Miyakogusa Predicted Gene

Lj2g3v1768680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1768680.1 tr|Q18KT7|Q18KT7_HALWD Transcription initiation
factor IIB OS=Haloquadratum walsbyi (strain DSM
1679,33.62,0.0000000004,TRANSCRIPTION INITIATION FACTOR IIB,NULL;
TRANSCRIPTION INITIATION FACTOR IIB-RELATED,Transcription
,gene.g42231.t1.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...   350   4e-97
AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...   348   2e-96
AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) famil...    53   1e-07

>AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283600-17285527 REVERSE LENGTH=369
          Length = 369

 Score =  350 bits (898), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 186/219 (84%), Gaps = 7/219 (3%)

Query: 1   MEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEEDPFEPTGFLTAFSTWSL 60
           MEERQ+  HH+FHLRAQD PLCL TSDL       Q    DEEDPFEPTGF+TAFSTWSL
Sbjct: 32  MEERQTQNHHLFHLRAQDTPLCLVTSDLQTAA---QPSPEDEEDPFEPTGFITAFSTWSL 88

Query: 61  EPSPLYLQSSIAFSGHLAELERTLEXXXXXXATVVV----DNLRAYMQIIDVASILGLDC 116
           EPSP++ +SS++FSGHLAELERTLE       +       DNLRAYMQIIDVASILGLDC
Sbjct: 89  EPSPIFARSSLSFSGHLAELERTLELASSTSNSNSSTVVVDNLRAYMQIIDVASILGLDC 148

Query: 117 DISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVPQKEIG 176
           DIS+HAFQLFRDCCSATCLRNRSVEALATA LV AIREAQEPRTLQEISIAANV QKEIG
Sbjct: 149 DISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIG 208

Query: 177 KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 215
           KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ
Sbjct: 209 KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 247


>AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283283-17285527 REVERSE LENGTH=503
          Length = 503

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/219 (82%), Positives = 190/219 (86%), Gaps = 7/219 (3%)

Query: 1   MEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEEDPFEPTGFLTAFSTWSL 60
           MEERQ+  HH+FHLRAQD PLCL TSDL       Q    DEEDPFEPTGF+TAFSTWSL
Sbjct: 32  MEERQTQNHHLFHLRAQDTPLCLVTSDL---QTAAQPSPEDEEDPFEPTGFITAFSTWSL 88

Query: 61  EPSPLYLQSSIAFSGHLAELERTLE----XXXXXXATVVVDNLRAYMQIIDVASILGLDC 116
           EPSP++ +SS++FSGHLAELERTLE          +TVVVDNLRAYMQIIDVASILGLDC
Sbjct: 89  EPSPIFARSSLSFSGHLAELERTLELASSTSNSNSSTVVVDNLRAYMQIIDVASILGLDC 148

Query: 117 DISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVPQKEIG 176
           DIS+HAFQLFRDCCSATCLRNRSVEALATA LV AIREAQEPRTLQEISIAANV QKEIG
Sbjct: 149 DISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRTLQEISIAANVQQKEIG 208

Query: 177 KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 215
           KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ
Sbjct: 209 KYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 247


>AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) family
           protein | chr4:6587521-6588069 FORWARD LENGTH=182
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query: 101 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 160
           AY +I  +   LGL   IS+ A ++            +S+  L  A++  A R+   P+T
Sbjct: 94  AYAEIERMTEALGLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKT 153

Query: 161 LQEISIAANVPQKEIGKYIKILGEAL 186
           L+EIS  ANV  KEI K +K+LG++ 
Sbjct: 154 LKEISAVANVDMKEINKAVKLLGDSF 179