 177 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIEL 228

Query: 124 PKDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXX 178
            KD  + T +RG  F+ Y N   AD S + ++    +LEG+   V  A PK         
Sbjct: 229 IKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK--------- 279

Query: 179 XXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVG 238
                                  ++  ++A  A                     K ++V 
Sbjct: 280 -----------------------SSPEHSAAAAQV-------------------KALYVK 297

Query: 239 HLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHE 296
           ++P+  +TE L++ F R G +  +  P    + G R FGFV +AE   A +  +    +E
Sbjct: 298 NIPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYE 355

Query: 297 ICGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
           + G  + +  A P  +           A P+    ++   +FGGF     PYG M   L
Sbjct: 356 VNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 410



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 12/177 (6%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGE-LEDCIVMKE-RATGRSRGFGYVTF--TSVDDA 58
           + +L +  IP     D  ++ +   G  +E+  ++K+   T R+RGF +V +   +  D 
Sbjct: 195 KNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADY 254

Query: 59  KNVLSIEHN--LGNRMLEVKVATPKE--EMKAPVKKVNRIFIARIPPSVTEATFRSHFEK 114
                I+ N  L      V  A PK   E  A   +V  +++  IP + +    +  F++
Sbjct: 255 SRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQR 314

Query: 115 YGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPK 169
           +G++T +  P  +  K  R  GF+ YA   S    +K+T  +E+ G  + V  A P+
Sbjct: 315 HGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369


>AT4G00830.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352842-354965 FORWARD LENGTH=467
          Length = 467

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 90/358 (25%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           ++ + G+P +V  + L++   + GE+ +  +MK+R +G S+G+ +V F + D A+  +  
Sbjct: 97  EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
            H+   +   ++ +  + +        NR+FI  IP + TE  FR   E  G       P
Sbjct: 157 LHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVG-------P 201

Query: 125 KDQRSKT-HRGIGFITYAN---AD-SVENLMKETHELEGSTVVVDRATPKEDDFKPIXXX 179
            D  + T +RG  F+ Y N   AD S + ++    +LEG+   V  A PK          
Sbjct: 202 GDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK---------- 251

Query: 180 XXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGH 239
                                 ++  ++A  A                     K ++V +
Sbjct: 252 ----------------------SSPEHSAAAAQV-------------------KALYVKN 270

Query: 240 LPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVAR--RPHEI 297
           +P+  +TE L++ F R G +  +  P    + G R FGFV +AE   A +  +    +E+
Sbjct: 271 IPENTSTEQLKELFQRHGEVTKIVTP--PGKGGKRDFGFVHYAERSSALKAVKDTERYEV 328

Query: 298 CGHQVAIDSATPLDD-----------AGPSGNFMLNSMDSFGGFGGPVRPYGRMYGSL 344
            G  + +  A P  +           A P+    ++   +FGGF     PYG M   L
Sbjct: 329 NGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHP--TFGGFA--AAPYGAMGAGL 382


>AT2G41060.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17127138-17128493 FORWARD LENGTH=451
          Length = 451

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 14/181 (7%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+   D L +   ++GE+EDC  + ++ +G+S+G+G++ F S   A+N L 
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187

Query: 64  I-EHNLGNRMLEVKVAT----PKEEMKAPVKKVN------RIFIARIPPSVTEATFRSHF 112
             +  +G RM   ++A+        + AP +  N      +I+++ +   +        F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247

Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGSTVVVDRAT--PK 169
            ++G+I +  +  D+ +   +G     Y + +S +  ++E H+  EG  +   +A   PK
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK 307

Query: 170 E 170
           +
Sbjct: 308 Q 308



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           QRK+ V  +  ++D   L E+ S+FGE+E+  +  ++ATGR +GF    + S++ AK  L
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285

Query: 63  SIEH 66
              H
Sbjct: 286 EEPH 289


>AT2G41060.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:17127138-17128493 FORWARD LENGTH=451
          Length = 451

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 90/181 (49%), Gaps = 14/181 (7%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+   D L +   ++GE+EDC  + ++ +G+S+G+G++ F S   A+N L 
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187

Query: 64  I-EHNLGNRMLEVKVAT----PKEEMKAPVKKVN------RIFIARIPPSVTEATFRSHF 112
             +  +G RM   ++A+        + AP +  N      +I+++ +   +        F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247

Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGSTVVVDRAT--PK 169
            ++G+I +  +  D+ +   +G     Y + +S +  ++E H+  EG  +   +A   PK
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPK 307

Query: 170 E 170
           +
Sbjct: 308 Q 308



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           QRK+ V  +  ++D   L E+ S+FGE+E+  +  ++ATGR +GF    + S++ AK  L
Sbjct: 226 QRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285

Query: 63  SIEH 66
              H
Sbjct: 286 EEPH 289


>AT3G15010.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:5052844-5054058 FORWARD LENGTH=404
          Length = 404

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           + QRKL + G+  +  T+GL+   S +G+LE+ IV+ ++ TG+S+G+G+VTF  VD A  
Sbjct: 72  ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131

Query: 61  VLS-IEHNLGNRMLEVKVATPKEE---MKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
            L      +  R+   ++A    +    +     + +I++A +P  +      +HF  YG
Sbjct: 132 ALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191

Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           D+ +  +  D+ +   RG     Y  A+  +  + +
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227


>AT3G15010.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:5052844-5054058 FORWARD LENGTH=404
          Length = 404

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           + QRKL + G+  +  T+GL+   S +G+LE+ IV+ ++ TG+S+G+G+VTF  VD A  
Sbjct: 72  ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL 131

Query: 61  VLS-IEHNLGNRMLEVKVATPKEE---MKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
            L      +  R+   ++A    +    +     + +I++A +P  +      +HF  YG
Sbjct: 132 ALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYG 191

Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           D+ +  +  D+ +   RG     Y  A+  +  + +
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227


>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
           binding protein | chr4:12766223-12767952 REVERSE
           LENGTH=329
          Length = 329

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E+ KL V  + ++V++  L     + G +E   V+  R T +SRGFG+VT +SVD+A+  
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207

Query: 62  LSI--EHNLGNRMLEVKVATPKEEM--KAP--VKKVNRIFIARIPPSVTEATFRSHFEKY 115
           +     ++L  R+L V  A P+     +AP   +   R+++  +P  V        F ++
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEH 267

Query: 116 GDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRATPK 169
           G + +  +  D+ +   RG GF+T ++ D +   +   +   LEG  + V+ A  +
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323


>AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=421
          Length = 421

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 55/315 (17%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E R L +  + + VD + L    S+ GEL    V++ + TG+  G+G++ F S   A+  
Sbjct: 22  EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81

