Miyakogusa Predicted Gene
- Lj2g3v1717610.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1717610.1 tr|D7LYV7|D7LYV7_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_663183
PE,34.59,1e-17,FBOX,F-box domain, cyclin-like; F-box-like,NULL;
LRR_6,NULL; N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE ,CUFF.37704.1
(339 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 195 4e-50
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 172 4e-43
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 171 7e-43
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 164 8e-41
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 143 2e-34
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 140 9e-34
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 139 4e-33
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 110 1e-24
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 103 2e-22
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 103 2e-22
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 103 2e-22
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 103 2e-22
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 103 2e-22
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 101 6e-22
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 85 7e-17
AT3G48880.2 | Symbols: | RNI-like superfamily protein | chr3:18... 66 4e-11
AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:18... 66 4e-11
AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 59 5e-09
AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 ... 58 9e-09
AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 ... 57 2e-08
AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:20... 53 3e-07
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 52 8e-07
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 50 3e-06
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 49 7e-06
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 157/257 (61%), Gaps = 14/257 (5%)
Query: 38 SYSRPAKEAEGESTNGTPNWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLM 97
S S PA GESTN W +LP ELT+ IL RL EIL +A +VC W + KDP M
Sbjct: 4 SSSPPAAMEVGESTN----WTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSM 59
Query: 98 WRTIDMIPHAYHSIS----KLVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSAS 153
WR IDM H + L ++CR+AV+RS G L +I I F + DLL YIA +S
Sbjct: 60 WRKIDM--HNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHR--SS 115
Query: 154 QLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNT 213
LRSLRL CS I+D G EAV KLP LEE+++S+ + S +SL +G CC +KTLK N
Sbjct: 116 NLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLNK 174
Query: 214 VRDIFAYDEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLS 273
D+ A +IA+TMP+L HL++ +S+ GL AILD C LE+LDL+ C ++L
Sbjct: 175 -HPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLV 233
Query: 274 GSLRKRLCEQVKEIRLP 290
G L+KR E VK +R P
Sbjct: 234 GDLQKRCFESVKVVRHP 250
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 154/254 (60%), Gaps = 25/254 (9%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIPHAYHSISKLV 115
NW+ LP ELTT+IL RLS+ +IL +A +VC W I KDP MWR I+ ++ V
Sbjct: 45 NWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRDCLMYNFD-FV 103
Query: 116 MICRNAVERSCGHLKEISI-ERFASDDLLKYIADSDSASQLRSLRLPHC-SAISDVGLKE 173
+CR+ V+ S G L EI++ E F SD LL YI D + LRSL L C ++ +G+
Sbjct: 104 SMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRN----LRSLGLGMCFPRVTKLGVVN 159
Query: 174 AVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAY------------- 220
A+ K+P+LE ++++ + + D L+AIG CP LKTLK N++ ++
Sbjct: 160 AIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMG 218
Query: 221 ----DEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSL 276
