Miyakogusa Predicted Gene

Lj2g3v1828890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1828890.1 Non Chatacterized Hit- tr|D8U1A0|D8U1A0_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,28.34,3e-16,UNCHARACTERIZED,NULL; seg,NULL;
coiled-coil,NULL,CUFF.37907.1
         (485 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37130.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   384   e-107

>AT4G37130.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr4:17489567-17491773 FORWARD LENGTH=513
          Length = 513

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/311 (62%), Positives = 226/311 (72%), Gaps = 10/311 (3%)

Query: 60  TNDRTLASYGTNWSDLHPDSQKILLQIEERILEYRDEGQRLDQFSLLYDSSVSNDGFEVD 119
           TND+  A+Y T W+DLHPDSQK+LLQIEE+ILE+R E QRLDQ S LYDSSVS++GFE D
Sbjct: 97  TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEHRSESQRLDQCSRLYDSSVSSEGFEFD 156

Query: 120 ACHIVQELGGISTAMERQKALLQELMSVVKDMLRNTEVAVRSFMMLRPRF-----HXXXX 174
           A  IVQELGGI+TAM+RQKA+L ELM V KDMLRN E+AVRSFMML+PRF          
Sbjct: 157 ASRIVQELGGINTAMDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVV 216

Query: 175 XXXXXXXXXXXXVXXXXXXXXXXXXXXMVPVFDFYSGLPKKPSPFLQQTVLRFEKYLGEC 234
                                       V V DFY G+PKKP+ FL QTV+RFEKYL EC
Sbjct: 217 SVGSQPSQGQGTNPAPASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNEC 276

Query: 235 HQWVXXXXXXXXXDSERNTSSNGSSLLQSLPKVMTNVHDFFVHVASKVEGIHQYIESMKS 294
            QWV         DS++   S  +SLL+SLPKVM+NVHDFFVHVA+KVE IHQYIESM++
Sbjct: 277 RQWVEELEQLLALDSDKY--SRHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRT 334

Query: 295 AYLADQRRRGEVNDPFLEADRRETARQEAASKRVHPTLHLPA---NSQPSTQVAGLFSSS 351
           +YLADQRRRGE +DPFLEADRRETA+QEAA+KRVHPTLHLPA   ++QPSTQVAGL +SS
Sbjct: 335 SYLADQRRRGECHDPFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASS 394

Query: 352 GTQGLLNAPQT 362
            T G  N PQT
Sbjct: 395 ATPGGSNPPQT 405