Miyakogusa Predicted Gene

Lj2g3v1757130.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1757130.2 tr|G7KDL7|G7KDL7_MEDTR DNA-3-methyladenine
glycosylase OS=Medicago truncatula GN=MTR_5g020300 PE=4
S,64.21,0,FAMILY NOT NAMED,NULL; HhH-GPD,HhH-GPD domain; no
description,DNA glycosylase; no description,Helix-,CUFF.37792.2
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75230.1 | Symbols:  | DNA glycosylase superfamily protein | ...   241   4e-64
AT1G75230.2 | Symbols:  | DNA glycosylase superfamily protein | ...   241   5e-64
AT1G19480.1 | Symbols:  | DNA glycosylase superfamily protein | ...   238   4e-63
AT1G19480.2 | Symbols:  | DNA glycosylase superfamily protein | ...   238   5e-63
AT3G50880.1 | Symbols:  | DNA glycosylase superfamily protein | ...   221   3e-58

>AT1G75230.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr1:28234444-28236452 FORWARD LENGTH=391
          Length = 391

 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 151/203 (74%), Gaps = 2/203 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+EAAL+HLR+ DPLLA+ ID  PPP F  +   TPF +L +SI+ QQL+ KA ++I +
Sbjct: 133 GELEAALHHLRSVDPLLASLIDIHPPPTF--ETFQTPFLALIRSILYQQLAAKAGNSIYT 190

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RFV+LCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS I+ MD+
Sbjct: 191 RFVALCGGENGVVPENVLPLTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSGIVNMDE 250

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMI +LHRPDVLPV DL VR+GV+ L G++ LP PS ME+
Sbjct: 251 KSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQMLNGMEDLPRPSKMEQ 310

Query: 244 LCQKWKPYSSVASCYMYKFMDAK 266
           LC+KW+PY SVAS Y+++ +++K
Sbjct: 311 LCEKWRPYRSVASWYLWRLIESK 333


>AT1G75230.2 | Symbols:  | DNA glycosylase superfamily protein |
           chr1:28234444-28235628 FORWARD LENGTH=394
          Length = 394

 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 115/203 (56%), Positives = 151/203 (74%), Gaps = 2/203 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+EAAL+HLR+ DPLLA+ ID  PPP F  +   TPF +L +SI+ QQL+ KA ++I +
Sbjct: 133 GELEAALHHLRSVDPLLASLIDIHPPPTF--ETFQTPFLALIRSILYQQLAAKAGNSIYT 190

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RFV+LCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS I+ MD+
Sbjct: 191 RFVALCGGENGVVPENVLPLTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSGIVNMDE 250

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMI +LHRPDVLPV DL VR+GV+ L G++ LP PS ME+
Sbjct: 251 KSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQMLNGMEDLPRPSKMEQ 310

Query: 244 LCQKWKPYSSVASCYMYKFMDAK 266
           LC+KW+PY SVAS Y+++ +++K
Sbjct: 311 LCEKWRPYRSVASWYLWRLIESK 333


>AT1G19480.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr1:6744520-6746144 FORWARD LENGTH=382
          Length = 382

 Score =  238 bits (606), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 146/203 (71%), Gaps = 2/203 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+E A+++LR ADPLLA  ID  PPP F +    TPF +L ++I+ QQL+ KA ++I +
Sbjct: 137 GELETAIHYLRNADPLLAALIDVHPPPTFES--FKTPFLALIRNILYQQLAMKAGNSIYT 194

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RFVSLCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS IL MD+
Sbjct: 195 RFVSLCGGENLVVPETVLSLNPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAILNMDE 254

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMI +LHRPDVLPV DL VR+GV+ LYGL  LP PS ME+
Sbjct: 255 KSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQLLYGLDDLPRPSQMEQ 314

Query: 244 LCQKWKPYSSVASCYMYKFMDAK 266
            C KW+PY SV S YM++ ++AK
Sbjct: 315 HCAKWRPYRSVGSWYMWRLIEAK 337


>AT1G19480.2 | Symbols:  | DNA glycosylase superfamily protein |
           chr1:6744520-6745653 FORWARD LENGTH=377
          Length = 377

 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 146/203 (71%), Gaps = 2/203 (0%)

Query: 64  GEIEAALNHLRAADPLLANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIES 123
           GE+E A+++LR ADPLLA  ID  PPP F +    TPF +L ++I+ QQL+ KA ++I +
Sbjct: 137 GELETAIHYLRNADPLLAALIDVHPPPTFES--FKTPFLALIRNILYQQLAMKAGNSIYT 194

Query: 124 RFVSLCGGRXXXXXXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDD 183
           RFVSLCGG               QLRQ+G+SG KA+YLHDLA KY +GILSDS IL MD+
Sbjct: 195 RFVSLCGGENLVVPETVLSLNPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAILNMDE 254

Query: 184 ETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMER 243
           ++L   LT+V GIG WSVHMFMI +LHRPDVLPV DL VR+GV+ LYGL  LP PS ME+
Sbjct: 255 KSLFTMLTMVNGIGSWSVHMFMINSLHRPDVLPVNDLGVRKGVQLLYGLDDLPRPSQMEQ 314

Query: 244 LCQKWKPYSSVASCYMYKFMDAK 266
            C KW+PY SV S YM++ ++AK
Sbjct: 315 HCAKWRPYRSVGSWYMWRLIEAK 337


>AT3G50880.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:18913509-18914330 FORWARD LENGTH=273
          Length = 273

 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/250 (48%), Positives = 154/250 (61%), Gaps = 15/250 (6%)

Query: 19  SSSKISFRARKIRRTPLITNKXXXXXXXXXXXXXXXXXXXXXXATGEIEAALNHLRAADP 78
           SSS+I FR RKIR+                                 ++ AL HL+++D 
Sbjct: 34  SSSRIRFRPRKIRKV-----------SSDPSPRIIITASPPLSTKSTVDIALRHLQSSDE 82

Query: 79  LLANCIDSL-PPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIESRFVSLC-GGRXXXX 136
           LL   I +   PP F  D   TPF SL +SI+ QQL+ KAA  I  RF+SL  GG     
Sbjct: 83  LLGALITTHNDPPLF--DSSNTPFLSLARSILYQQLATKAAKCIYDRFISLFNGGEAGVV 140

Query: 137 XXXXXXXXXXQLRQVGISGPKATYLHDLATKYIDGILSDSTILQMDDETLHEKLTLVKGI 196
                      LR++G+SG KA+YLHDLA KY +G+LSD  IL+M DE L ++LTLVKGI
Sbjct: 141 PESVISLSAVDLRKIGVSGRKASYLHDLADKYNNGVLSDELILKMSDEELIDRLTLVKGI 200

Query: 197 GPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSLMERLCQKWKPYSSVAS 256
           G W+VHMFMIF+LHRPDVLPVGDL VR+GV+ LYGLK LP P  ME+LC+KW+PY SV S
Sbjct: 201 GVWTVHMFMIFSLHRPDVLPVGDLGVRKGVKDLYGLKNLPGPLQMEQLCEKWRPYRSVGS 260

Query: 257 CYMYKFMDAK 266
            YM++ ++++
Sbjct: 261 WYMWRLIESR 270