Miyakogusa Predicted Gene

Lj2g3v1728800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1728800.1 Non Chatacterized Hit- tr|I3T8P7|I3T8P7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.57,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Protein of unknown function
DUF778; DUF778,Prote,CUFF.37731.1
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51040.3 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   246   1e-65
AT3G51040.2 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   246   1e-65
AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952281-189530...   246   1e-65
AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF77...   207   4e-54

>AT3G51040.3 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/231 (52%), Positives = 148/231 (64%), Gaps = 2/231 (0%)

Query: 2   EPELDPEQVEMMEGGFSRTMQIDPRRARFPCSVVWSPLPVISWFIPFIGHIGICREDGVI 61
           E   D E   M+  G S  M+IDP+R RFPC +VW+PLP ISW +PFIGH+GICREDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 60

Query: 62  LDFAGPNFVCVDNFAFGAATRYLQITKEKCCIPLGQSTCKDEALCTYMPDETGGELKTWD 121
           LDFAGPNFVCVDNFAFGA +RY+QI KE        S   +        +++  +  TWD
Sbjct: 61  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 120

Query: 122 DALRKSTQEFQHRSYNLFTCNCHSFVANNLNRMGFLSRGWNVVNLAIFILFNGRWVSTAS 181
           DALRKSTQE+QH SYN+ TCNCHSFVANNLNR+   S GWNVVNLA  +LF GRWV+  +
Sbjct: 121 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 180

Query: 182 MXXXXXXXXXXXXXXXXXXXXXXXKFWALFASVLIGWFLLGTYCFKGLIQL 232
           +                          ++   +L GWF++GTYCFK LIQL
Sbjct: 181 IVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL 231


>AT3G51040.2 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/231 (52%), Positives = 148/231 (64%), Gaps = 2/231 (0%)

Query: 2   EPELDPEQVEMMEGGFSRTMQIDPRRARFPCSVVWSPLPVISWFIPFIGHIGICREDGVI 61
           E   D E   M+  G S  M+IDP+R RFPC +VW+PLP ISW +PFIGH+GICREDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 60

Query: 62  LDFAGPNFVCVDNFAFGAATRYLQITKEKCCIPLGQSTCKDEALCTYMPDETGGELKTWD 121
           LDFAGPNFVCVDNFAFGA +RY+QI KE        S   +        +++  +  TWD
Sbjct: 61  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 120

Query: 122 DALRKSTQEFQHRSYNLFTCNCHSFVANNLNRMGFLSRGWNVVNLAIFILFNGRWVSTAS 181
           DALRKSTQE+QH SYN+ TCNCHSFVANNLNR+   S GWNVVNLA  +LF GRWV+  +
Sbjct: 121 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 180

Query: 182 MXXXXXXXXXXXXXXXXXXXXXXXKFWALFASVLIGWFLLGTYCFKGLIQL 232
           +                          ++   +L GWF++GTYCFK LIQL
Sbjct: 181 IVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL 231


>AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060
           REVERSE LENGTH=231
          Length = 231

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/231 (52%), Positives = 148/231 (64%), Gaps = 2/231 (0%)

Query: 2   EPELDPEQVEMMEGGFSRTMQIDPRRARFPCSVVWSPLPVISWFIPFIGHIGICREDGVI 61
           E   D E   M+  G S  M+IDP+R RFPC +VW+PLP ISW +PFIGH+GICREDGVI
Sbjct: 3   ETATDSEHRMMI--GLSDPMKIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVI 60

Query: 62  LDFAGPNFVCVDNFAFGAATRYLQITKEKCCIPLGQSTCKDEALCTYMPDETGGELKTWD 121
           LDFAGPNFVCVDNFAFGA +RY+QI KE        S   +        +++  +  TWD
Sbjct: 61  LDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWD 120

Query: 122 DALRKSTQEFQHRSYNLFTCNCHSFVANNLNRMGFLSRGWNVVNLAIFILFNGRWVSTAS 181
           DALRKSTQE+QH SYN+ TCNCHSFVANNLNR+   S GWNVVNLA  +LF GRWV+  +
Sbjct: 121 DALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTA 180

Query: 182 MXXXXXXXXXXXXXXXXXXXXXXXKFWALFASVLIGWFLLGTYCFKGLIQL 232
           +                          ++   +L GWF++GTYCFK LIQL
Sbjct: 181 IVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQL 231


>AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF778)
           | chr2:11105741-11106607 REVERSE LENGTH=250
          Length = 250

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 143/229 (62%), Gaps = 10/229 (4%)

Query: 7   PEQVEMMEGGFSRTMQIDPRRARFPCSVVWSPLPVISWFIPFIGHIGICREDGVILDFAG 66
           P  +E  E       +ID ++++FPC +VW+PLPV+SW  PFIGHIG+CREDGVILDFAG
Sbjct: 28  PSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAG 87

Query: 67  PNFVCVDNFAFGAATRYLQITKEKCCIP--LGQSTCKDEALCTYMPDETG-GELKTWDDA 123
            NF+ VD+FAFG   RYLQ+ + KCC+P  +G  TCK      Y    T  G  +TWD+A
Sbjct: 88  SNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCK------YGFKHTDFGTARTWDNA 141

Query: 124 LRKSTQEFQHRSYNLFTCNCHSFVANNLNRMGF-LSRGWNVVNLAIFILFNGRWVSTASM 182
           L  ST+ F+H++YN+FTCNCHSFVAN LNR+ +  S  WN+VN+AI ++  G+W++ +S+
Sbjct: 142 LSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILLMIKGKWINGSSV 201

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXKFWALFASVLIGWFLLGTYCFKGLIQ 231
                                     + F+ +L  WF++ TYCFK +I 
Sbjct: 202 VRSFLPCAVVTSLGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFKNIIT 250