Miyakogusa Predicted Gene
- Lj2g3v1695250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1695250.1 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,76.56,0,no
description,NULL; P-loop containing nucleoside triphosphate
hydrolases,NULL; Smc hinge domain,SMC,CUFF.37673.1
(1189 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 1399 0.0
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 1389 0.0
AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 549 e-156
AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structura... 147 3e-35
AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromoso... 147 4e-35
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 83 9e-16
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 82 2e-15
AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 69 3e-11
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 69 3e-11
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1236 (59%), Positives = 890/1236 (72%), Gaps = 53/1236 (4%)
Query: 1 MASLQSP-GKIHRLEMENFKSYKGFQLIGPFHNFTAIIGPNGAGKSNLMDAISFVLGVRT 59
M ++QSP GKI +LEMENFKSYKG QL+GPF +FTAIIGPNG+GKSNLMDAISFVLGVRT
Sbjct: 1 MPAIQSPSGKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT 60
Query: 60 SHLRGAQLQDLIYAFDDREKEQTGRKAFVRLVYRLADNNTEIQFTRTITSAAASEYRIDG 119
LRG+QL+DLIYAFDDR+KEQ GRKAFVRLVY++ D+ E++FTR+ITSA SEYRID
Sbjct: 61 GQLRGSQLKDLIYAFDDRDKEQRGRKAFVRLVYQM-DDGVELRFTRSITSAGGSEYRIDN 119
Query: 120 NVVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDXXXXXXX 179
VV LD YN +L+SLGILVKARNFLVFQGDVESIASKNPKELTGL+E+ISGS+
Sbjct: 120 RVVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYE 179
Query: 180 XXXXXXXXXXXXXXXXXQKKKTVVMXXXXXXXXXXXXXXHLRLQAELKSLKKEHFLWQLL 239
QKKKT+ HLRLQ ELK+LK+E FLWQL
Sbjct: 180 GLEEKKASAEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALKRERFLWQLY 239
Query: 240 NVENDIKKTTEDLADERNSREGVKEELVNLKNEARKKEKEQAKYLKEIALGEKKIAERSN 299
N+ENDI+K ED+ E+++R+ V EL + EA K++ EQAKYLKEIA EKKIAE+S+
Sbjct: 240 NIENDIEKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSS 299
Query: 300 KLDK-SQAGLLKMKEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRGIRDLTAKMA 358
KL K Q LL+ KEE+ +Q+ I++L KM
Sbjct: 300 KLGKIQQPELLRFKEEIARIKAKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKME 359
Query: 359 DLEEKSRGVGGQVKLDGGDLKEYFRVKEEAGMKTAKLREEKELLDRQQHADTEAQKNLEE 418
+K + G++ + L++YFR+KEEAGMKT KLR+E E+L+RQ+ D EA +NLEE
Sbjct: 360 LFNKKRQDSSGKLPMLDSQLQDYFRLKEEAGMKTIKLRDEHEVLERQRRTDLEALRNLEE 419
Query: 419 NLQQLRSRESELNSQEEQTRARLKEILGSSAVNKDGLANLKKELRVMQDKHRNSKAKYEN 478
N QQL +R+++L+ Q ++ + R EI SS+ K+ +LK ELR +Q+KH N++
Sbjct: 420 NYQQLINRKNDLDEQIKRFKDRQGEIETSSSKYKNETTSLKTELRALQEKHVNAREASAK 479
