Miyakogusa Predicted Gene
- Lj2g3v1873570.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1873570.2 Non Chatacterized Hit- tr|H2R136|H2R136_PANTR
Uncharacterized protein OS=Pan troglodytes
GN=ENSG0000,38.24,2e-18,UNKNOWN PROTEIN,NULL; SPLICING FACTOR
(SUPPRESSOR OF WHITE APRICOT),NULL; coiled-coil,NULL;
DRY_EERY,CUFF.38006.2
(549 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36980.4 | Symbols: | FUNCTIONS IN: molecular_function unkno... 450 e-126
AT4G36980.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 450 e-126
AT4G36980.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 450 e-126
AT4G36980.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 446 e-125
>AT4G36980.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor
of white apricot (InterPro:IPR019147). |
chr4:17433861-17437012 REVERSE LENGTH=556
Length = 556
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/458 (56%), Positives = 296/458 (64%), Gaps = 8/458 (1%)
Query: 1 MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQAT 60
MWHEARRSEKKVHDMMDAARKRAQRRA+YLAKRRGDP QSIQ VG R R +RDD LYQAT
Sbjct: 1 MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQAT 60
Query: 61 QDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSHRRV--QXXXXXXXXXXXFVNFERYRD 118
+DQQGLIPWNGKQD++IDRFDGRALLDF+R++ R V FVNFERYRD
Sbjct: 61 EDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRD 120
Query: 119 LIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAANKGSYSQVGFSYGGNGKX 178
LIKHRRRGF+DEE LQHV+QE+EAK A PF+ R+ QP ANKG+YSQVGFSY GNGK
Sbjct: 121 LIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGK- 179
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEIIAKEFGVKRYGWLVYMDXXXXXX 238
GME IAK+FG+KRYGWLVYMD
Sbjct: 180 -DNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEE 238
Query: 239 XXXXXXMIKGDPAIRKLSRKERRKASQIXXXXXXXSTRVSGTRVLHHDPYREPRRSPTYE 298
+IKGDP+I+KLSRKERRK S+I ++R G +++HHDPYRE RRSPTYE
Sbjct: 239 EKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYE 298
Query: 299 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGTPKIEYITEF-GGSGETAEPRREG 357
A K PKIEYITEF GGSG+ P+ EG
Sbjct: 299 AYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISK---PKIEYITEFGGGSGDMRSPKFEG 355
Query: 358 FSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTKVWKPSVSTXXXXXXXXX 417
+SPPRSPPS D+L+R S G ILEALHVDPAS +S++KDK K K +VST
Sbjct: 356 YSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSK 415
Query: 418 XXXXXPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDT 455
K Q EKKETPQERLKRIMN+QLTKQIKKD+
Sbjct: 416 VAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDS 453
>AT4G36980.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor
of white apricot (InterPro:IPR019147); Has 7672 Blast
hits to 5479 proteins in 321 species: Archae - 0;
Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants -
341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI
BLink). | chr4:17433861-17437012 REVERSE LENGTH=555
Length = 555
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/458 (56%), Positives = 296/458 (64%), Gaps = 8/458 (1%)
Query: 1 MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQAT 60
MWHEARRSEKKVHDMMDAARKRAQRRA+YLAKRRGDP QSIQ VG R R +RDD LYQAT
Sbjct: 1 MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQAT 60
Query: 61 QDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSHRRV--QXXXXXXXXXXXFVNFERYRD 118
+DQQGLIPWNGKQD++IDRFDGRALLDF+R++ R V FVNFERYRD
Sbjct: 61 EDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRD 120
Query: 119 LIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAANKGSYSQVGFSYGGNGKX 178
LIKHRRRGF+DEE LQHV+QE+EAK A PF+ R+ QP ANKG+YSQVGFSY GNGK
Sbjct: 121 LIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGK- 179
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEIIAKEFGVKRYGWLVYMDXXXXXX 238
GME IAK+FG+KRYGWLVYMD
Sbjct: 180 -DNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEE 238
Query: 239 XXXXXXMIKGDPAIRKLSRKERRKASQIXXXXXXXSTRVSGTRVLHHDPYREPRRSPTYE 298
+IKGDP+I+KLSRKERRK S+I ++R G +++HHDPYRE RRSPTYE
Sbjct: 239 EKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYE 298
Query: 299 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGTPKIEYITEF-GGSGETAEPRREG 357
A K PKIEYITEF GGSG+ P+ EG
Sbjct: 299 AYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISK---PKIEYITEFGGGSGDMRSPKFEG 355