D+ A +IA++MP+L HL++ +++N GL AILDGCP LE+LD++ C + L G+L
Sbjct: 219 PLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNL 278
Query: 277 RKRLCEQVKEIRLP 290
KR E +KE+R P
Sbjct: 279 EKRCLEMIKELRRP 292
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 153/249 (61%), Gaps = 18/249 (7%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIPHAYHSISKLV 115
NW+ LP ELTT+IL RLSV +IL +A ++C W I KDP MWR I++ +
Sbjct: 39 NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCLMYEFDFES 98
Query: 116 MICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAV 175
M CR+ V+ S G L EI+IE F SD LL YI D + L+SL + +++ G+ +
Sbjct: 99 M-CRHIVDLSQGGLLEINIEHFVSDSLLSYIV--DRSCNLKSLGISIYEPMTNKGVMNGI 155
Query: 176 KKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAYD--EVAY-------- 225
+KLP+LE + I +++ D L+AIG CP LKTLK N++ A+D +V Y
Sbjct: 156 EKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDD 214
Query: 226 ---SIAKTMPELCHLEISRIKISNKGLVAILDGCPQL-EYLDLKSCLGLDLSGSLRKRLC 281
+IA++MP+L HL++ ++N GL AILDGCP L E+LD++ C ++L G+L KR
Sbjct: 215 DALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCM 274
Query: 282 EQVKEIRLP 290
+++KE+R P
Sbjct: 275 KRIKELRRP 283
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 140/229 (61%), Gaps = 8/229 (3%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDM--IPHAYHSISK 113
NW +LP ELT++IL RL EIL +A +VC W + +DP MWR ID+ + +S+
Sbjct: 20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79
Query: 114 LVMI---CRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVG 170
+I C AV+ S G L EI+I+ + L YIAD +S LR L + C+ + G
Sbjct: 80 FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADR--SSNLRRLGVVDCAPVLSRG 137
Query: 171 LKEAVKKLPMLEEIDISF-TNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIAK 229
+ EA KLP+LEE+DI++ +++ + L+ +G CP L+TLK N D+ D+VA +IA+
Sbjct: 138 VVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKCCDKVALAIAE 197
Query: 230 TMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRK 278
TMP L HL++ R +S GL AIL+GCP L+ L L CL +++ G + K
Sbjct: 198 TMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 126/191 (65%), Gaps = 16/191 (8%)
Query: 117 ICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAVK 176
ICRNAV+RS G L EI+I F SD LL YIA+ +S LRSLRL CS I+D G +AV
Sbjct: 18 ICRNAVDRSEGGLLEINIGDFGSDSLLTYIAER--SSNLRSLRL-MCSEITDDGFVQAVV 74
Query: 177 KLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIA--KTMPEL 234
KLPMLEE+++S +LS +S++ GL CP LKTL N + + + D+ +IA ++MP+L
Sbjct: 75 KLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKL 134
Query: 235 CHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR------ 288
HL++ K++ GL AILDGCP LE+LDL+ C ++L G+L KR E++K++R
Sbjct: 135 RHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC--INLVGNLEKRCFEKIKDLRRHNDST 192
Query: 289 ---LPFALEYY 296
PF+ E Y
Sbjct: 193 SADYPFSFETY 203
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIP-HAYHSISKL 114
NW +LP +L ++IL RLS EIL +A +VC W + KDPL+WR IDM + I +
Sbjct: 26 NWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYAM 85
Query: 115 VMICRNAVERSCGHLKEISIE--RFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLK 172
CR+ V+ S G L E +I+ RF + LL Y+A+ +S LR LR+ I+ VG+
Sbjct: 86 EACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER--SSNLRRLRVKG-GQITSVGIF 142
Query: 173 EAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTV-RDIFAYDEVAYSIAKTM 231
EA+ KLP+LEE+++ + ++ ++ + IG CP LKTLK + D A +IA TM
Sbjct: 143 EAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLVGFWSHLNESDNDALAIADTM 202
Query: 232 PELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIRLPF 291
P L HL++ ++N GL AILDGCP LE LDL+ C ++L G L ++ E++K+ R P
Sbjct: 203 PGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDFRCPN 262
Query: 292 -ALEYYN 297
L+ YN