Query: 479 LKMQIGELENQLRELKADRNENERSAKLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLA 538
LK +I ELE+QL +L A+R ENER ++L+QAVE+LKRLFQGVHGRMT+LCRP +KKYNLA
Sbjct: 480 LKTRIAELEDQLSDLTAERYENERDSRLTQAVESLKRLFQGVHGRMTDLCRPNRKKYNLA 539
Query: 539 VTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGGTAK 598
VTVAMG+FMDAVVVEDE TGK+CIKYLK+QRLPP TFIPLQSVRVK + ERLR LGGTAK
Sbjct: 540 VTVAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLGGTAK 599
Query: 599 LVFDVIQ--------------------FDPSMEKAILFAVGNTLVCDDLMEAKVLCWDGE 638
LVFDVIQ FDP +EKA+L+AVGNTLVCD+L EAKVL W GE
Sbjct: 600 LVFDVIQYPLHISEVSKIYIFVLNYSTFDPELEKAVLYAVGNTLVCDELEEAKVLSWSGE 659
Query: 639 GFRVVTLDGILLTKXXXXXXXXXXXXEARSKQWDDKKIEGLKQKKVQYESELEELGLIRD 698
F+VVT+DGILLTK EA+S +WDDKKIEGLK+ K +E +LE +G IR+
Sbjct: 660 RFKVVTVDGILLTKAGTMTGGTSGGMEAKSNKWDDKKIEGLKKNKEDFEQQLENIGSIRE 719
Query: 699 MHLKESEASGKISGLEKKIQYAEIEKRSISDKLSNLNQEKETMKEMIESMTPDLHKLNGA 758
M +KESE SGKISGLEKKIQYAEIEK+SI DKL L QE+ + E I+ + P+L K
Sbjct: 720 MQMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIKPELSKARTE 779
Query: 759 VDKRNAELRKLEKKINEITDQIFEDFSKSVGVANIREYEENQLKDAQNVADERLNLNSQL 818
VDKR E+ KLEK++NEI D+I++DFS+SVGV NIR YEE QLK A+ A+ERL L++QL
Sbjct: 780 VDKRKTEMNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYEETQLKTAEKEAEERLELSNQL 839
Query: 819 SKLKYQLEYEQNRDMSSQIQXXXXXXXXXXNDLKLVQXXXXXXXXXXXXXXXXINQLKGE 878
+KLKYQLEYEQNRD+ S+I+ DL+ +Q IN K E
Sbjct: 840 AKLKYQLEYEQNRDVGSRIRKIESSISSLETDLEGIQKTMSERKETAVKITNEINNWKKE 899
Query: 879 VEEWRSKSEDCEKEIQEWNKKVSAATTNISKLNGLIISKEAQIEQLMAQKQETLDKCELE 938
+EE + KSE+ EKEI +W K+ S ATT+I+KLN I SKE QIEQL++QKQE +KCELE
Sbjct: 900 MEECKQKSEEYEKEILDWKKQASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCELE 959
Query: 939 QISVPPVISDPMD-------------------QRSRPLKDRNKIEAEFKEKISTLISEIE 979
I++ PV+SD M+ Q RP R K+EAEF++KI + SEIE
Sbjct: 960 HITL-PVLSDAMEEDDSDGPQFDFSELGRAYLQERRP-SAREKVEAEFRQKIESKTSEIE 1017
Query: 980 RTAPNLKALEQYEVLLEKERGVIEEFEAVRKDEKEKTNKFNAVKERRYELFMDAFNHISG 1039
RTAPNL+AL+QYE + EKE+ V +EFEA RK+EK+ + FN VK++RYELFM+AFNHI+
Sbjct: 1018 RTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIAS 1077
Query: 1040 NIDKIYKQLTKSHTHPMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTV 1099
NIDKIYKQLTKS+THP+GGTAYLNLENEDDPFLHGIKYT MPPTKRFRDM+QLSGGEKTV
Sbjct: 1078 NIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTV 1137
Query: 1100 AALALLFSIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSC---------DDGNGFQ 1150
AALALLFSIHSYRPSPFFILDEVDAALDNLNVAK A FIRSKSC +DGNGFQ
Sbjct: 1138 AALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQ 1197
Query: 1151 SIVISQKEKFFDNADALVGVCRDSTRGCSGTVTFDL 1186
SIVIS K+ F+D A+ALVGV RD+ R CS T++FDL
Sbjct: 1198 SIVISLKDSFYDKAEALVGVYRDTERSCSSTMSFDL 1233