Query: 358 FSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTKVWKPSVSTXXXXXXXXX 417
+SPPRSPPS D+L+R S G ILEALHVDPAS +S++KDK K K +VST
Sbjct: 356 YSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSK 415
Query: 418 XXXXXPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDT 455
K Q EKKETPQERLKRIMN+QLTKQIKKD+
Sbjct: 416 VAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDS 453
>AT4G36980.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor
of white apricot (InterPro:IPR019147); Has 5391 Blast
hits to 4388 proteins in 280 species: Archae - 1;
Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants -
308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI
BLink). | chr4:17434283-17437012 REVERSE LENGTH=507
Length = 507
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/458 (56%), Positives = 296/458 (64%), Gaps = 8/458 (1%)
Query: 1 MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQAT 60
MWHEARRSEKKVHDMMDAARKRAQRRA+YLAKRRGDP QSIQ VG R R +RDD LYQAT
Sbjct: 1 MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQAT 60
Query: 61 QDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSHRRV--QXXXXXXXXXXXFVNFERYRD 118
+DQQGLIPWNGKQD++IDRFDGRALLDF+R++ R V FVNFERYRD
Sbjct: 61 EDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRD 120
Query: 119 LIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAANKGSYSQVGFSYGGNGKX 178
LIKHRRRGF+DEE LQHV+QE+EAK A PF+ R+ QP ANKG+YSQVGFSY GNGK
Sbjct: 121 LIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGK- 179
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEIIAKEFGVKRYGWLVYMDXXXXXX 238
GME IAK+FG+KRYGWLVYMD
Sbjct: 180 -DNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEE 238
Query: 239 XXXXXXMIKGDPAIRKLSRKERRKASQIXXXXXXXSTRVSGTRVLHHDPYREPRRSPTYE 298
+IKGDP+I+KLSRKERRK S+I ++R G +++HHDPYRE RRSPTYE
Sbjct: 239 EKRQKELIKGDPSIKKLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYE 298
Query: 299 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGTPKIEYITEF-GGSGETAEPRREG 357
A K PKIEYITEF GGSG+ P+ EG
Sbjct: 299 AYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISK---PKIEYITEFGGGSGDMRSPKFEG 355
Query: 358 FSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTKVWKPSVSTXXXXXXXXX 417
+SPPRSPPS D+L+R S G ILEALHVDPAS +S++KDK K K +VST
Sbjct: 356 YSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSK 415
Query: 418 XXXXXPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDT 455
K Q EKKETPQERLKRIMN+QLTKQIKKD+
Sbjct: 416 VAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDS 453
>AT4G36980.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor
of white apricot (InterPro:IPR019147). |
chr4:17433861-17437012 REVERSE LENGTH=554
Length = 554
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/458 (56%), Positives = 295/458 (64%), Gaps = 9/458 (1%)
Query: 1 MWHEARRSEKKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQLVGFRSRTYRDDALYQAT 60
MWHEARRSEKKVHDMMDAARKRAQRRA+YLAKRRGDP QSIQ VG R R +RDD LYQAT
Sbjct: 1 MWHEARRSEKKVHDMMDAARKRAQRRAIYLAKRRGDPIQSIQAVGSRYRVFRDDGLYQAT 60
Query: 61 QDQQGLIPWNGKQDILIDRFDGRALLDFIRDSSHRRV--QXXXXXXXXXXXFVNFERYRD 118
+DQQGLIPWNGKQD++IDRFDGRALLDF+R++ R V FVNFERYRD
Sbjct: 61 EDQQGLIPWNGKQDVMIDRFDGRALLDFVREAGSRSVRPHKKTEEEEELEEFVNFERYRD 120
Query: 119 LIKHRRRGFTDEEALQHVNQEMEAKSALPFMSDRSNLPQPAANKGSYSQVGFSYGGNGKX 178
LIKHRRRGF+DEE LQHV+QE+EAK A PF+ R+ QP ANKG+YSQVGFSY GNGK
Sbjct: 121 LIKHRRRGFSDEEGLQHVHQELEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGK- 179
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMEIIAKEFGVKRYGWLVYMDXXXXXX 238
GME IAK+FG+KRYGWLVYMD
Sbjct: 180 -DNSLDADEDDVDDDEDDEDEEEEFDSNDSDDEGMETIAKQFGIKRYGWLVYMDKKAKEE 238
Query: 239 XXXXXXMIKGDPAIRKLSRKERRKASQIXXXXXXXSTRVSGTRVLHHDPYREPRRSPTYE 298
+IKGDP+I KLSRKERRK S+I ++R G +++HHDPYRE RRSPTYE
Sbjct: 239 EKRQKELIKGDPSI-KLSRKERRKVSRIERDRERETSRSVGRQIIHHDPYRESRRSPTYE 297
Query: 299 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGTPKIEYITEF-GGSGETAEPRREG 357
A K PKIEYITEF GGSG+ P+ EG
Sbjct: 298 AYPRSRRSRSRSRSYSPSYSRRNGRGDHSDEISK---PKIEYITEFGGGSGDMRSPKFEG 354
Query: 358 FSPPRSPPSHVDMLNRSSSGCILEALHVDPASGVSIDKDKGTKVWKPSVSTXXXXXXXXX 417
+SPPRSPPS D+L+R S G ILEALHVDPAS +S++KDK K K +VST
Sbjct: 355 YSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKSTVSTSTALAKLSK 414
Query: 418 XXXXXPLKPLQGEKKETPQERLKRIMNRQLTKQIKKDT 455
K Q EKKETPQERLKRIMN+QLTKQIKKD+
Sbjct: 415 VAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDS 452