Miyakogusa Predicted Gene
- Lj2g3v1849250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1849250.1 Non Chatacterized Hit- tr|I1K214|I1K214_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,46.27,8e-19,PROKAR_LIPOPROTEIN,NULL,CUFF.37958.1
(125 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66816.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 59 1e-09
AT3G50610.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 51 2e-07
>AT5G66816.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26681495-26681800 FORWARD LENGTH=101
Length = 101
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 14/64 (21%)
Query: 55 YTNAFEPTTPGNSPGVGHRSFAGEDNKMVAAQSPDVGVSVTQGSESDFKPTDPGHSPGVG 114
YT+ F PT+PGNSPG+GH+ E+N G + DF+PT PGHSPGVG
Sbjct: 46 YTDDFGPTSPGNSPGIGHKMKENEEN--------------AGGYKDDFEPTTPGHSPGVG 91
Query: 115 HAYQ 118
HA +
Sbjct: 92 HAVK 95
>AT3G50610.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in
16 species: Archae - 0; Bacteria - 2; Metazoa - 10;
Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes -
12 (source: NCBI BLink). | chr3:18779723-18780412
REVERSE LENGTH=229
Length = 229
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 49 DAAGASYTNAFEPTTPGNSPGVGHRS------------FAGEDNKMVAAQSPDVGVSVTQ 96
D A +T+ F PT+PGNSPGVGH+ E K++ D
Sbjct: 22 DHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQD---HFKT 78
Query: 97 GSESDFKPTDPGHSPGVGHAYQEKIGHLN 125
GS DF PT PGHSPGVGH K G++N
Sbjct: 79 GSTDDFAPTSPGHSPGVGH----KKGNVN 103
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 24/63 (38%)
Query: 56 TNAFEPTTPGNSPGVGHRSFAGEDNKMVAAQSPDVGVSVTQGSESDFKPTDPGHSPGVGH 115
T+ F PTTPGNSPG+GH+ DFKPT PGHSPGVGH
Sbjct: 185 TDDFAPTTPGNSPGMGHKK------------------------GDDFKPTTPGHSPGVGH 220
Query: 116 AYQ 118
A +
Sbjct: 221 AVK 223
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 21/83 (25%)
Query: 56 TNAFEPTTPGNSPGVGHRSFAGEDNKMVAAQSPDV----GVSVTQ---------GSESDF 102
T+ F PT+PG+SPGVGH+ + N V + D G + Q GS DF
Sbjct: 81 TDDFAPTSPGHSPGVGHK----KGNVNVESSEDDFKHKEGRKLQQTNGQNHFKTGSTDDF 136
Query: 103 KPTDPGHSPGVGHAYQEKIGHLN 125
PT PG+SPG+GH K GH N
Sbjct: 137 APTSPGNSPGIGH----KKGHAN 155