Sbjct: 263 DVLDDYN 269
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 116 MICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAV 175
M+C +AV S G EI+IE F +D LL YIAD +S LR L L C I+ +GL
Sbjct: 28 MMC-HAVALSQGGCVEINIEHFGTDSLLTYIADR--SSNLRHLGLAKCDQITGMGLFTEA 84
Query: 176 KKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVR---DIFAYDEVAYSIAKTMP 232
KLP+LE++++S+ + +LEAIG C LKTLK N F YD A IAK MP
Sbjct: 85 MKLPLLEDLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMP 144
Query: 233 ELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIRLP 290
EL L++ ++S+ GL AI DGCP LE+LDL+ C ++L G L KR E++K++R P
Sbjct: 145 ELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDLRRP 202
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 14/156 (8%)
Query: 152 ASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKY 211
+S LRSLRL CS I+D G +AV KLPMLEE+++S +LS +S++ GL CP LKTL
Sbjct: 13 SSNLRSLRL-MCSEITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLML 71
Query: 212 NTVRDIFAYDEVAYSIA--KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLG 269
N + + + D+ +IA ++MP+L HL++ K++ GL AILDGCP LE+LDL+ C
Sbjct: 72 NRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQC-- 129
Query: 270 LDLSGSLRKRLCEQVKEIR---------LPFALEYY 296
++L G+L KR E++K++R PF+ E Y
Sbjct: 130 INLVGNLEKRCFEKIKDLRRHNDSTSADYPFSFETY 165
>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 24/293 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID--MIPHAYHSISK 113
+W +L + I L ++E+L +VC W P W+ ID + + +H
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 114 LVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKE 173
L + + RS G L+++S+ +D + +IA A L++L++P S +++ G+
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQH--AGSLKTLKVPR-SGLTNSGVVN 125
Query: 174 AVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT----VRDIFAYDEVAYSIA 228
+KL L +D+S+ + ++++AIG C L+ N V + ++D+ AY+IA
Sbjct: 126 VAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIA 185
Query: 229 KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR 288
TMP+L LEI+ ++S +G++ IL C LE+L+L+ C + L K +K +
Sbjct: 186 NTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK-VL 244
Query: 289 LPFALEYYN--------SDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFD 333
P + +Y+ D + G ++ A WE ED + EF+ F+
Sbjct: 245 GPRVIGFYDMINDWEDCCSDYFSDGSDYLA---WEFFEDGVMG--EFYEDEFE 292
>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 24/293 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID--MIPHAYHSISK 113
+W +L + I L ++E+L +VC W P W+ ID + + +H
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 114 LVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKE 173
L + + RS G L+++S+ +D + +IA A L++L++P S +++ G+
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQH--AGSLKTLKVPR-SGLTNSGVVN 125
Query: 174 AVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT----VRDIFAYDEVAYSIA 228
+KL L +D+S+ + ++++AIG C L+ N V + ++D+ AY+IA
Sbjct: 126 VAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIA 185
Query: 229 KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR 288
TMP+L LEI+ ++S +G++ IL C LE+L+L+ C + L K +K +
Sbjct: 186 NTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK-VL 244
Query: 289 LPFALEYYN--------SDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFD 333
P + +Y+ D + G ++ A WE ED + EF+ F+
Sbjct: 245 GPRVIGFYDMINDWEDCCSDYFSDGSDYLA---WEFFEDGVMG--EFYEDEFE 292
>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 24/293 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID--MIPHAYHSISK 113
+W +L + I L ++E+L +VC W P W+ ID + + +H
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 114 LVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKE 173
L + + RS G L+++S+ +D + +IA A L++L++P S +++ G+