Query: 62  LSIEHNLGNRM------LEVKVATPKEEMKAPVKKVNRIFIARIPPSVT----EATFRSH 111
           L   +  G +M        +  A+     K      + IF+  + P VT    + TFR H
Sbjct: 82  LQTYN--GTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 139

Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATPK 169
           +        +  P   RSK   G GF+ +A        M E + L  ST  + +  ATPK
Sbjct: 140 YSSVRGAKVVTDPSTGRSK---GYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196

Query: 170 EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPT-LYDNPGSVYGRGEPA 228
           ++                           Y++  T  +A+ AP   Y  P        P 
Sbjct: 197 KN---------------------VGVQQQYVTKVTVPSAVAAPVQAYVAP--------PE 227

Query: 229 REV-GKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
            +V    I V +L Q  T E+L++ F + G ++ V IP        +G+G+V F     A
Sbjct: 228 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSA 281

Query: 288 DRVARRPH-EICGHQ 301
           +   +R   ++ G Q
Sbjct: 282 EEAVQRMQGQVIGQQ 296


>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
           chr3:21050708-21052144 REVERSE LENGTH=478
          Length = 478

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+  T+ L E   ++GE+EDC  + ++ +G+S+G+G++ + S   A+N L 
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query: 64  I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
             +  +G+RM   ++A+     K PV                         +I+++ +  
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254

Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
            +        F K+G+I +  +  D+ +   +G     Y +++S +  ++E H+  EG  
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314

Query: 161 VVVDRA 166
           +   +A
Sbjct: 315 LHCQKA 320


>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
           chr3:21050708-21052144 REVERSE LENGTH=478
          Length = 478

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+  T+ L E   ++GE+EDC  + ++ +G+S+G+G++ + S   A+N L 
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query: 64  I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
             +  +G+RM   ++A+     K PV                         +I+++ +  
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254

Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
            +        F K+G+I +  +  D+ +   +G     Y +++S +  ++E H+  EG  
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314

Query: 161 VVVDRA 166
           +   +A
Sbjct: 315 LHCQKA 320


>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
           chr3:21050708-21052144 REVERSE LENGTH=478
          Length = 478

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+  T+ L E   ++GE+EDC  + ++ +G+S+G+G++ + S   A+N L 
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query: 64  I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
             +  +G+RM   ++A+     K PV                         +I+++ +  
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254

Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
            +        F K+G+I +  +  D+ +   +G     Y +++S +  ++E H+  EG  
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314

Query: 161 VVVDRA 166
           +   +A
Sbjct: 315 LHCQKA 320


>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
           chr3:21050708-21052144 REVERSE LENGTH=478
          Length = 478

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+  T+ L E   ++GE+EDC  + ++ +G+S+G+G++ + S   A+N L 
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query: 64  I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
             +  +G+RM   ++A+     K PV                         +I+++ +  
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254

Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
            +        F K+G+I +  +  D+ +   +G     Y +++S +  ++E H+  EG  
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314

Query: 161 VVVDRA 166
           +   +A
Sbjct: 315 LHCQKA 320


>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
           chr3:21050708-21052144 REVERSE LENGTH=478
          Length = 478

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           RK+ V G+ W+  T+ L E   ++GE+EDC  + ++ +G+S+G+G++ + S   A+N L 
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query: 64  I-EHNLGNRMLEVKVATPKEEMKAPV---------------------KKVNRIFIARIPP 101
             +  +G+RM   ++A+     K PV                         +I+++ +  
Sbjct: 200 QPQKKIGSRMTACQLAS-----KGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGA 254

Query: 102 SVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE-LEGST 160
            +        F K+G+I +  +  D+ +   +G     Y +++S +  ++E H+  EG  
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314

Query: 161 VVVDRA 166
           +   +A
Sbjct: 315 LHCQKA 320


>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
           protein-defense related 1 | chr4:1376612-1379275 REVERSE
           LENGTH=441
          Length = 441

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  IP  +    L     +F  +++  ++K++ T  SRG  ++   S ++A  +++ 
Sbjct: 19  KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78

Query: 65  EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
            HN       N +L+VK A  + E     +  +++F+  +P +V+EA  +S F KYG I 
Sbjct: 79  CHNKKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSLFSKYGTIK 133

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
           DL + +  + +T +G  F+ Y   +   + M+     H++EGSTV
Sbjct: 134 DLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177


>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
           protein-defense related 1 | chr4:1376710-1379275 REVERSE
           LENGTH=439
          Length = 439

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  IP  +    L     +F  +++  ++K++ T  SRG  ++   S ++A  +++ 
Sbjct: 19  KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78

Query: 65  EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
            HN       N +L+VK A  + E     +  +++F+  +P +V+EA  +S F KYG I 
Sbjct: 79  CHNKKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSLFSKYGTIK 133

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
           DL + +  + +T +G  F+ Y   +   + M+     H++EGSTV
Sbjct: 134 DLQILRGAQ-QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTV 177


>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
           | chr1:27915346-27916857 FORWARD LENGTH=289
          Length = 289

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           M   K+ V GI +  D  GL+E  SK+GE+ D  ++ +R TGRSRGF +VTFTS ++A N
Sbjct: 31  MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90

Query: 61  VLSIE-HNLGNRMLEVKVAT 79
            + ++  +L  R + V  AT
Sbjct: 91  AMQLDGQDLHGRRIRVNYAT 110


>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
           | chr5:20452677-20453965 REVERSE LENGTH=289
          Length = 289

 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E+ KL V  +P++VD+  L     + G +E   V+  R T +SRGFG+VT ++V++A+  
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170

Query: 62  L----SIEHNLGNRMLEVKVATPK----EEMKAPVKKVNRIFIARIPPSVTEATFRSHFE 113
           +    S E N   R L V  A P+    E          RI++  +P  V        F 
Sbjct: 171 VEKFNSFEVN--GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228

Query: 114 KYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELEGSTVVVDRA 166
           ++G + D  +  D+ +   RG GF+  +N + V   +   +   LEG  + V+ A
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283


>AT5G47620.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:19302548-19304106 REVERSE LENGTH=371
          Length = 371

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 15/113 (13%)

Query: 72  MLEVKVATPKEEMKAPVKKVN-------------RIFIARIPPSVTEATFRSHFEKYGDI 118
           M+E K A P+++      K N             +IF+  +  SVTEA F+ +F ++G I
Sbjct: 14  MVEAKKAVPRDD-HVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 72

Query: 119 TDLYMPKDQRSKTHRGIGFITYANADSVENLMKET-HELEGSTVVVDRATPKE 170
           TD+ +  D R++  RG GFI+Y + ++V+ ++++T HEL G  V V  A PK+
Sbjct: 73  TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKD 125



