Miyakogusa Predicted Gene

Lj2g3v1757270.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1757270.2 Non Chatacterized Hit- tr|G7KDK6|G7KDK6_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,70.31,3e-18,
,CUFF.37798.2
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21640.1 | Symbols:  | Encodes a protein of unknown function ...    62   6e-11
AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    57   2e-09
AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    53   4e-08

>AT2G21640.1 | Symbols:  | Encodes a protein of unknown function
          that is a marker for oxidative stress response. |
          chr2:9254985-9255453 FORWARD LENGTH=104
          Length = 104

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 8/72 (11%)

Query: 1  MGSKENQT--------DEQLPVNSAPRVSFCQRNKSGNGSFVSSLRNHFHEFIHASVDEH 52
          M S+ NQT         E  P    P  S  +R K  N +F ++L++H  EFIHAS+DEH
Sbjct: 1  MASQTNQTVVDTKKIETENPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEH 60

Query: 53 KTCLRNTIQKIF 64
          KTC +NT+ KIF
Sbjct: 61 KTCFKNTMDKIF 72


>AT4G39235.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:18268514-18269034 FORWARD LENGTH=86
          Length = 86

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 38/56 (67%)

Query: 18 PRVSFCQRNKSGNGSFVSSLRNHFHEFIHASVDEHKTCLRNTIQKIFNVSKSFGKN 73
          P ++ C++    + +F   +++H  +FIHAS+DEHK+C + TI+K+F +SK+  + 
Sbjct: 11 PAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEK 66


>AT3G05570.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr3:1616265-1616636 REVERSE
          LENGTH=90
          Length = 90

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 18 PRVSFCQRNKSGNGSFVSSLRNHFHEFIHASVDEHKTCLRNTIQKIFNVSKSFG 71
          P  S C++    + +F+  +++H  +FI+AS+D+HK C   TI+K+F +SK+  
Sbjct: 14 PATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMFGLSKAVA 67