Miyakogusa Predicted Gene

Lj2g3v1705470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1705470.1 tr|Q9M4U6|Q9M4U6_SOLCI Histone H1 variant
OS=Solanum chilense PE=3 SV=1,53.57,9e-19,H15,Histone H1/H5;
Linker_histone,Histone H1/H5; no description,Winged helix-turn-helix
transcriptio,CUFF.37695.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18050.2 | Symbols: HIS1-3 | histone H1-3 | chr2:7846254-7846...    73   6e-14
AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846095-7846...    72   8e-14
AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription...    53   6e-08
AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription...    53   7e-08

>AT2G18050.2 | Symbols: HIS1-3 | histone H1-3 |
          chr2:7846254-7846670 FORWARD LENGTH=138
          Length = 138

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 5  YAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSG 51
          YAIAK +EEKHKS+LP +F+K L LQLKN  AKGKLVKI+ASYKLS 
Sbjct: 18 YAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSD 64


>AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 |
          chr2:7846095-7846670 FORWARD LENGTH=167
          Length = 167

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 5  YAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSG 51
          YAIAK +EEKHKS+LP +F+K L LQLKN  AKGKLVKI+ASYKLS 
Sbjct: 47 YAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSD 93


>AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=273
          Length = 273

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           +YAI K++EEKHKS LP  F+K+L + LK   A  KLVK+KAS+K+
Sbjct: 84  QYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128


>AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=202
          Length = 202

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           +YAI K++EEKHKS LP  F+K+L + LK   A  KLVK+KAS+K+
Sbjct: 84  QYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128