 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 224 RGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAE 283
           +G P     KKIFVG L    T  + ++YF +FG I DV +  D +    RGFGF+++  
Sbjct: 37  QGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 96

Query: 284 DGVADRVARRP-HEICGHQVAIDSATPLDDAGPSGNFMLNSM--DSFG 328
           +   D+V ++  HE+ G  V +  A P D A    N M N M  +SFG
Sbjct: 97  EEAVDKVLQKTFHELNGKMVEVKLAVPKDMA---LNTMRNQMNVNSFG 141



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
             +K+ V G+   V     K+Y ++FG + D +VM +  T R RGFG++++ S +    V
Sbjct: 44  NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 103

Query: 62  LSIE-HNLGNRMLEVKVATPKEEMKAPVK---KVNRIFIARIPPSVTEAT 107
           L    H L  +M+EVK+A PK+     ++    VN    +RI   + E T
Sbjct: 104 LQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYT 153


>AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=425
          Length = 425

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 122/313 (38%), Gaps = 47/313 (15%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E R L +  + + VD + L    S+ GEL    V++ + TG+  G+G++ F S   A+  
Sbjct: 22  EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81

Query: 62  LSIEHNLGNRM------LEVKVATPKEEMKAPVKKVNRIFIARIPPSVT----EATFRSH 111
           L   +  G +M        +  A+     K      + IF+  + P VT    + TFR H
Sbjct: 82  LQTYN--GTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVH 139

Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGST--VVVDRATPK 169
           +        +  P   RSK   G GF+ +A        M E + L  ST  + +  ATPK
Sbjct: 140 YSSVRGAKVVTDPSTGRSK---GYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196

Query: 170 EDDFKPIXXXXXXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAR 229
           ++                           Y+  T     +  P+    P   Y     + 
Sbjct: 197 KN---------------------VGVQQQYV--TKAVYPVTVPSAVAAPVQAYVAPPESD 233

Query: 230 EVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADR 289
                I V +L Q  T E+L++ F + G ++ V IP        +G+G+V F     A+ 
Sbjct: 234 VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSAEE 287

Query: 290 VARRPH-EICGHQ 301
             +R   ++ G Q
Sbjct: 288 AVQRMQGQVIGQQ 300


>AT1G60000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:22093678-22094540 REVERSE LENGTH=258
          Length = 258

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 8/173 (4%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV--- 61
           KL    +P+ VD+  L + +  F   E   V+  R TG+SRGF +VT ++V+D   +   
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPV--KKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
           L     LG R L+V  A   +  K P+  +  +++F+  +  +VT  +    F + GD+ 
Sbjct: 146 LDGTEYLG-RALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKE 170
              +  D  +   RG GF+ Y++   +E  ++     ELEG  + V+ A  K+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257


>AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:15634980-15636331 REVERSE LENGTH=289
          Length = 289

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  +P+ VD+  L +     G +E   V+ ++ TGRSRGFG+VT +SV + +     
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 65  --EHNLGNRMLEVKVATPKEEMKAPVKK-----------------------VNRIFIARI 99
              + L  R L V    P  + +    +                        NR+++  +
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211

Query: 100 PPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK--ETHELE 157
              V +    S F + G + +  +  D+ S   +G GF+TY ++  V+N +K  +  +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271

Query: 158 GSTVVVDRATPK 169
           G  + V  A  +
Sbjct: 272 GRQIRVSEAEAR 283


>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
           | chr5:24560870-24562152 FORWARD LENGTH=309
          Length = 309

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 1   MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKN 60
           M   KL + G+ + +D D L+E  +K+GE+ D  V+ +R TGRSRGFG+VTFTS + A +
Sbjct: 37  MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96

Query: 61  VLSI--EHNLGNRMLEVKVATPK 81
            +      +L  R+++V  A  +
Sbjct: 97  AIQALDGRDLHGRVVKVNYANDR 119


>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
           protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
          Length = 136

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V G+ W  D   LK+  + FGE+ +  V+ +R TGRSRGFG+V+F+  D A N +  
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 65  E--HNLGNRMLEVKVATPKEEMKAP 87
                L  R + V +AT  E   AP
Sbjct: 96  MDGKELNGRQIRVNLAT--ERSSAP 118


>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
           protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
          Length = 136

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V G+ W  D   LK+  + FGE+ +  V+ +R TGRSRGFG+V+F+  D A N +  
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 65  E--HNLGNRMLEVKVATPKEEMKAP 87
                L  R + V +AT  E   AP
Sbjct: 96  MDGKELNGRQIRVNLAT--ERSSAP 118


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 8   VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
           V  +P E+  D LK+   K+G++   +VMK++ +G SR FG+V F S + A   +++E  
Sbjct: 243 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAA--AVAVEKM 299

Query: 67  ---NLGNRMLEVKVATPK----EEM--KAPVKKVNR--------IFIARIPPSVTEATFR 109
              +LG  +L V  A  K    EE+  K   ++++R        +++  +  SV +   +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359

Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH 154
             F +YG++T   +  + +  + RG GF+ Y+N +     MKE +
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNPEEALLAMKEMN 403



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 56/279 (20%)

Query: 15  VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLE 74
           +D   L E  S FG +  C V  +   GRS+G+G+V F   + A+  +     L   +L 
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID---KLNGMLLN 212

Query: 75  ---------VKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPK 125
                    V+           V     +++  +P  +T+   +  F KYGDI+   + K
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272

Query: 126 DQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPIXXXXXXX 183
           DQ S   R  GF+ + + ++    +++ +   L    + V RA  K D  + +       
Sbjct: 273 DQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQE 331

Query: 184 XXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQE 243
                               +R+  L                      G  +++ +L   
Sbjct: 332 R------------------ISRFEKLQ---------------------GSNLYLKNLDDS 352

Query: 244 ATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFA 282
              E L++ F  +G++    +  +++    RGFGFV ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYS 390


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 8   VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
           V  +P E+  D LK+   K+G++   +VMK++ +G SR FG+V F S + A   +++E  
Sbjct: 243 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAA--AVAVEKM 299

Query: 67  ---NLGNRMLEVKVATPK----EEM--KAPVKKVNR--------IFIARIPPSVTEATFR 109
              +LG  +L V  A  K    EE+  K   ++++R        +++  +  SV +   +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359

Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH 154
             F +YG++T   +  + +  + RG GF+ Y+N +     MKE +
Sbjct: 360 EMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNPEEALLAMKEMN 403



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 56/279 (20%)

Query: 15  VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLE 74
           +D   L E  S FG +  C V  +   GRS+G+G+V F   + A+  +     L   +L 
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID---KLNGMLLN 212