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of
chromosomes (SMC) family protein | chr3:20235818-20243701
FORWARD LENGTH=1238
Length = 1238
Score = 1389 bits (3595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/1237 (58%), Positives = 888/1237 (71%), Gaps = 56/1237 (4%)
Query: 1 MASLQSP-GKIHRLEMENFKSYKGFQLIGPFHNFTAIIGPNGAGKSNLMDAISFVLGVRT 59
M ++QSP GKI +LEMENFKSYKG QL+GPF +FTAIIGPNG+GKSNLMDAISFVLGVRT
Sbjct: 1 MPAIQSPSGKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT 60
Query: 60 SHLRGAQLQDLIYAFDDREKEQTGRKAFVRLVYRLADNNTEIQFTRTITSAAASEYRIDG 119
LRG+QL+DLIYAFDDR+KEQ GRKAFVRLVY++ D+ E++FTR+ITSA SEYRID
Sbjct: 61 GQLRGSQLKDLIYAFDDRDKEQRGRKAFVRLVYQM-DDGVELRFTRSITSAGGSEYRIDN 119
Query: 120 NVVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDXXXXXXX 179
VV LD YN +L+SLGILVKARNFLVFQGDVESIASKNPKELTGL+E+ISGS+
Sbjct: 120 RVVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYE 179
Query: 180 XXXXXXXXXXXXXXXXXQKKKTVVMXXXXXXXXXXXXXXHLRLQAELKSLKKEHFLWQLL 239
QKKKT+ HLRLQ ELK+LK+E FLWQL
Sbjct: 180 GLEEKKASAEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALKRERFLWQLY 239
Query: 240 NVENDIKKTTEDLADERNSREGVKEELVNLKNEARKKEKEQAKYLKEIALGEKKIAERSN 299
N+ENDI+K ED+ E+++R+ V EL + EA K++ EQAKYLKEIA EKKIAE+S+
Sbjct: 240 NIENDIEKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSS 299
Query: 300 KLDKSQAGLLKMKEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRGIRDLTAKMAD 359
KL K Q LL+ KEE+ +Q+ I++L KM
Sbjct: 300 KLGKIQPELLRFKEEIARIKAKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMEL 359
Query: 360 LEEKSRGVGGQVKLDGGDLKEYFRVKEEAGMKTAKLREEKELLDRQQHADTEAQKNLEEN 419
+K + G++ + L++YFR+KEEAGMKT KLR+E E+L+RQ+ D EA +NLEEN
Sbjct: 360 FNKKRQDSSGKLPMLDSQLQDYFRLKEEAGMKTIKLRDEHEVLERQRRTDLEALRNLEEN 419
Query: 420 LQQLRSRESELNSQEEQTRARLKEILGSSAVNKDGLANLKKELRVMQDKHRNSKAKYENL 479
QQL +R+++L+ Q ++ + R EI SS+ K+ +LK ELR +Q+KH N++ L
Sbjct: 420 YQQLINRKNDLDEQIKRFKDRQGEIETSSSKYKNETTSLKTELRALQEKHVNAREASAKL 479
Query: 480 KMQIGELENQLRELKADRNENERSAKLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLAV 539
K +I ELE+QL +L A+R ENER ++L+QAVE+LKRLFQGVHGRMT+LCRP +KKYNLAV
Sbjct: 480 KTRIAELEDQLSDLTAERYENERDSRLTQAVESLKRLFQGVHGRMTDLCRPNRKKYNLAV 539
Query: 540 TVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGGTAKL 599
TVAMG+FMDAVVVEDE TGK+CIKYLK+QRLPP TFIPLQSVRVK + ERLR LGGTAKL
Sbjct: 540 TVAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLGGTAKL 599
Query: 600 VFDVIQ--------------------FDPSMEKAILFAVGNTLVCDDLMEAKVLCWDGEG 639
VFDVIQ FDP +EKA+L+AVGNTLVCD+L EAKVL W GE
Sbjct: 600 VFDVIQYPLHISEVSKIYIFVLNYSTFDPELEKAVLYAVGNTLVCDELEEAKVLSWSGER 659
Query: 640 FRVVTLDGILLTKXXXXXXXXXXXXEARSKQWDDKKIEGLKQKKVQYESELEELGLIRDM 699
F+VVT+DGILLTK EA+S +WDDKKIEGLK+ K +E +LE +G IR+M
