Miyakogusa Predicted Gene

Lj2g3v1758390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758390.1 tr|A8HSJ0|A8HSJ0_CHLRE DNA-directed RNA
polymerases I/II/III subunit OS=Chlamydomonas reinhardtii
GN,52.7,5e-17,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc binding
site; RNA_pol_N,DNA-directed RNA polymerase, ,CUFF.37806.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61700.1 | Symbols:  | RNA polymerases N / 8 kDa subunit | ch...    84   2e-17
AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases ...    80   3e-16

>AT1G61700.1 | Symbols:  | RNA polymerases N / 8 kDa subunit |
          chr1:22787105-22788112 FORWARD LENGTH=71
          Length = 71

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 50/70 (71%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          ++PVRCFTCGKV+GNKW+ Y + L+   +  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTMEKSDPN 71


>AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases N
          / 8 kDa subunit | chr1:3862520-3863805 FORWARD
          LENGTH=71
          Length = 71

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 47/66 (71%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   +  +ALD+L L R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPK 66
          Y+   K
Sbjct: 62 YNTLEK 67