Query: 75  ---------VKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPK 125
                    V+           V     +++  +P  +T+   +  F KYGDI+   + K
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272

Query: 126 DQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPIXXXXXXX 183
           DQ S   R  GF+ + + ++    +++ +   L    + V RA  K D  + +       
Sbjct: 273 DQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQE 331

Query: 184 XXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQE 243
                               +R+  L                      G  +++ +L   
Sbjct: 332 R------------------ISRFEKLQ---------------------GSNLYLKNLDDS 352

Query: 244 ATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFA 282
              E L++ F  +G++    +  +++    RGFGFV ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYS 390


>AT1G60650.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein with retrovirus zinc finger-like domain |
          chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
          ++ V G+ W+V    L+    ++G++ +C +M  R TGR RGFG++TFT    A + +  
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72

Query: 65 EH--NLGNRMLEVKVATPK 81
           H   LGN+++ V  A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91



 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 92  NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK 151
           +RIF+  +   VTE    S F++YG IT+  +   + +   RG GFIT+ +    ++ +K
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 152 ETH--ELEGSTVVVDRATPK 169
             H  EL    + V++A PK
Sbjct: 72  HMHGRELGNKVISVNKAEPK 91


>AT1G60650.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein with retrovirus zinc finger-like domain |
          chr1:22340089-22342148 FORWARD LENGTH=292
          Length = 292

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
          ++ V G+ W+V    L+    ++G++ +C +M  R TGR RGFG++TFT    A + +  
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72

Query: 65 EH--NLGNRMLEVKVATPK 81
           H   LGN+++ V  A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91



 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 92  NRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK 151
           +RIF+  +   VTE    S F++YG IT+  +   + +   RG GFIT+ +    ++ +K
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 152 ETH--ELEGSTVVVDRATPK 169
             H  EL    + V++A PK
Sbjct: 72  HMHGRELGNKVISVNKAEPK 91


>AT5G04280.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein with retrovirus zinc finger-like domain |
          chr5:1192461-1195413 FORWARD LENGTH=310
          Length = 310

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 2  EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
          E  ++ V G+  EV    L+   S+FG++ DC +M ER TGRSRGFG++TF         
Sbjct: 5  EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64

Query: 62 LSIEH--NLGNRMLEVKVATPK 81
          +   H  + G+R++ V  A PK
Sbjct: 65 IREMHGRDFGDRVISVNRAEPK 86



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 88  VKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVE 147
            K+ +RIF+  + P VT+      F ++GDI D  +  ++ +   RG GFIT+A+  +++
Sbjct: 3   AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62

Query: 148 NLMKETH--ELEGSTVVVDRATPK 169
             ++E H  +     + V+RA PK
Sbjct: 63  ESIREMHGRDFGDRVISVNRAEPK 86



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYI--PRDAKRSGHRGFGFVTFAEDG 285
           A + G +IFVG L  E T  DL + F RFG ILD  I   RD  RS  RGFGF+TFA+  
Sbjct: 2   AAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRS--RGFGFITFADRR 59

Query: 286 VADRVARRPH--EICGHQVAIDSATP 309
             D   R  H  +     ++++ A P
Sbjct: 60  AMDESIREMHGRDFGDRVISVNRAEP 85


>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
           chr3:5558676-5560993 REVERSE LENGTH=537
          Length = 537

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 19/179 (10%)

Query: 15  VDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS--IEHNLGNRM 72
           V  D L    S++G +   +VM++   GRSRGFG+V F + ++AK  +       LG++ 
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKK 271

Query: 73  LEVKVATPKEEMKAPVKKV-------------NRIFIARIPPSVTEATFRSHFEKYGDIT 119
           L V  A  K+E +  +K+              + +++  +  S+ E   R  F  YG I 
Sbjct: 272 LFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIV 331

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRATPKEDDFKPI 176
              +   +  ++ +G GF+ ++N +  +   +  +   ++G  +VV  A  KED  K +
Sbjct: 332 SAKVMCHENGRS-KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRL 389



 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 112/283 (39%), Gaps = 50/283 (17%)

Query: 6   LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
           L V  +   + +  L+     FG +  C V++E   G+S+GFG+V F +   A +  S  
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171

Query: 66  HN---LGNRMLEVKVATPKEEMK-APVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
           H     G ++   K     E    A  +    +++  +  +VT+    + F +YG ++ +
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231

Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKETHELE-GSTVVVDRATPKEDDFKPIXXXX 180
            + +D   ++ RG GF+ + N ++ +  M+    L+ GS  +      K+D+ + +    
Sbjct: 232 VVMRDGMGRS-RGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQK 290

Query: 181 XXXXXXXXXXXXXXAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHL 240
                           N       R++ L                          +V +L
Sbjct: 291 FSD-------------NFIAKPNMRWSNL--------------------------YVKNL 311

Query: 241 PQEATTEDLRQYFGRFGHILDVYI-PRDAKRSGHRGFGFVTFA 282
            +      LR+ FG +G I+   +   +  RS  +GFGFV F+
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCHENGRS--KGFGFVCFS 352


>AT1G22330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:7886693-7889241 FORWARD LENGTH=291
          Length = 291

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 40/59 (67%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
          K+ V G+ WE  TD ++ Y  +FGE+ + +++ ++ATG+S+G+G+VTF   D A   ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76



 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG L  E  T+++R+YF +FG IL+  I  D      +G+GFVTF +   A R    
Sbjct: 18  KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77

Query: 294 PHEI 297
           P+ +
Sbjct: 78  PNPV 81


>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
           chr1:8055599-8058799 FORWARD LENGTH=660
          Length = 660

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 8   VLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH- 66
           V  +P E+  D L++   KFG +   +VM+++ +G SR FG+V F   + A + +   + 
Sbjct: 233 VKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNG 291

Query: 67  -NLGNRMLEVKVATPKEEMKAPVK------KVNR--------IFIARIPPSVTEATFRSH 111
            +LG+ +L V  A  K E +  ++      ++NR        +++  +  SV +   +  
Sbjct: 292 ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEM 351

Query: 112 FEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTV 161
           F +YG++T   +  + +  + RG GF+ Y+N    E  ++   E+ G  +
Sbjct: 352 FSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNP---EEALRALSEMNGKMI 397



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
            + +  +   +D   L E  S FG +  C V  +  TGRS+G+G+V F   + A+  +  
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195

Query: 65  EHNL--GNRMLEVKVATPKEEM----KAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDI 118
            + +   ++ + V     ++E       P  +   +++  +P  + E   R  F K+G I
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255

Query: 119 TDLYMPKDQRSKTHRGIGFITY----ANADSVENL 149
           +   + +DQ S   R  GF+ +    A A +VE +
Sbjct: 256 SSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289