Sbjct: 660 FKVVTVDGILLTKAGTMTGGTSGGMEAKSNKWDDKKIEGLKKNKEDFEQQLENIGSIREM 719
Query: 700 HLKESEASGKISGLEKKIQYAEIEKRSISDKLSNLNQEKETMKEMIESMTPDLHK--LNG 757
+KESE SGKISGLEKKIQYAEIEK+SI DKL L QE+ + E I+ + P+L K
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIKPELSKAIART 779
Query: 758 AVDKRNAELRKLEKKINEITDQIFEDFSKSVGVANIREYEENQLKDAQNVADERLNLNSQ 817
VDKR E+ KLEK++NEI D+I++DFS+SVGV NIR YEE QLK A+ A+ERL L++Q
Sbjct: 780 EVDKRKTEMNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYEETQLKTAEKEAEERLELSNQ 839
Query: 818 LSKLKYQLEYEQNRDMSSQIQXXXXXXXXXXNDLKLVQXXXXXXXXXXXXXXXXINQLKG 877
L+KLKYQLEYEQNRD+ S+I+ DL+ +Q IN K
Sbjct: 840 LAKLKYQLEYEQNRDVGSRIRKIESSISSLETDLEGIQKTMSERKETAVKITNEINNWKK 899
Query: 878 EVEEWRSKSEDCEKEIQEWNKKVSAATTNISKLNGLIISKEAQIEQLMAQKQETLDKCEL 937
E+EE + KSE+ EKEI +W K+ S ATT+I+KLN I SKE QIEQL++QKQE +KCEL
Sbjct: 900 EMEECKQKSEEYEKEILDWKKQASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCEL 959
Query: 938 EQISVPPVISDPMD-------------------QRSRPLKDRNKIEAEFKEKISTLISEI 978
E I++ PV+SD M+ Q RP R K+EAEF++KI + SEI
Sbjct: 960 EHITL-PVLSDAMEEDDSDGPQFDFSELGRAYLQERRP-SAREKVEAEFRQKIESKTSEI 1017
Query: 979 ERTAPNLKALEQYEVLLEKERGVIEEFEAVRKDEKEKTNKFNAVKERRYELFMDAFNHIS 1038
ERTAPNL+AL+QYE + EKE+ V +EFEA RK+EK+ + FN VK++RYELFM+AFNHI+
Sbjct: 1018 ERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIA 1077
Query: 1039 GNIDKIYKQLTKSHTHPMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKT 1098
NIDKIYKQLTKS+THP+GGTAYLNLENEDDPFLHGIKYT MPPTKRFRDM+QLSGGEKT
Sbjct: 1078 SNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKT 1137
Query: 1099 VAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSC---------DDGNGF 1149
VAALALLFSIH RPSPFFILDEVDAALDNLNVAK A FIRSKSC +DGNGF
Sbjct: 1138 VAALALLFSIH--RPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGF 1195
Query: 1150 QSIVISQKEKFFDNADALVGVCRDSTRGCSGTVTFDL 1186
QSIVIS K+ F+D A+ALVGV RD+ R CS T++FDL
Sbjct: 1196 QSIVISLKDSFYDKAEALVGVYRDTERSCSSTMSFDL 1232
>AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of
chromosomes (SMC) family protein | chr3:20240428-20243701
FORWARD LENGTH=453
Length = 453
Score = 549 bits (1415), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/449 (61%), Positives = 335/449 (74%), Gaps = 30/449 (6%)
Query: 766 LRKLEKKINEITDQIFEDFSKSVGVANIREYEENQLKDAQNVADERLNLNSQLSKLKYQL 825
+ KLEK++NEI D+I++DFS+SVGV NIR YEE QLK A+ A+ERL L++QL+KLKYQL
Sbjct: 1 MNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYEETQLKTAEKEAEERLELSNQLAKLKYQL 60
Query: 826 EYEQNRDMSSQIQXXXXXXXXXXNDLKLVQXXXXXXXXXXXXXXXXINQLKGEVEEWRSK 885
EYEQNRD+ S+I+ DL+ +Q IN K E+EE + K
Sbjct: 61 EYEQNRDVGSRIRKIESSISSLETDLEGIQKTMSERKETAVKITNEINNWKKEMEECKQK 120
Query: 886 SEDCEKEIQEWNKKVSAATTNISKLNGLIISKEAQIEQLMAQKQETLDKCELEQISVPPV 945
