Miyakogusa Predicted Gene

Lj2g3v1828360.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1828360.2 Non Chatacterized Hit- tr|I3S5G9|I3S5G9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.68,0,ARM
repeat,Armadillo-type fold; V-TYPE PROTON ATPASE SUBUNIT H,NULL;
V-TYPE PROTON ATPASE SUBUNIT H,,CUFF.37870.2
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family...   567   e-162

>AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family
           protein | chr3:14228846-14232228 REVERSE LENGTH=441
          Length = 441

 Score =  567 bits (1461), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/345 (78%), Positives = 304/345 (88%), Gaps = 9/345 (2%)

Query: 5   FCPYFRLLQKGNWFIQEKSCKILGLIASARPKNQNGIIANGEASKSKKTTIDDVLIGLVK 64
           + P+ RLL KGNWFIQEKSCKIL  I SARPK  N +I NG         IDDVL GLV+
Sbjct: 106 YEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNG---------IDDVLKGLVE 156

Query: 65  WLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSTFVQLDGIKLLVPLISPASTQQSIQL 124
           WLC QLK+PSHPTRGVP AI+CL++LLKEPVVRS+FVQ DG+KLLVPLISPASTQQSIQL
Sbjct: 157 WLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQL 216

Query: 125 LYETCLCIWLLSYYEPAIEYLATTRTLPRLIDVVKSSTKEKVVRVVVSTLKNLLPKGTFG 184
           LYETCLCIWLLSYYEPAIEYLAT+RT+ RL +VVK STKEKVVRVV+ T +NLLPKGTFG
Sbjct: 217 LYETCLCIWLLSYYEPAIEYLATSRTMQRLTEVVKHSTKEKVVRVVILTFRNLLPKGTFG 276

Query: 185 AQMVELQLPQVVQSLKAQAWSDEDLLEALNYLEDGLKDNIKKLSSYDKYKQGVLLGHLDW 244
           AQMV+L LP ++ SLK QAWSDEDLL+ALN LE+GLKD IKKLSS+DKYKQ VLLGHLDW
Sbjct: 277 AQMVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDW 336

Query: 245 SPMHKDSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRF 304
           +PMHK++ FWREN+T FEENDFQILRVL+TILDTSSDPR+LAVACFD+SQF+Q+H AGR 
Sbjct: 337 NPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRV 396

Query: 305 IVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 349
           IV DLKAKERVMKL+NHENAEVTKNA+LCIQRL LG+KYASFLQA
Sbjct: 397 IVADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441