>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
           chr2:15361476-15364398 REVERSE LENGTH=609
          Length = 609

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 17  TDG-LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLGNRMLEV 75
           T+G L +  ++F  L    + K+ ++GRS  +GY  F S  DA   L+IE    N +L  
Sbjct: 36  TEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDAN--LAIEKK-NNSLLNG 92

Query: 76  KVATPKEEMKAPVKKVN---RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTH 132
           K+      ++AP  + N    +F+  +P SVT A  +  F+K+G+I    +   +  K+ 
Sbjct: 93  KMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKS- 151

Query: 133 RGIGFITYANADSVENLMKETHELEGSTVVVDR 165
           RG GF+ +   D+    ++  +    ST+V D+
Sbjct: 152 RGYGFVQFEQEDAAHAAIQTLN----STIVADK 180



 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 20/184 (10%)

Query: 6   LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIE 65
           L +  +  +V  D L+E  ++FG++    + K+      RG+ +V F + +DA+      
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261

Query: 66  H--NLGNRMLEVKVATPK--------------EEMKAPVKKVNRIFIARIPPSVTEATFR 109
           +    G++ L V  A  K               E +  + KV+ I++  +  +VTE   R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321

Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVVVDRAT 167
            HF + G IT   +  D++ K+ +G GF+ ++  +   + +K  H     G  + V  A 
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKS-KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380

Query: 168 PKED 171
            KED
Sbjct: 381 KKED 384


>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
           protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
          Length = 329

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 93/188 (49%), Gaps = 21/188 (11%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E+ +L V  +P+ + +  L +   + G + D  ++ ++ T RSRGFG+VT  S+++AK  
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173

Query: 62  LSI--EHNLGNRMLEVKVATPK-------EEMKAPVKKVNR--------IFIARIPPSVT 104
           + +     +G R   VKV  P+       E M+  ++  NR        ++   +  ++T
Sbjct: 174 MQMFNSSQIGGRT--VKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 231

Query: 105 EATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETH--ELEGSTVV 162
               +  F     +    +  ++ +   RG GFI++ +A++V++ +   +  E+EG  + 
Sbjct: 232 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 291

Query: 163 VDRATPKE 170
           ++ A+ +E
Sbjct: 292 LNLASERE 299


>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr2:9388571-9390450 REVERSE LENGTH=343
          Length = 343

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
            RK+ V G+PWE   + L      +GE+E+C V+ ++ATG+++GFG+V F +   AK  L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162

Query: 63  S-IEHNLGNRMLEVKVAT 79
              +  + NR    ++A+
Sbjct: 163 KEPKKRILNRTATCQLAS 180


>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr2:9389407-9390450 REVERSE LENGTH=347
          Length = 347

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
            RK+ V G+PWE   + L      +GE+E+C V+ ++ATG+++GFG+V F +   AK  L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162

Query: 63  S-IEHNLGNRMLEVKVAT 79
              +  + NR    ++A+
Sbjct: 163 KEPKKRILNRTATCQLAS 180


>AT1G78260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:29447317-29450181 FORWARD LENGTH=287
          Length = 287

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
          K+ V G+ WE  TD ++ Y  +FGE+ + +++ ++ TG+S+G+G+VTF   D A   ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG L  E  T+++R+YF +FG IL+  I  D      +G+GFVTF E   A R    
Sbjct: 18  KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77

Query: 294 PHEI 297
           P+ +
Sbjct: 78  PNPV 81


>AT5G53720.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr5:21806622-21807012 FORWARD LENGTH=100
          Length = 100

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 3  QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          + K+ V G+PW   T+GL  Y  +FGE+    V+ + AT RS+GFG+VTF  V+ A    
Sbjct: 8  ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67

Query: 63 -SIEHNLGNRMLEVKVA 78
           +  H +  R +  K+A
Sbjct: 68 ENPNHTIDGRTVNCKLA 84



 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           KI+V  LP    TE L  YF RFG I+   +  D      +GFGFVTF E   A R    
Sbjct: 10  KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69

Query: 294 P-HEICGHQVAIDSA 307
           P H I G  V    A
Sbjct: 70  PNHTIDGRTVNCKLA 84


>AT1G78260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:29447317-29449246 FORWARD LENGTH=271
          Length = 271

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
          K+ V G+ WE  TD ++ Y  +FGE+ + +++ ++ TG+S+G+G+VTF   D A   ++
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG L  E  T+++R+YF +FG IL+  I  D      +G+GFVTF E   A R    
Sbjct: 18  KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77

Query: 294 PHEIC 298
           P+ + 
Sbjct: 78  PNPVI 82


>AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           R++ +  IP  V  + L + + + G +E   VM ++ +GRSR FG+ T  SV+DA  V  
Sbjct: 76  RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV-- 133

Query: 64  IEHNLGNRM--LEVKV--------ATP-----KEEMKAPVKKVNRIFIARIPPSVTEATF 108
           +E   GN +   E+KV        ++P     + E  A V    ++++  +  +VT+   
Sbjct: 134 VEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEML 193

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE--LEGSTVVVDRA 166
            + F + G +    + +   +    G GF+T+++ + VE  +   +   LEG  + V++A
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253


>AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 4   RKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
           R++ +  IP  V  + L + + + G +E   VM ++ +GRSR FG+ T  SV+DA  V  
Sbjct: 76  RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV-- 133

Query: 64  IEHNLGNRM--LEVKV--------ATP-----KEEMKAPVKKVNRIFIARIPPSVTEATF 108
           +E   GN +   E+KV        ++P     + E  A V    ++++  +  +VT+   
Sbjct: 134 VEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEML 193

Query: 109 RSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHE--LEGSTVVVDRA 166
            + F + G +    + +   +    G GF+T+++ + VE  +   +   LEG  + V++A
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253


>AT3G52660.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19522598-19524735 FORWARD LENGTH=471
          Length = 471

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 10  GIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLG 69
           GIP +     LK +    GE+ +  +M+E+ +G  +G+ +VTF S D A   +   +N  
Sbjct: 98  GIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTD 157

Query: 70  NRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD-Q 127
            R   +K +T + +        +R+F+  +P +  E+  +    + G  +  + +PK+ Q
Sbjct: 158 FRGKRIKCSTTQAK--------HRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQ 209

Query: 128 RSKTHRGIGFITYANADSVE 147
               +RG  FI Y N    E
Sbjct: 210 NMGRNRGFAFIEYYNHACAE 229


>AT3G52660.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19522598-19524735 FORWARD LENGTH=471
          Length = 471

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 10  GIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEHNLG 69
           GIP +     LK +    GE+ +  +M+E+ +G  +G+ +VTF S D A   +   +N  
Sbjct: 98  GIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTD 157

