Miyakogusa Predicted Gene

Lj2g3v1828800.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1828800.1 tr|A4S0X5|A4S0X5_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_16330,31.78,2e-18,SHNi-TPR,Tetratricopeptide, SHNi-TPR
domain; seg,NULL; TPR-like,NULL; no
description,Tetratricopepti,CUFF.38020.1
         (462 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   250   2e-66
AT4G37210.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   166   3e-41

>AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17512376-17514421 FORWARD
           LENGTH=492
          Length = 492

 Score =  250 bits (638), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/276 (51%), Positives = 187/276 (67%), Gaps = 30/276 (10%)

Query: 216 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVEPD 275
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LVEPD
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 276 DRYIANLNFRICLCLEVDSKPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAK---- 331
            R  A LNFRIC+CLE   +P+EAI YC+KA  +CKAR++RL+NE+K  + ++ +     
Sbjct: 278 SRRTAELNFRICICLETGCQPKEAIPYCQKALLICKARMERLSNEIKGASGSATSSTVSE 337

Query: 332 --------------NKSIEDKQAEIETLTGLSSDLENKLEDLQLLVSNPKSTLSELLEKV 377
                         +KS  DK+ EI  L GL+ DLE KLEDL+    NPK  L+EL+  V
Sbjct: 338 IDEGIQQSSNVPYIDKSASDKEVEIGDLAGLAEDLEKKLEDLKQQAENPKQVLAELMGMV 397

Query: 378 AAKAGGGKESIP--AKVSSSQLATANSSGGFD--SPTISTAHS----NGSAAGVTHLGVV 429
           +AK     + +P  A++SSS++ T N++ G D  SPT+STAH+     G+A+GVTHLGVV
Sbjct: 398 SAKPNASDKVVPAAAEMSSSRMGTVNTNFGKDLESPTVSTAHTGAAGGGAASGVTHLGVV 457

Query: 430 GRGVKRTSL---APEASAPKKPALESTEGKGDSGSA 462
           GRGVKR  +   + E+SA KKPALE ++ K D  S+
Sbjct: 458 GRGVKRVLMNTTSIESSASKKPALEFSD-KADGNSS 492



 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 6   PASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETSGKNSL 65
           PA+E + ++ P+    +++ T+     G +E T     ++     + +    +   + +L
Sbjct: 20  PATEIAQTLEPN--LASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEEREKTL 77

Query: 66  ELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQ 125
           E A EL +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ
Sbjct: 78  EFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQ 137

Query: 126 EEADPLGDVPKKQEGSQHGSSKDESVKSTI 155
            EADPLG++PKK+   Q  SS  ES+  ++
Sbjct: 138 AEADPLGNMPKKEGEVQQESSNGESLAPSV 167


>AT4G37210.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17512376-17514072 FORWARD
           LENGTH=377
          Length = 377

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 108/158 (68%), Gaps = 18/158 (11%)

Query: 216 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVEPD 275
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LVEPD
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 276 DRYIANLNFRICLCLEVDSKPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAK---- 331
            R  A LNFRIC+CLE   +P+EAI YC+KA  +CKAR++RL+NE+K  + ++ +     
Sbjct: 278 SRRTAELNFRICICLETGCQPKEAIPYCQKALLICKARMERLSNEIKGASGSATSSTVSE 337

Query: 332 --------------NKSIEDKQAEIETLTGLSSDLENK 355
                         +KS  DK+ EI  L GL+ DLE K
Sbjct: 338 IDEGIQQSSNVPYIDKSASDKEVEIGDLAGLAEDLEKK 375



 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 6   PASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETSGKNSL 65
           PA+E + ++ P+    +++ T+     G +E T     ++     + +    +   + +L
Sbjct: 20  PATEIAQTLEPN--LASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEEREKTL 77

Query: 66  ELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQ 125
           E A EL +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ
Sbjct: 78  EFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQ 137

Query: 126 EEADPLGDVPKKQEGSQHGSSKDESVKSTI 155
            EADPLG++PKK+   Q  SS  ES+  ++
Sbjct: 138 AEADPLGNMPKKEGEVQQESSNGESLAPSV 167