Miyakogusa Predicted Gene

Lj2g3v1705480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1705480.1 Non Chatacterized Hit- tr|D2V2Z9|D2V2Z9_NAEGR
Putative uncharacterized protein OS=Naegleria gruberi
,27.6,0.0000000002, ,NODE_41717_length_1198_cov_68.346413.path1.1
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   386   e-107

>AT4G16060.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           chloroplast stroma; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to
           42 proteins in 16 species: Archae - 0; Bacteria - 2;
           Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
           Eukaryotes - 7 (source: NCBI BLink). |
           chr4:9094424-9096147 FORWARD LENGTH=289
          Length = 289

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/234 (78%), Positives = 203/234 (86%)

Query: 54  VTELIDESHFSSLLSPDGYISICGFGSLLSERSARSTFPDLLNFRTARLNHFRRVFAHVA 113
           V EL DES F  LLS D  ISI GFGSLLSERSARSTFPDL NFR A+L  FRRVFAH A
Sbjct: 56  VMELEDESDFEKLLSSDNRISITGFGSLLSERSARSTFPDLENFRIAKLQGFRRVFAHSA 115

Query: 114 PVFFERGIAKPETMEISSLSVEPCDGETLVVTVFEIGKSEIPDYIKREVEFRFLAVVPET 173
           P+FFERGIA PET EISSLSVEPC+GE+LVVTVFEI  SEIP +I RE+EFRFLAVVPET
Sbjct: 116 PIFFERGIANPETKEISSLSVEPCEGESLVVTVFEIKSSEIPAFIGRELEFRFLAVVPET 175

Query: 174 LDGKPFEFPAVLCARYSDEEFFKIRCKGDKEIYFQQYGRWNIDKIWRDDVLPCRVYLRHC 233
           L+GKP+   AVLC RYSDEEFF+IRCKG+K IYFQ YGR+ IDKIWRDD+LPCR+YLRHC
Sbjct: 176 LEGKPYTNSAVLCGRYSDEEFFQIRCKGNKGIYFQHYGRFKIDKIWRDDILPCRLYLRHC 235

Query: 234 VLAAKNLDDTAYNNFLDHTYLADRKTTIREYLATTGSGIMEEEPPKSVKYRYGG 287
           VLAAKNL D AYNNFLDHT+L DRKTTIREYL++TGSGIMEEEPP+++K RYGG
Sbjct: 236 VLAAKNLGDEAYNNFLDHTFLGDRKTTIREYLSSTGSGIMEEEPPEALKSRYGG 289