Query: 70  NRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG-DITDLYMPKD-Q 127
            R   +K +T + +        +R+F+  +P +  E+  +    + G  +  + +PK+ Q
Sbjct: 158 FRGKRIKCSTTQAK--------HRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQ 209

Query: 128 RSKTHRGIGFITYANADSVE 147
               +RG  FI Y N    E
Sbjct: 210 NMGRNRGFAFIEYYNHACAE 229


>AT2G46780.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr2:19229516-19231043 FORWARD LENGTH=336
          Length = 336

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
          K+ V G+ WE   D ++ Y  +FGE+ + +V+ ++ TGRS+G+G+VTF   + A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 18  DGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDD-AKNVLSIE-HNLGNRMLEV 75
           D LK    ++G++   +VMK+   G+S+GFG+V F + DD A+ V S+  H   ++   V
Sbjct: 229 DDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287

Query: 76  KVATPKEEMKAPVK--------------KVNRIFIARIPPSVTEATFRSHFEKYGDITDL 121
             A  K E +  ++              + + +++  + PS+++   +  F  +G +T  
Sbjct: 288 GRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSS 347

Query: 122 YMPKDQRSKTHRGIGFITYANADSVENLMKET--HELEGSTVVVDRATPKED 171
            + +D    T +G GF+ +A  +     M +     +E   + V  A  KED
Sbjct: 348 KVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398


>AT1G03457.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:861109-864019 REVERSE LENGTH=438
          Length = 438

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E+ KL V  +P  +    L     +F  + +  ++KE+ T   RG  ++T  + +DA  V
Sbjct: 10  ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69

Query: 62  LSIEHNL-----GNRMLEVKVATPKEE----MKAPVKKVNRIFIARIPPSVTEATFRSHF 112
           ++  HN       +  L+VK A  + E    +       +++F+  +P +V+E   +S F
Sbjct: 70  INSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLF 129

Query: 113 EKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
            +YG I DL + +    +T +G  F+ Y + +     M+     H +EG+ V
Sbjct: 130 SEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANV 180


>AT1G22910.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:8105808-8107659 FORWARD LENGTH=249
          Length = 249

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 40/58 (68%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE   + +K++  +FGE+ + +V+ ++A+GRS+G+G+VTF   + A++  
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71


>AT1G22910.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:8105808-8107618 FORWARD LENGTH=242
          Length = 242

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 40/58 (68%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE   + +K++  +FGE+ + +V+ ++A+GRS+G+G+VTF   + A++  
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71


>AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:8383856-8386604 FORWARD LENGTH=613
          Length = 613

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           QR + V G  W+   + LK     +GE+E+C V+ ++ TGR +G+G+V F +   A+  L
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466

Query: 63  SI-EHNLGNRMLEVKVATPK-------EEMKAPV 88
              E  + NR++   +A+ K       ++M  PV
Sbjct: 467 KRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPV 500


>AT1G03457.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:861109-864019 REVERSE LENGTH=429
          Length = 429

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           E+ KL V  +P  +    L     +F  + +  ++KE+ T   RG  ++T  + +DA  V
Sbjct: 10  ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKV 69

Query: 62  LSIEHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYG 116
           ++  HN       +  L+VK A  + E     +  +++F+  +P +V+E   +S F +YG
Sbjct: 70  INSFHNKKTLPGASSPLQVKYADGELE-----RLEHKLFVGMLPKNVSETEVQSLFSEYG 124

Query: 117 DITDLYMPKDQRSKTHRGIGFITYANADSVENLMKET---HELEGSTV 161
            I DL + +    +T +G  F+ Y + +     M+     H +EG+ V
Sbjct: 125 TIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANV 171


>AT1G22910.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:8105808-8107949 FORWARD LENGTH=347
          Length = 347

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 40/58 (68%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE   + +K++  +FGE+ + +V+ ++A+GRS+G+G+VTF   + A++  
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71


>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9207164-9214412 REVERSE LENGTH=747
          Length = 747

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  +P     + ++ Y  + G + +  ++K++ TG+ +G  +V + +  DA   +  
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 65  EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
            HN      G   ++V+ A  + E    ++   ++F+  +    TE      F ++G + 
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 238

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
           D+Y+ +D+  ++ RG GF+ Y++ ++ 
Sbjct: 239 DVYLMRDEYRQS-RGCGFVKYSSKETA 264



 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
           GS  G     R    K+FVG +P+ AT E++R YF + G++L+V + +D +    +G  F
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165

Query: 279 VTFAEDGVADRVARRPH 295
           V +A    ADR  R  H
Sbjct: 166 VKYATSKDADRAIRALH 182


>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9208564-9214412 REVERSE LENGTH=533
          Length = 533

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  +P     + ++ Y  + G + +  ++K++ TG+ +G  +V + +  DA   +  
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 65  EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
            HN      G   ++V+ A  + E    ++   ++F+  +    TE      F ++G + 
Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 238

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
           D+Y+ +D+  ++ RG GF+ Y++ ++ 
Sbjct: 239 DVYLMRDEYRQS-RGCGFVKYSSKETA 264



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
           GS  G     R    K+FVG +P+ AT E++R YF + G++L+V + +D +    +G  F
Sbjct: 106 GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 165

Query: 279 VTFAEDGVADRVARRPH 295
           V +A    ADR  R  H
Sbjct: 166 VKYATSKDADRAIRALH 182


>AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=293
          Length = 293

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 21/187 (11%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL-- 62
           +L V  IP   D   L +    FG +    V +   TG SRG GYVT  S++ AK  +  
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168

Query: 63  ---------------SIEHNLGNRML-EVKVATPKEEMKAPVKKVNRIFIARIPPSVTEA 106
                          S++ N G R   EV  +TPK+ +    +  +++++  +P      
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLPWFTQPD 226

Query: 107 TFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK-ETHELEGSTVVVDR 165
             R+HF K+G I    +  D+++  +R   F+++ + +  +  +     + EG  ++V  
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVRE 286

Query: 166 ATPKEDD 172
              K + 
Sbjct: 287 GIEKSES 293



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           Q K+ V  +PW    DGL+ + SKFG +    V+ +R TGR+R F +++FTS ++    L
Sbjct: 211 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 270

Query: 63  S 63
           S
Sbjct: 271 S 271


>AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding |
           chr4:9207164-9214187 REVERSE LENGTH=672
          Length = 672

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL V  +P     + ++ Y  + G + +  ++K++ TG+ +G  +V + +  DA   +  
Sbjct: 46  KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 105