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQH--AGSLKTLKVPR-SGLTNSGVVN 125
Query: 174 AVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT----VRDIFAYDEVAYSIA 228
+KL L +D+S+ + ++++AIG C L+ N V + ++D+ AY+IA
Sbjct: 126 VAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIA 185
Query: 229 KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR 288
TMP+L LEI+ ++S +G++ IL C LE+L+L+ C + L K +K +
Sbjct: 186 NTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK-VL 244
Query: 289 LPFALEYYN--------SDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFD 333
P + +Y+ D + G ++ A WE ED + EF+ F+
Sbjct: 245 GPRVIGFYDMINDWEDCCSDYFSDGSDYLA---WEFFEDGVMG--EFYEDEFE 292
>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 24/293 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID--MIPHAYHSISK 113
+W +L + I L ++E+L +VC W P W+ ID + + +H
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 114 LVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKE 173
L + + RS G L+++S+ +D + +IA A L++L++P S +++ G+
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQH--AGSLKTLKVPR-SGLTNSGVVN 125
Query: 174 AVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT----VRDIFAYDEVAYSIA 228
+KL L +D+S+ + ++++AIG C L+ N V + ++D+ AY+IA
Sbjct: 126 VAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIA 185
Query: 229 KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR 288
TMP+L LEI+ ++S +G++ IL C LE+L+L+ C + L K +K +
Sbjct: 186 NTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK-VL 244
Query: 289 LPFALEYYN--------SDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFD 333
P + +Y+ D + G ++ A WE ED + EF+ F+
Sbjct: 245 GPRVIGFYDMINDWEDCCSDYFSDGSDYLA---WEFFEDGVMG--EFYEDEFE 292
>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 24/293 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID--MIPHAYHSISK 113
+W +L + I L ++E+L +VC W P W+ ID + + +H
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSDH 68
Query: 114 LVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKE 173
L + + RS G L+++S+ +D + +IA A L++L++P S +++ G+
Sbjct: 69 LDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQH--AGSLKTLKVPR-SGLTNSGVVN 125
Query: 174 AVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT----VRDIFAYDEVAYSIA 228
+KL L +D+S+ + ++++AIG C L+ N V + ++D+ AY+IA
Sbjct: 126 VAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIA 185
Query: 229 KTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSGSLRKRLCEQVKEIR 288
TMP+L LEI+ ++S +G++ IL C LE+L+L+ C + L K +K +
Sbjct: 186 NTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMK-VL 244
Query: 289 LPFALEYYN--------SDDSYDIGLEFDANADWESEEDRISQFIEFFTVRFD 333
P + +Y+ D + G ++ A WE ED + EF+ F+
Sbjct: 245 GPRVIGFYDMINDWEDCCSDYFSDGSDYLA---WEFFEDGVMG--EFYEDEFE 292
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 134/266 (50%), Gaps = 36/266 (13%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDM------IPHAYH 109
+W L E+ NI+ RL+++E+ V W ++ +DP +W D+ P + H
Sbjct: 7 DWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTH 66
Query: 110 SIS-----KLVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCS 164
S K+ ++ R+ V+ S G L +I + R SD L Y AD L+ L +
Sbjct: 67 LWSPEFEQKVDLMLRSVVDWSEGGLTKIRV-RHCSDHALSYAADR--CPNLQVLAIRSSP 123
Query: 165 AISDVGLKEAVKKLPMLEEIDISFTN-LSKDSLEAIGLCCPMLKTLKYN----TVRDIFA 219
++D + + + L+E+DIS+ + +S D+L IG CP L+ LK N + R I +
Sbjct: 124 NVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGS 183
Query: 220 Y------------DEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSC 267
D A +I K M L HLEI ++S KGL +I +GCP+LEYLDL C
Sbjct: 184 VPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC 243
Query: 268 LGL---DLSGSLRKRLCEQVKEIRLP 290
+ L D++ ++ + + +KE++ P
Sbjct: 244 VHLSSRDITSNVSR--LKWLKEVKKP 267
