Miyakogusa Predicted Gene

Lj2g3v1758490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758490.1 Non Chatacterized Hit- tr|I1J8V2|I1J8V2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18802 PE,90.83,0,domain
present in cyclins, TFIIB and Retinob,Cyclin-like; TRANSCRIPTION
INITIATION FACTOR IIB,NULL; ,CUFF.37990.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...   581   e-166
AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-relat...   516   e-146
AT2G41630.1 | Symbols: TFIIB | transcription factor IIB | chr2:1...    99   5e-21
AT3G10330.1 | Symbols:  | Cyclin-like family protein | chr3:3199...    96   4e-20
AT3G57370.1 | Symbols:  | Cyclin family protein | chr3:21226839-...    54   2e-07
AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) famil...    53   3e-07

>AT4G36650.1 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283283-17285527 REVERSE LENGTH=503
          Length = 503

 Score =  581 bits (1498), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 287/336 (85%), Positives = 300/336 (89%), Gaps = 7/336 (2%)

Query: 6   MKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLP 65
           MKCPYCS+A GRC TTSSGRSITEC+SCGRVMEERQ+  HH+FHLRAQD PLCL TSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDL- 59

Query: 66  LPTLHHQNDAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXXX 125
                 Q    DEEDPFEPTGF+TAFSTWSLEPSP++ +SS++FSGHLAELERTLE    
Sbjct: 60  --QTAAQPSPEDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASS 117

Query: 126 XXATVVV----DNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 181
              +       DNLRAYMQIIDVASILGLDCDIS+HAFQLFRDCCSATCLRNRSVEALAT
Sbjct: 118 TSNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALAT 177

Query: 182 AALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 241
           A LV AIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 178 ACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 237

Query: 242 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 301
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TG
Sbjct: 238 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITG 297

Query: 302 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEWAFP 337
           LTEVTLRKVYKELLENWDDLLPSNYTPAVPPE AFP
Sbjct: 298 LTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFP 333


>AT4G36650.2 | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related
           protein | chr4:17283600-17285527 REVERSE LENGTH=369
          Length = 369

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/303 (84%), Positives = 268/303 (88%), Gaps = 7/303 (2%)

Query: 6   MKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLP 65
           MKCPYCS+A GRC TTSSGRSITEC+SCGRVMEERQ+  HH+FHLRAQD PLCL TSDL 
Sbjct: 1   MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60

Query: 66  LPTLHHQNDAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXXX 125
                 Q    DEEDPFEPTGF+TAFSTWSLEPSP++ +SS++FSGHLAELERTLE    
Sbjct: 61  TAA---QPSPEDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASS 117

Query: 126 XXATVVV----DNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALAT 181
              +       DNLRAYMQIIDVASILGLDCDIS+HAFQLFRDCCSATCLRNRSVEALAT
Sbjct: 118 TSNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALAT 177

Query: 182 AALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 241
           A LV AIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSISVHMPRFC
Sbjct: 178 ACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFC 237

Query: 242 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTG 301
           TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TG
Sbjct: 238 TLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITG 297

Query: 302 LTE 304
           LTE
Sbjct: 298 LTE 300


>AT2G41630.1 | Symbols: TFIIB | transcription factor IIB |
           chr2:17355555-17357400 REVERSE LENGTH=312
          Length = 312

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 19/203 (9%)

Query: 135 LRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEP 194
           ++A+  I  ++  LGL   I D A +L++        R R+ +AL  A L  A R+  +P
Sbjct: 106 IQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKP 165

Query: 195 RTLQEISIAAN-VPQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLLQLN 247
           RT++EI + AN   +KEIG+     +K LG  L+  Q ++  +I     M RFC+ L ++
Sbjct: 166 RTIKEICVIANGATKKEIGRAKDYIVKTLG--LEPGQSVDLGTIHAGDFMRRFCSNLAMS 223

Query: 248 ----KSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLT 303
               K+AQE      E      F  RR+PISI+A  IY+  QL D +KT  +I   TG+ 
Sbjct: 224 NHAVKAAQEAVQKSEE------FDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVA 277

Query: 304 EVTLRKVYKELLENWDDLLPSNY 326
           E T+R  YK+L  +   + PS Y
Sbjct: 278 EGTIRNSYKDLYPHLSKIAPSWY 300


>AT3G10330.1 | Symbols:  | Cyclin-like family protein |
           chr3:3199907-3201642 FORWARD LENGTH=312
          Length = 312

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 19/201 (9%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           A+  I  +A  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 108 AFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167

Query: 197 LQEI-SIAANVPQKEIGK----YIKILGEALQLSQPINSNSISV--HMPRFCTLLQLN-- 247
           ++EI S+A    +KEIG+     +K LG  L+  Q +   +I     M RFC+ L +   
Sbjct: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQLVEMGTIHAGDFMRRFCSNLGMTNQ 225

Query: 248 --KSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV 305
             K+AQE       V  ++ F  RR+PISI+AA IY+  QL D++K   +I   TG+ E 
Sbjct: 226 TVKAAQE------SVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEG 279

Query: 306 TLRKVYKELLENWDDLLPSNY 326
           T+R  YK+L  +   ++P+ Y
Sbjct: 280 TIRNSYKDLYPHLSKIIPAWY 300


>AT3G57370.1 | Symbols:  | Cyclin family protein |
           chr3:21226839-21228475 REVERSE LENGTH=360
          Length = 360

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 8/196 (4%)

Query: 139 MQIIDVASI---LGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPR 195
           + I+ + +I   L L   I   A ++F+   S    + R+V  L  A +  A R+    R
Sbjct: 159 LSIVSIEAISNGLKLPATIKGQANEIFKVVESYARGKERNV--LFAACIYIACRDNDMTR 216

Query: 196 TLQEISIAANVPQ-KEIGKYIKILGEALQLSQP-INSNSISVHMPRFCTLLQLNKSAQEL 253
           T++EIS  AN     +I + +  + E L++++    S   +  + RFC++ +L+K A E 
Sbjct: 217 TMREISRFANKASISDISETVGFIAEKLEINKNWYMSIETANFIKRFCSIFRLDKEAVEA 276

Query: 254 ATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKE 313
           A        +     RR P+S++A  +Y+  +L  ++     + + TG+ E T++  Y +
Sbjct: 277 ALEA-AESYDYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGD 335

Query: 314 LLENWDDLLPSNYTPA 329
           L  N   ++P+ +  A
Sbjct: 336 LYPNLPTIVPTWFANA 351


>AT4G10680.1 | Symbols:  | transcription factor IIB (TFIIB) family
           protein | chr4:6587521-6588069 FORWARD LENGTH=182
          Length = 182

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           AY +I  +   LGL   IS+ A ++            +S+  L  A++  A R+   P+T
Sbjct: 94  AYAEIERMTEALGLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKT 153

Query: 197 LQEISIAANVPQKEIGKYIKILGEAL 222
           L+EIS  ANV  KEI K +K+LG++ 
Sbjct: 154 LKEISAVANVDMKEINKAVKLLGDSF 179