Miyakogusa Predicted Gene

Lj2g3v1828480.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1828480.2 Non Chatacterized Hit- tr|I3SG84|I3SG84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.22,0,Ribosomal_S8e,Ribosomal protein S8e/ribosomal biogenesis
NSA2; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.37867.2
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06360.1 | Symbols:  | Ribosomal protein S8e family protein |...   257   1e-69

>AT5G06360.1 | Symbols:  | Ribosomal protein S8e family protein |
           chr5:1944835-1946512 FORWARD LENGTH=260
          Length = 260

 Score =  257 bits (657), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/129 (93%), Positives = 126/129 (97%)

Query: 1   MFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCT 60
           MF+V+R+GKRKTKQWKRMVTKATFVGP FTRKPPKYERFIRP+GLRFTKAHVTHPELKCT
Sbjct: 132 MFRVIRSGKRKTKQWKRMVTKATFVGPAFTRKPPKYERFIRPSGLRFTKAHVTHPELKCT 191

Query: 61  FNLEIIGVKKNPNGPMYTSLGVMTKGTIIEVNCSELGLVTPAGKVVWGKYAQVTNNPEND 120
           F LEIIG+KKNPNGPMYTSLGVMT+GTIIEVN SELGLVTPAGKVVWGKYAQVTNNPEND
Sbjct: 192 FCLEIIGIKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEND 251

Query: 121 GCINAVLLV 129
           GCINAVLLV
Sbjct: 252 GCINAVLLV 260