Miyakogusa Predicted Gene
- Lj2g3v1875620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1875620.1 Non Chatacterized Hit- tr|C0HG16|C0HG16_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,44.17,3e-17,Remorin_C,Remorin, C-terminal; FAMILY NOT NAMED,NULL;
seg,NULL; coiled-coil,NULL,CUFF.37989.1
(427 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45207.2 | Symbols: | Remorin family protein | chr1:17130703... 147 1e-35
AT4G36970.1 | Symbols: | Remorin family protein | chr4:17429826... 142 5e-34
AT1G53860.1 | Symbols: | Remorin family protein | chr1:20107165... 64 2e-10
AT1G30320.1 | Symbols: | Remorin family protein | chr1:10680348... 63 4e-10
AT2G02170.2 | Symbols: | Remorin family protein | chr2:556595-5... 62 8e-10
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556595-5... 62 8e-10
AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301623... 62 9e-10
AT2G41870.1 | Symbols: | Remorin family protein | chr2:17471119... 61 1e-09
AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333137... 58 1e-08
>AT1G45207.2 | Symbols: | Remorin family protein |
chr1:17130703-17133548 REVERSE LENGTH=555
Length = 555
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 189/419 (45%), Gaps = 74/419 (17%)
Query: 29 PGAPYYRERTRDHQNQKGWSSERVSNSKLNNFSRRHTMSGLTPFNFIGGGRTMPSKWDEA 88
PG P Y H QKGWSSERV +N R +G P + GRT+PSKW++A
Sbjct: 187 PGTPTYL-----HSMQKGWSSERVP--LRSNGGRSPPNAGFLP---LYSGRTVPSKWEDA 236
Query: 89 ERWICSPVSAAEXXXXXXXXXXXXXPKXXXXXXXXXXXXXXVAANFYSPGIQHRQGFVVR 148
ERWI SP++ PK + YSP + G +
Sbjct: 237 ERWIVSPLAKEGAARTSFGASHERRPKAKSGPLGPPGFAYY---SLYSPAVPMVHGGNMG 293
Query: 149 NLMVGSPFSTGVLAPVAVSVHHYYDPHGHDVDDGVSVYGCDIDNVGMQYAGPVHSSTSTV 208
L SPFS GVL P VS + + ID M + +H + T+
Sbjct: 294 GLTASSPFSAGVL-PETVSSR----------GSTTAAFPQRID-PSMARSVSIHGCSETL 341
Query: 209 PMCSQLPPSPLSTDEKHDVLKNEETLMSLSARCDKGTQMSPEESENDS------HSSRKS 262
SQ D+ H+ +K+ T +R D TQMSPE S S S
Sbjct: 342 ASSSQ--------DDIHESMKDAATDAQAVSRRDMATQMSPEGSIRFSPERQCSFSPSSP 393
Query: 263 STNSVMDQQACHSPKLEVRDVQVDCQATVVRGSKRH-------STKLTKKDSLHSTDSRE 315
S + + HS + EV+D+QVD + TV R SK+H +K+ +D +H +
Sbjct: 394 SPLPISELLNAHSNRAEVKDLQVDEKVTVTRWSKKHRGLYHGNGSKM--RDHVHG----K 447
Query: 316 NSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLE-----MKLEKKR 370
+ +TC EEA+II+WENLQKAKAEAAIRKLE MKLEKKR
Sbjct: 448 ATNHEDLTC-------------ATEEARIISWENLQKAKAEAAIRKLEKYFPQMKLEKKR 494
Query: 371 SSSMDKILNKLRRAQLKAENKRSVMPVQQVSKLC--KVFSFPK--YVQIWSPGTCFRSH 425
SSSM+KI+ K++ A+ +AE R + +VS K SF + +I S CF H
Sbjct: 495 SSSMEKIMRKVKSAEKRAEEMRRSVLDNRVSTASHGKASSFKRSGKKKIPSLSGCFTCH 553
>AT4G36970.1 | Symbols: | Remorin family protein |
chr4:17429826-17431459 REVERSE LENGTH=427
Length = 427
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 191/391 (48%), Gaps = 61/391 (15%)
Query: 29 PGAPYYRERTRDHQNQKGWSSERVSNSKLN------NFSRRHTMSG---LTPFNFIGGGR 79
PGAP Y + KGWSSERV + N RRH S TPF GR
Sbjct: 17 PGAPSY-------ADNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFY---SGR 66
Query: 80 TMPSKWDEAERWICSPVSA--------AEXXXXXXXXXXXXXPKXXXXXXXXXXXXXXVA 131
+PSKW++AERWICSPVS + P A
Sbjct: 67 AIPSKWEDAERWICSPVSTYPQGVCLNSSVSSEQRRQKSKSGPIVPPTLPHPHPTSSSSA 126
Query: 132 AN--FYSPGIQHR-QGFVVRNLMV-GSPFSTGVLAPVAVSVHHYYDPHGHDVDDGVSVYG 187
YSP + R + LMV GSPFSTGVL D V
Sbjct: 127 TGCYHYSPRMMMRSMDAPPKGLMVAGSPFSTGVLE-----------------ADRVFRGS 169
Query: 188 CDIDNVGMQYAGPVHS-STSTVPMCSQLPPSPLS---TDEKHDVLKNEETLMSLSARCDK 243
GP H S S V + S+ S S T+EK ++ ++ + +R D
Sbjct: 170 VGGGGCDGYGRGPGHGHSRSWVDLMSEETSSLSSKTDTEEKAEMTTAMQS--PVVSRRDM 227
Query: 244 GTQMSPEESENDSHSSRKSSTNSVMDQQACHSPKLEVRDVQVDCQATVVRGSKRH--STK 301
TQMSPEE+ ++++ SV++ C EVR+V++D A +++ KR S++
Sbjct: 228 ATQMSPEETSPNNNNQSPPLVVSVIEPPPCRG---EVREVKMDKGARMIKRPKRRVMSSR 284
Query: 302 LTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRK 361
+ +++ D+ + A A + WDI E + SKLQREEAKI AWENLQKAKAEAAIRK