Query: 65  EHNL-----GNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDIT 119
            HN      G   ++V+ A  + E    ++   ++F+  +    TE      F ++G + 
Sbjct: 106 LHNQITLPGGTGPVQVRYADGERERIGTLE--FKLFVGSLNKQATEKEVEEIFLQFGHVE 163

Query: 120 DLYMPKDQRSKTHRGIGFITYANADSV 146
           D+Y+ +D+  ++ RG GF+ Y++ ++ 
Sbjct: 164 DVYLMRDEYRQS-RGCGFVKYSSKETA 189



 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 219 GSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGF 278
           GS  G     R    K+FVG +P+ AT E++R YF + G++L+V + +D +    +G  F
Sbjct: 31  GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCF 90

Query: 279 VTFAEDGVADRVARRPH 295
           V +A    ADR  R  H
Sbjct: 91  VKYATSKDADRAIRALH 107


>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 26/173 (15%)

Query: 20  LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH--NLGNRMLEVKV 77
           L +   +FG    C++M++   G+S+GFG+V F + DDA   +   +     ++   V  
Sbjct: 240 LNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298

Query: 78  ATPKEEMKAPVKKV--------------NRIFIARIPPSVTEATFRSHFEKYGDITDLYM 123
           A  K E +  +K+               + +++  +  SVT+   R HF  +G IT   +
Sbjct: 299 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358

Query: 124 PKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVV-----VDRATPKED 171
            +D  S   RG GF+ ++   + E   +   E+ G  +V     V  A  KED
Sbjct: 359 MRDP-SGVSRGSGFVAFS---TPEEATRAITEMNGKMIVTKPLYVALAQRKED 407


>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
           chr1:18416740-18419753 FORWARD LENGTH=671
          Length = 671

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 26/173 (15%)

Query: 20  LKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSIEH--NLGNRMLEVKV 77
           L +   +FG    C++M++   G+S+GFG+V F + DDA   +   +     ++   V  
Sbjct: 240 LNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGK 298

Query: 78  ATPKEEMKAPVKKV--------------NRIFIARIPPSVTEATFRSHFEKYGDITDLYM 123
           A  K E +  +K+               + +++  +  SVT+   R HF  +G IT   +
Sbjct: 299 AQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358

Query: 124 PKDQRSKTHRGIGFITYANADSVENLMKETHELEGSTVV-----VDRATPKED 171
            +D  S   RG GF+ ++   + E   +   E+ G  +V     V  A  KED
Sbjct: 359 MRDP-SGVSRGSGFVAFS---TPEEATRAITEMNGKMIVTKPLYVALAQRKED 407


>AT1G76460.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:28686932-28688506 REVERSE LENGTH=285
          Length = 285

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 40/59 (67%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS 63
          K+ V G+ WE  ++ L+++  ++GE+ + +V+ ++ TGRS+G+G+VTF   + A+   +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           K+FVG L  E  +E LRQ+F ++G IL+  +  D      +G+GFVTF +   A R    
Sbjct: 25  KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84

Query: 294 PHEI 297
           P  I
Sbjct: 85  PTPI 88


>AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr5:1878497-1879515 FORWARD LENGTH=146
          Length = 146

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           KL + G+ +     GL E  SK G++ +  ++ +R + RS+GFG+VTF S D+A+  L +
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL-M 93

Query: 65  EHN---LGNRMLEVKVATPKEEM 84
           E N   L  R + V  A  K+ +
Sbjct: 94  EFNGQQLNGRTIFVDYAKAKQSL 116


>AT2G22100.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:9392397-9393545 REVERSE LENGTH=382
          Length = 382

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           QR + V G+ W+   + LK     +GE+ +C V+ ++ TGR++GFG+V F +   A+  L
Sbjct: 162 QRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221

Query: 63  -SIEHNLGNRMLEVKVATP-----KEEMKAPVKKV 91
            + E  + NR +    A P       E + PV+ V
Sbjct: 222 KNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256


>AT4G20030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:10846362-10847246 FORWARD LENGTH=152
          Length = 152

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
           K++V  +P+    D LK   S FGE+ +  ++K+ A  RS+G+ ++ FTS DDA   L+I
Sbjct: 41  KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDA--FLAI 98

Query: 65  E----HNLGNRMLEVKVATP 80
           E         RM+ + +A P
Sbjct: 99  ETMDRRMYNGRMIYIDIAKP 118


>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein
          6 | chr1:6415226-6416283 FORWARD LENGTH=155
          Length = 155

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLSI 64
          K+ V G+    D + LKE    FG++ D +V+ +R +G SRGFG+VT+ S++ A N +  
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96

Query: 65 EHN 67
            N
Sbjct: 97 MQN 99


>AT1G33470.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:12144632-12146040 FORWARD LENGTH=245
          Length = 245

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE     L+ Y  +FG++ + +V+ ++++GRS+G+G+VTF   + A+   
Sbjct: 8  KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65


>AT1G33470.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:12144632-12146040 FORWARD LENGTH=244
          Length = 244

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE     L+ Y  +FG++ + +V+ ++++GRS+G+G+VTF   + A+   
Sbjct: 8  KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65


>AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=294
          Length = 294

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 3   QRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
           Q K+ V  +PW    DGL+ + SKFG +    V+ +R TGR+R F +++FTS ++    L
Sbjct: 212 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL 271

Query: 63  S 63
           S
Sbjct: 272 S 272



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 22/188 (11%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDC-IVMKERATGRSRGFGYVTFTSVDDAKNVL- 62
           +L V  IP   D   L +    FG +    +V +   TG SRG GYVT  S++ AK  + 
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168

Query: 63  ----------------SIEHNLGNRML-EVKVATPKEEMKAPVKKVNRIFIARIPPSVTE 105
                           S++ N G R   EV  +TPK+ +    +  +++++  +P     
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM--YESQHKVYVGNLPWFTQP 226

Query: 106 ATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMK-ETHELEGSTVVVD 164
              R+HF K+G I    +  D+++  +R   F+++ + +  +  +     + EG  ++V 
Sbjct: 227 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVR 286

Query: 165 RATPKEDD 172
               K + 
Sbjct: 287 EGIEKSES 294


>AT5G11412.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3640349-3640876 REVERSE LENGTH=175
          Length = 175

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 5   KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
           K+ V G+PWE   +GL+ Y  +FG++    ++ +R TGRS G+G+VTF   + A
Sbjct: 53  KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESA 106



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVADRVARR 293
           KI+VG LP E   E LR YF +FG I+ V +  D +     G+GFVTF +   A R  + 
Sbjct: 53  KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112

Query: 294 P 294
           P
Sbjct: 113 P 113


>AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr3:2555034-2555829 REVERSE LENGTH=143
          Length = 143

