Miyakogusa Predicted Gene
- Lj2g3v1695250.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1695250.2 tr|B9IB18|B9IB18_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_247318
PE=4,49.54,4e-19,FAR1,FAR1 DNA binding domain,CUFF.37673.2
(124 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59470.2 | Symbols: | Far-red impaired responsive (FAR1) fam... 193 2e-50
AT3G59470.1 | Symbols: | Far-red impaired responsive (FAR1) fam... 193 2e-50
AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1) fam... 91 2e-19
AT2G43280.1 | Symbols: | Far-red impaired responsive (FAR1) fam... 80 4e-16
AT4G12850.1 | Symbols: | Far-red impaired responsive (FAR1) fam... 70 3e-13
AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 | chr4:179... 51 1e-07
AT4G12850.2 | Symbols: | Far-red impaired responsive (FAR1) fam... 47 3e-06
>AT3G59470.2 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr3:21979099-21980097 REVERSE LENGTH=251
Length = 251
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 110/124 (88%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
+P KR+K++RQRAETRVGC+AMIL+RK +SGKWV+TKFVKEH H L PG+ RR C+Y+QY
Sbjct: 125 LPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMPGRVRRGCIYDQY 184
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
PNEHDKI+EL QQLA EKKR+ATYKRHLE++F+ I++HNESLSK+IQHIVD V+++E ++
Sbjct: 185 PNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLEQRD 244
Query: 121 EQSH 124
Q +
Sbjct: 245 HQQN 248
>AT3G59470.1 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr3:21979099-21980097 REVERSE LENGTH=251
Length = 251
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 110/124 (88%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
+P KR+K++RQRAETRVGC+AMIL+RK +SGKWV+TKFVKEH H L PG+ RR C+Y+QY
Sbjct: 125 LPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMPGRVRRGCIYDQY 184
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
PNEHDKI+EL QQLA EKKR+ATYKRHLE++F+ I++HNESLSK+IQHIVD V+++E ++
Sbjct: 185 PNEHDKIQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLEQRD 244
Query: 121 EQSH 124
Q +
Sbjct: 245 HQQN 248
>AT3G07500.1 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr3:2392387-2393709 FORWARD LENGTH=217
Length = 217
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 10 RQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP--GKGRRDCVYEQYPNEHD-K 66
+ RA TR GC+A+I+V++ SG W+VTKF KEH HPL P RR+ Q P+E D K
Sbjct: 98 KPRAITREGCKALIVVKREKSGTWLVTKFEKEHNHPLLPLSPNVRRNFQLPQTPDEKDAK 157
Query: 67 IRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETK 119
IRELS +L+ E++R ++ L+++ ++EH+ L+ I ++ V+D+E+
Sbjct: 158 IRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININSVIQSVRDIESN 210
>AT2G43280.1 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr2:17989739-17990861 FORWARD LENGTH=206
Length = 206
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 9/109 (8%)
Query: 12 RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYPNEHDK-IR 68
R TR GC+AMI V+ SGKWV+TKFVKEH HPL SP + R +E DK I+
Sbjct: 90 RPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREAR------HTLDEKDKRIQ 143
Query: 69 ELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDME 117
EL+ +L +K+ A YK L+ ++EH+ ++KK++++V+ +K+ E
Sbjct: 144 ELTIELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFE 192
>AT4G12850.1 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr4:7537068-7538276 FORWARD LENGTH=183
Length = 183
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 16 RVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQYPNEHDKIRELSQQLA 75
R GC+A ILV+ SGKWVVT+F+KEH H L Y+ + ++ KI+EL++++
Sbjct: 78 REGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSS---YDSFADKERKIKELTEEIE 134
Query: 76 IEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETK 119
+ + Y+ L D ++ + E LS K++ IV+ VK +E +
Sbjct: 135 CQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLECQ 178
>AT4G38180.1 | Symbols: FRS5 | FAR1-related sequence 5 |
chr4:17906702-17909404 REVERSE LENGTH=788
Length = 788
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 1 MPDKREK---IVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
M +KR K I R R TRVGC+A + V+ SGKW+V+ FVK+H H L P
Sbjct: 129 MNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179
>AT4G12850.2 | Symbols: | Far-red impaired responsive (FAR1) family
protein | chr4:7537065-7537481 FORWARD LENGTH=138
Length = 138
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 16 RVGCRAMILVRKVSSGKWVVTKFVKEHTHPL 46
R GC+A ILV+ SGKWVVT+F+KEH H L
Sbjct: 79 REGCKATILVKMEKSGKWVVTRFIKEHNHSL 109