Miyakogusa Predicted Gene
- Lj2g3v1705490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1705490.1 Non Chatacterized Hit- tr|I1JG14|I1JG14_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5264
PE=,78.67,0,RRM_1,RNA recognition motif domain; coiled-coil,NULL;
seg,NULL; RNA-binding domain, RBD,NULL; RRM,RN,CUFF.37730.1
(210 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 281 2e-76
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 5e-07
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 5e-07
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 5e-07
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 5e-07
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 2e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 2e-06
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 47 9e-06
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 129/190 (67%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Query: 22 PSDGPDFLPLEGGPARKLPVQTP-LENKGTVLYVGRIPHGFYEKEIEGYFGQFGTIKRLR 80
P DFLPLEGGPARK PV TP L+NK TVLY+GRIPHGFYE EIE +F QFGT+KR+R
Sbjct: 31 PKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVR 90
Query: 81 IARNKKTGKSRHFGFIEFESAEVAKIVADTMHNYLLFAHLLQVHVMPPEQVHPNLWRGFN 140
+ARNKKTGKS+HFGFI+FE EVA+I A M++YLL H+L+VHV+ PE V PNLWRGF
Sbjct: 91 VARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFK 150
Query: 141 YRSKPLDSVEIQREQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQ 200
KP+DSV+I+R Q +KERTLEEHRK+++KIV +D+KRRK+IE AGI+YECPE+VGN Q
Sbjct: 151 CNFKPVDSVQIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQ 210
Query: 201 PAPKKLKFED 210
P PK++KF +
Sbjct: 211 PVPKRIKFSE 220
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAE-VAKIVADT 110
++VG +P E+E + YF QFGTI + + + T + R FGFI F+S + V +++ T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 111 MHNYLLFAHLLQVHVMPPEQVHP 133
H L L++V P+++ P
Sbjct: 172 FHE--LNGKLVEVKRAVPKEISP 192
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAE-VAKIVADT 110
++VG +P E+E + YF QFGTI + + + T + R FGFI F+S + V +++ T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 111 MHNYLLFAHLLQVHVMPPEQVHP 133
H L L++V P+++ P
Sbjct: 172 FHE--LNGKLVEVKRAVPKEISP 192
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAE-VAKIVADT 110
++VG +P E+E + YF QFGTI + + + T + R FGFI F+S + V +++ T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 111 MHNYLLFAHLLQVHVMPPEQVHP 133
H L L++V P+++ P
Sbjct: 172 FHE--LNGKLVEVKRAVPKEISP 192
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAE-VAKIVADT 110
++VG +P E+E + YF QFGTI + + + T + R FGFI F+S + V +++ T
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 111 MHNYLLFAHLLQVHVMPPEQVHP 133
H L L++V P+++ P
Sbjct: 172 FHE--LNGKLVEVKRAVPKEISP 192
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 24 DGPDFLPLEGGPARKL-----PVQTPLENKGTV------LYVGRIPHGFYEKEIEGYFGQ 72
DG D P + G R L + P + V L+VGR+ H E + +
Sbjct: 27 DGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSK 86
Query: 73 FGTIKRLRIARNKKTGKSRHFGFIEFES-AEVAKIVADTMHNYL 115
+G IK LR+ R+ TG SR +GF+E+E+ E+ + D H+ +
Sbjct: 87 YGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLI 130
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVADTM 111
+YVG IP E ++ F Q+G I + + R+K TGKS+ F F+ +E + D +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 112 HNYLLFAHLLQVHVMPPEQVH 132
+ L+ ++V + H
Sbjct: 98 NGALVLGRTIKVDHCGAYKKH 118
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 52 LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVA 104
++VG IP + E + +F QFG +K +I R+ TG+SR FGF+ +ES ++
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 50 TVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESAEVAKIVAD 109
LYVG + E + F FG IK ++ ++ K R FGF+ F E A D
Sbjct: 13 NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 110 TMHNYLLFAHLLQVHVMPPEQV---------HPNLWRGFN-YRSKPLDSVEIQREQHDKE 159
M L+ +L V+ PE++ HP LW + + + EI + Q + +
Sbjct: 73 NMDGAELYGRVLTVNYALPEKIKGGEQGWAAHP-LWADADTWFERQQQEKEILKMQAENK 131
Query: 160 RTLEEHRKLVEKIVSRDKKRRKKIEE 185
+E +L K ++ D R+ ++EE
Sbjct: 132 AAMETAEELHRKKLAED--RQGEMEE 155