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
          KL + G+ W VD   LK+  S FGE+ +  +  ++ +GRSRGFG+V F    DA
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA 95


>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
           28 | chr5:6268925-6271158 REVERSE LENGTH=236
          Length = 236

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 235 IFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVT--FAEDGVADRVAR 292
           + + +LP +A   DLR  F RFG + D+Y+PR+      RGFGFV   +AED  A+ + R
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED-AAEAMKR 107

Query: 293 RPHEIC-GHQVAI 304
             H++  G ++AI
Sbjct: 108 MNHKVIGGREIAI 120


>AT1G20880.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:7262879-7264834 REVERSE LENGTH=274
          Length = 274

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 38/58 (65%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE  ++ L+ +  ++G++ + +V+ ++ TGRS+G+G+VTF   + A+   
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82


>AT1G20880.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr1:7262879-7264834 REVERSE LENGTH=274
          Length = 274

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 38/58 (65%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVL 62
          K+ V G+ WE  ++ L+ +  ++G++ + +V+ ++ TGRS+G+G+VTF   + A+   
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82


>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
           chr2:9943209-9946041 FORWARD LENGTH=662
          Length = 662

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 6   LVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNVLS-I 64
           L V  + + V    L +Y ++  ++    V ++ AT  S G+GYV +++ DDA+  +  +
Sbjct: 48  LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query: 65  EHNLGNRMLEVKVATPKEEMKAPVKKVNRIFIARIPPSVTEATFRSHFEKYGDITDLYMP 124
            ++  N  + +++     +  A    V  +F+  +  SV   T    F   G I    + 
Sbjct: 108 NYSYLNGKM-IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166

Query: 125 KDQRSKTHRGIGFITYANADSVENLMKETH 154
            D   ++ RG GF+ +   DS +N +++ +
Sbjct: 167 TDHMGQS-RGYGFVQFDTEDSAKNAIEKLN 195


>AT5G08695.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:2829341-2834189 FORWARD LENGTH=690
          Length = 690

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 93  RIFIARIPPSVTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKE 152
           R+F+  +P S TE     HF K+GDI+++++  D+ +++ RG+ F+ Y   +S +  M +
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287

Query: 153 THEL--EGSTVVVDRATPK 169
             +L  +G T+ +  A P+
Sbjct: 288 LDKLPFQGRTLHILPAKPR 306


>AT5G53680.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
          protein | chr5:21798382-21799109 FORWARD LENGTH=169
          Length = 169

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 5  KLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDA 58
          K+ V G+PW    +GL  +  +FGE+    V+ +R T RS+G+G+VTF   + A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESA 67


>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
          2 | chr4:8021314-8022065 FORWARD LENGTH=144
          Length = 144

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 1  MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
          +   KL + G+ W  D   L++  + FG++ D  V+ +R TGRSRGFG+V F 
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84


>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
          2 | chr4:8021314-8022065 FORWARD LENGTH=153
          Length = 153

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 1  MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
          +   KL + G+ W  D   L++  + FG++ D  V+ +R TGRSRGFG+V F 
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84


>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
          RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
          LENGTH=158
          Length = 158

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 1  MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
          +   KL + G+ W  D   L++  + FG++ D  V+ +R TGRSRGFG+V F 
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84


>AT2G16940.2 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=610
          Length = 610

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 24/175 (13%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +QR +    I        + E+ S+ G++ D  ++ +R + RSRG GYV F         
Sbjct: 229 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 288

Query: 62  LSIEHN--LGNRMLEVKVATPKEEMKAPVKKVN-----------------RIFIARIPPS 102
           +++     LG  ++      P E  K  V+                    R+++  +  +
Sbjct: 289 IALSGQPLLGQPVM----VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHIN 344

Query: 103 VTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
           ++E   R  FE +G +  + +P+D+ +   +G GF+ +A  +   N +    +LE
Sbjct: 345 MSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLE 398


>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein
          2 | chr4:8021314-8022065 FORWARD LENGTH=129
          Length = 129

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 1  MEQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFT 53
          +   KL + G+ W  D   L++  + FG++ D  V+ +R TGRSRGFG+V F 
Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84


>AT5G09880.1 | Symbols:  | Splicing factor, CC1-like |
           chr5:3081646-3085179 REVERSE LENGTH=527
          Length = 527

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 18/177 (10%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +QR +    +P +     + E+ SK G++ D  ++ +R + RS+G GY+ F  V      
Sbjct: 166 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225

Query: 62  LSIEHNLGNRMLEVKVATPKEEMKAPVKKVN------------RIFIARIPPSVTEATFR 109
           +++    G   L   V     E +  + + N            ++++  +  +++E   R
Sbjct: 226 IALS---GQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLR 282

Query: 110 SHFEKYGDITDLYMPKDQRSKTHRGIGFITYA---NADSVENLMKETHELEGSTVVV 163
             FE +G +  + +P D  +   +G GFI +    ++ + +  +    E+ G T+ V
Sbjct: 283 QIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339


>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632695 FORWARD
           LENGTH=287
          Length = 287

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
           +R++   + V +L  +   EDLR+ F +FG + D+Y+PRD      RGFGFV F +   A
Sbjct: 31  SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90


>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632567 FORWARD
           LENGTH=220
          Length = 220

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 228 AREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTFAEDGVA 287
           +R++   + V +L  +   EDLR+ F +FG + D+Y+PRD      RGFGFV F +   A
Sbjct: 31  SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90


>AT2G16940.1 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=561
          Length = 561

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 24/175 (13%)

Query: 2   EQRKLVVLGIPWEVDTDGLKEYMSKFGELEDCIVMKERATGRSRGFGYVTFTSVDDAKNV 61
           +QR +    I        + E+ S+ G++ D  ++ +R + RSRG GYV F         
Sbjct: 180 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239

Query: 62  LSIEHN--LGNRMLEVKVATPKEEMKAPVKKVN-----------------RIFIARIPPS 102
           +++     LG  ++      P E  K  V+                    R+++  +  +
Sbjct: 240 IALSGQPLLGQPVM----VKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHIN 295

Query: 103 VTEATFRSHFEKYGDITDLYMPKDQRSKTHRGIGFITYANADSVENLMKETHELE 157
           ++E   R  FE +G +  + +P+D+ +   +G GF+ +A  +   N +    +LE
Sbjct: 296 MSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLE 349


>AT3G06970.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2199653-2201150 REVERSE LENGTH=317
          Length = 317

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 234 KIFVGHLPQEATTEDLRQYFGRFGHILDVYIPRDAKRSGHRGFGFVTF 281
           KIFVG+L    T +DLR+YF +FG ++D  +  +      +G+GF+TF
Sbjct: 13  KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60