Miyakogusa Predicted Gene

Lj2g3v1757060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1757060.1 Non Chatacterized Hit- tr|D7SPC8|D7SPC8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,32.37,9e-19,seg,NULL; coiled-coil,NULL,CUFF.37974.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36600.1 | Symbols:  | Late embryogenesis abundant (LEA) prot...    50   2e-06

>AT4G36600.1 | Symbols:  | Late embryogenesis abundant (LEA) protein
           | chr4:17263666-17264968 FORWARD LENGTH=353
          Length = 353

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 106/271 (39%), Gaps = 66/271 (24%)

Query: 8   ASDYASQKATDAREAVSEAVSYGREKASKA----YDDSDEVIRMPTDK------------ 51
           A D+AS KA  A ++   A  Y  +KA  A    YD + +   M  DK            
Sbjct: 106 AKDFASDKAGSAYDSAHNAKHYAYDKAGDAKDMAYDKTGQAKYMAYDKAGSAYEKAGQAK 165

Query: 52  ----NKINDAKDM----VGDTYEDAKQKMYMASDKASTM---ARNAKD----NMAEKASN 96
               +K   AKDM    VG  Y+ A Q   MA DKA +    A  AKD      A     
Sbjct: 166 DMAYDKAGQAKDMAYDKVGSAYDKAGQAKDMAYDKAGSASEKAGQAKDFAYDKAAHAKDA 225

Query: 97  VYEQGKEKINTASDMASEKFHDANDCAQG---RMKS--------APPKIQSVKSKGKRIV 145
            Y + ++ I  A+D + E    A D A G   R K         A  K   V+    R V
Sbjct: 226 AYNKAEDVIKMATDTSGE----AKDSAYGTYERFKEGSKNAKDIASDKAHDVRETAGRAV 281

Query: 146 DYGRDKAFAAYDETKERVNDAKDKMGEAMGLDRDKIAETFEQAKDEVGERYMSAKNTMSX 205
           DY +DKA           NDA +   EA G         F++A  +VGERY +AK++MS 
Sbjct: 282 DYAKDKA-----------NDAYESGSEAAGR--------FDEAMHKVGERYGAAKDSMSE 322

Query: 206 XXXXXXXXXXXXXXXXXXXFGEMLRN-TPEL 235
                              +G  +R+ + EL
Sbjct: 323 NTKEAYESAKEKASDAAGEYGSYMRDRSAEL 353