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 121/261 (46%), Gaps = 36/261 (13%)
Query: 46 AEGESTNGT---PNWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTID 102
EG+ G+ P+W +L RE +I RLS E+ + V W + DP + D
Sbjct: 6 GEGKVEMGSGLYPDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFD 65
Query: 103 M------IPHAYHSIS-----KLVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDS 151
+ P + + + K+ R+ V+RS G L EI I R ++ L Y A+
Sbjct: 66 LETRFLSFPESINWWTPEFEDKVDSFLRSVVDRSEGGLTEIRI-RHCTERSLSYAAER-- 122
Query: 152 ASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLK 210
L L + +C ++D +++ P L E+DIS++ ++ +SL +G C LK LK
Sbjct: 123 CPNLEVLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILK 182
Query: 211 YN-------TVRDIFA----------YDEV-AYSIAKTMPELCHLEISRIKISNKGLVAI 252
N ++ I A Y + A I K M +L HLEI ++ +GL ++
Sbjct: 183 RNLLPRLGPSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSV 242
Query: 253 LDGCPQLEYLDLKSCLGLDLS 273
GC LEY+DL+ C+ L S
Sbjct: 243 CKGCSNLEYMDLRGCISLTRS 263
>AT3G48880.2 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 57 WLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMI------------ 104
W +L ++ I Q+ SV E+ + VC W + DP++W+T+D+
Sbjct: 13 WEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSSFIKIPLE 72
Query: 105 PHAY---HSISKLVMICRNAVERSCGHLKEI--SIERFASDDLLKYIADSDSASQLRSLR 159
P+ Y S L I + ++ S G + + F SDD L Y A + LR +
Sbjct: 73 PYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA--ERCPGLRRVV 130
Query: 160 LPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFA 219
LP + I G+ +A++ LE + + L I C K LK ++F
Sbjct: 131 LPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEVF- 189
Query: 220 YDEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSG 274
A ++ +P + L I I + L+ ILDG P LE L++ ++ SG
Sbjct: 190 ---FANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSG 241
>AT3G48880.1 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 57 WLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMI------------ 104
W +L ++ I Q+ SV E+ + VC W + DP++W+T+D+
Sbjct: 13 WEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSSFIKIPLE 72
Query: 105 PHAY---HSISKLVMICRNAVERSCGHLKEI--SIERFASDDLLKYIADSDSASQLRSLR 159
P+ Y S L I + ++ S G + + F SDD L Y A + LR +
Sbjct: 73 PYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA--ERCPGLRRVV 130
Query: 160 LPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFA 219
LP + I G+ +A++ LE + + L I C K LK ++F
Sbjct: 131 LPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEVF- 189
Query: 220 YDEVAYSIAKTMPELCHLEISRIKISNKGLVAILDGCPQLEYLDLKSCLGLDLSG 274
A ++ +P + L I I + L+ ILDG P LE L++ ++ SG
Sbjct: 190 ---FANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSG 241
>AT4G03635.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNI-like superfamily protein (TAIR:AT4G05470.1); Has
118 Blast hits to 113 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:1612035-1612613 FORWARD LENGTH=88
Length = 88
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 137 FASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDIS--FTNLSKD 194
F +D L YIA +S LR LRL C ++ G AV KL LEE+DIS +T L
Sbjct: 4 FGNDSLYSYIAQR--SSNLRCLRLAMCYPLTGNGFVSAVMKLSFLEELDISQGYTQL--- 58
Query: 195 SLEAIGLCCPMLKTLKYN 212
L+AIG CP+LKT K N
Sbjct: 59 DLKAIGHSCPLLKTFKLN 76
>AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 |
chr3:22306806-22310596 REVERSE LENGTH=928
Length = 928
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 56 NWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIPHAYHSISKLV 115
NW LP + ++ RL+ + S + C W S+ +W ++D+ H + L
Sbjct: 39 NWTSLPYDTVFHLFTRLNYRD-RASLASTCRTWRSLGASSFLWSSLDLRAHKF----DLS 93
Query: 116 MICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAV 175
M A C L++I S D + ++ A L + +C I+D L