Sbjct: 285 IIRREQPEVEDN--SEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAAIRK 342
Query: 362 LEMKLEKKRSSSMDKILNKLRRAQLKAENKR 392
LE+KLEKK+S+SMDKILNKL+ A++KA+ R
Sbjct: 343 LEVKLEKKKSASMDKILNKLQTAKIKAQEMR 373
>AT1G53860.1 | Symbols: | Remorin family protein |
chr1:20107165-20109458 REVERSE LENGTH=442
Length = 442
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 314 RENSAEAQVTCWDIEESTLDN-SKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSS 372
R + +E++ WD E+ + + QREEAKI AW NL+ AKAEA RKLE+K++K RS+
Sbjct: 318 RRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVNLENAKAEAQSRKLEVKIQKMRSN 377
Query: 373 SMDKILNKLRRAQLKAENKRSVMPVQQVSKLCKV 406
+K++ ++ +AE+ R+ Q V ++ K
Sbjct: 378 LEEKLMKRMDMVHRRAEDWRATARQQHVEQMQKA 411
>AT1G30320.1 | Symbols: | Remorin family protein |
chr1:10680348-10682852 FORWARD LENGTH=509
Length = 509
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 60/96 (62%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
E + T W+ E + N++ +REE +I AWE+ +KAK EA +R++E K+E+ ++ + KI+
Sbjct: 396 EKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKAEAEAKIM 455
Query: 379 NKLRRAQLKAENKRSVMPVQQVSKLCKVFSFPKYVQ 414
K+ A+ ++E KR++ ++ K + +Y++
Sbjct: 456 KKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIR 491
>AT2G02170.2 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 296 KRHSTKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKA 355
K ST L K SL ++ S +EA+ T W+ E ++ +REE KI AWEN QKAK+
Sbjct: 354 KDASTSLKTKASLQTSKS---VSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKS 410
Query: 356 EAAIRKLEMKLEKKRSSSMDKILNKL 381
EA ++K E+K+E+ + + D+++ KL
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKL 436
>AT2G02170.1 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 296 KRHSTKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKA 355
K ST L K SL ++ S +EA+ T W+ E ++ +REE KI AWEN QKAK+
Sbjct: 354 KDASTSLKTKASLQTSKS---VSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKS 410
Query: 356 EAAIRKLEMKLEKKRSSSMDKILNKL 381
EA ++K E+K+E+ + + D+++ KL
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKL 436
>AT3G57540.1 | Symbols: | Remorin family protein |
chr3:21301623-21302924 REVERSE LENGTH=296
Length = 296
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 58/96 (60%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
EA++T W + N++ +R++A I W N Q +A + ++K+E KLE +R+ +M+K
Sbjct: 186 EAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAKAMEKTQ 245
Query: 379 NKLRRAQLKAENKRSVMPVQQVSKLCKVFSFPKYVQ 414
NK+ +AQ KAE +R+ ++ +++ +V ++
Sbjct: 246 NKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMR 281
>AT2G41870.1 | Symbols: | Remorin family protein |
chr2:17471119-17472519 REVERSE LENGTH=274
Length = 274
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 319 EAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIL 378
EA++T W + N++ +RE+A I W N Q KA + ++K+E KLE++++ +M+K
Sbjct: 164 EAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKTQ 223
Query: 379 NKLRRAQLKAENKRSVMPVQQVSKLCKV 406
N + +AQ KAE +R+ ++ +++ KV
Sbjct: 224 NNVAKAQRKAEERRATAEAKRGTEVAKV 251
>AT1G67590.1 | Symbols: | Remorin family protein |
chr1:25333137-25334472 REVERSE LENGTH=347
Length = 347
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 242 DKGTQMSPEESENDSHSSRKSSTNSVMDQQACHSP-----KLEVRDVQVDCQATVVRGSK 296
D GT+M+P S+ S ++ + + + SP + E V ++ V R
Sbjct: 151 DMGTEMTPIGSQEPSRTATPVRATTPVGRSPVTSPVRASQRGEAVGVVMETVTEVRRVES 210
Query: 297 RHSTKLTKKDSLHSTDSRENSAEAQVTCWDIEESTLDNSKLQREEAKIIAWENLQKAKAE 356
+S K+ + + ++ EA+ WD E ++ +REE KI AWEN +K KAE
Sbjct: 211 NNSEKV---NGFVESKKAMSAMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAE 267
Query: 357 AAIRKLEMKLEKKRSSSMDKILNKLRRAQLKAENKRSVMPVQQVSKLCKVFSFPKYVQ 414
++K+E+K E+ ++ + +K+ NKL + AE +R+ + K K Y++
Sbjct: 268 MEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIR 325