Sbjct: 94 MAASLATR--CVDLQKIRFRGVDSADAIIHL----KARSLLEISGDYCRKITDATLSMIA 147
Query: 176 KKLPMLEEIDIS---FTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIAKTMP 232
+ LE + + ++ D++ I CCP LK L+ + +RD+ E S+AK P
Sbjct: 148 ARHEALESLQLGPDFCERITSDAIRVIAFCCPKLKKLRVSGMRDV--SSEAIESLAKHCP 205
Query: 233 ELCHL 237
+L L
Sbjct: 206 QLSDL 210
>AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 |
chr2:18511719-18515762 REVERSE LENGTH=930
Length = 930
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 52 NGTPNWLKLPRELTTNILQRLSVEEILMSASQVCSLWWSIYKDPLMWRTIDMIPHAYHSI 111
+G +W+ LP + + L+ + S + C W + +W ++D+ PH + +
Sbjct: 42 HGFVDWISLPYDTVLQLFTCLNYRD-RASLASTCKTWRCLGASSCLWTSLDLRPHKFDAS 100
Query: 112 SKLVMICRNAVERSCGHLKEISIERFASDDLLKYIADSDSASQLRSLRLPHCSAISDVGL 171
+ R C +L + S D L ++ A L + +C I+D L
Sbjct: 101 MAASLASR------CVNLHYLRFRGVESADSLIHL----KARNLIEVSGDYCKKITDATL 150
Query: 172 KEAVKKLPMLEEIDIS---FTNLSKDSLEAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIA 228
V + LE + + ++ D+++A+ CCP LK L+ + +RD+ + E ++A
Sbjct: 151 SMIVARHEALESLQLGPDFCERITSDAIKAVAFCCPKLKKLRLSGIRDVTS--EAIEALA 208
Query: 229 KTMPELCHL 237
K P+L L
Sbjct: 209 KHCPQLNDL 217
>AT5G51380.1 | Symbols: | RNI-like superfamily protein |
chr5:20875945-20877779 FORWARD LENGTH=479
Length = 479
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 30/236 (12%)
Query: 90 SIYKDPLMWRTIDMIPHAYHSISKLVMICRNAVE-------RSCGHLKEISIERFASDDL 142
S+ + ++ + + ++ + KLV+I NA E C L+E+ + + SD+L
Sbjct: 168 SLLDNEMVDKGLRVLGRGSFDLIKLVVI--NATELGLLSLAEDCSDLQELELHK-CSDNL 224
Query: 143 LKYIADSDSASQLRSLRLP------HCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSL 196
L+ IA + LR LRL + S++SD+GL + L ++++S S D +
Sbjct: 225 LRGIA---ACENLRGLRLVGSVDGLYSSSVSDIGLTILAQGCKRLVKLELSGCEGSFDGI 281
Query: 197 EAIGLCCPMLKTLKYNTVRDIFAYDEVAYSIAKTMPELCHLEISRIKI--SNKGLVAILD 254
+AIG CC +L+ L R D+ + L L IS + S+ G +L
Sbjct: 282 KAIGQCCEVLEELSICDHR----MDDGWIAALSYFESLKTLLISSCRKIDSSPGPGKLLG 337
Query: 255 GCPQLEYLDLKSCLGLDLSGSLRK--RLCEQVKEIRLPFALEYYNSDDSYDIGLEF 308
CP LE L L+ C D G +R ++C+ V ++ + + DDS+ + F
Sbjct: 338 SCPALESLQLRRCCLNDKEG-MRALFKVCDGVTKVNIQDC--WGLDDDSFSLAKAF 390
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 138 ASDDLLKYIADSDSASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDI-SFTNLSKDSL 196
+D L+YI+ S L+ L+L C+ ISD G+ K L E+D+ D L
Sbjct: 416 VNDRGLEYIS---KCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGL 472
Query: 197 EAIGLCCPMLKTLKYNTVRDIFAY----DEVAYSIAKTMPELCHLEISRIK-ISNKGLVA 251
A+ C L L I +Y + + + L HLE+ +K I+ GL A
Sbjct: 473 AALSRGCKSLNRL-------ILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAA 525
Query: 252 ILDGCPQLEYLDLKSCLGLDLSG 274
I GC +L YLD+K C +D SG
Sbjct: 526 IASGCKKLGYLDVKLCENIDDSG 548
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 155 LRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFT-NLSKDSLEAIGLCCPMLKTLKYNT 213
LR L L +C I+D GL + L +L+ +D+S+ LS L A+ C L+ L
Sbjct: 100 LRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAG 159
Query: 214 VRDIFAYDEVAYSIAKTMPELCHLEISR-IKISNKGLVAILDGCPQLEYLDLKSCLGLDL 272
R F DE S+++ +L L + I++ GL ++ GC +++ LD+ C +
Sbjct: 160 CR--FITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGD 217
Query: 273 SG--SLRKRLCEQVKEIRLPFALEYYNSDDSYDIGLE 307
+G S+ K +K ++L D Y +G E
Sbjct: 218 AGVSSVAKACASSLKTLKLL---------DCYKVGNE 245
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 151 SASQLRSLRLPHCSAISDVGLKEAVKKLPMLEEIDISFTNLSKDSLEAIGLCCPMLKTLK 210
A L+ L L HCS++ + ++KK+ L+ I + +++ D L+AIG C LK +
Sbjct: 276 GAGYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVS 335
Query: 211 YNTVRDIFAYDEVAYSIAKTMPELCHLEISRI-KISNKGLVAILDGCPQLEYLDLKSC 267
+ + + DE S+ + +L L+I+ K+S + I + CP L L ++SC
Sbjct: 336 LS--KCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESC 391