SE+ EKEI +W K+ S ATT+I+KLN I SKE QIEQL++QKQE +KCELE I++P V
Sbjct: 121 SEEYEKEILDWKKQASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCELEHITLP-V 179
Query: 946 ISDPMD-------------------QRSRPLKDRNKIEAEFKEKISTLISEIERTAPNLK 986
+SD M+ Q RP R K+EAEF++KI + SEIERTAPNL+
Sbjct: 180 LSDAMEEDDSDGPQFDFSELGRAYLQERRP-SAREKVEAEFRQKIESKTSEIERTAPNLR 238
Query: 987 ALEQYEVLLEKERGVIEEFEAVRKDEKEKTNKFNAVKERRYELFMDAFNHISGNIDKIYK 1046
AL+QYE + EKE+ V +EFEA RK+EK+ + FN VK++RYELFM+AFNHI+ NIDKIYK
Sbjct: 239 ALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYK 298
Query: 1047 QLTKSHTHPMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLF 1106
QLTKS+THP+GGTAYLNLENEDDPFLHGIKYT MPPTKRFRDM+QLSGGEKTVAALALLF
Sbjct: 299 QLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLF 358
Query: 1107 SIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSC---------DDGNGFQSIVISQK 1157
SIHSYRPSPFFILDEVDAALDNLNVAK A FIRSKSC +DGNGFQSIVIS K
Sbjct: 359 SIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLK 418
Query: 1158 EKFFDNADALVGVCRDSTRGCSGTVTFDL 1186
+ F+D A+ALVGV RD+ R CS T++FDL
Sbjct: 419 DSFYDKAEALVGVYRDTERSCSSTMSFDL 447
>AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structural
maintenance of chromosome 3 | chr5:19701908-19709091
FORWARD LENGTH=1241
Length = 1241
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 174/319 (54%), Gaps = 39/319 (12%)
Query: 875 LKGEVEEWRSKSEDCEKEIQEWNKKVSAATTN----ISKLNGLIISKEAQIEQLMAQKQE 930
LK V+E ++ D E ++Q+ KK + KLN L I+ +EQ+ QK
Sbjct: 942 LKKSVDELKASRVDAEFKVQDMKKKYNELEMREKGYKKKLNDLQIAFTKHMEQI--QKD- 998
Query: 931 TLDKCELEQISVPPVISDPMDQRSRPLKDRNKIEA-EFK---EKISTLISEIERTAPNLK 986
+ DP D+ L D N EA + K E ++ L ++++ PNL
Sbjct: 999 ---------------LVDP-DKLQATLMDNNLNEACDLKRALEMVALLEAQLKELNPNLD 1042
Query: 987 ALEQYEVLLEKERGVIEEFEAVRKDEKEKTNKFNAVKERRYELFMDAFNHISGNIDKIYK 1046
++ +Y +E G ++E +V ++ + +++ +++RR + FM FN IS + ++Y+
Sbjct: 1043 SIAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGFNTISLKLKEMYQ 1102
Query: 1047 QLTKSHTHPMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLF 1106
+T +GG A L L + DPF G+ ++ PP K ++++ LSGGEKT+++LAL+F
Sbjct: 1103 MIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVF 1156
Query: 1107 SIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSCDDGNGFQSIVISQKEKFFDNADA 1166
++H Y+P+P +++DE+DAALD NV+ +++ ++ D Q I+IS + F+ AD
Sbjct: 1157 ALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKD----AQFIIISLRNNMFELADR 1212
Query: 1167 LVGVCRDSTRGCSGTVTFD 1185
LVG+ + T C+ ++T +
Sbjct: 1213 LVGIYK--TDNCTKSITIN 1229
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 167/693 (24%), Positives = 289/693 (41%), Gaps = 77/693 (11%)
Query: 10 IHRLEMENFKSYKGFQLIGPFH-NFTAIIGPNGAGKSNLMDAISFVLGVRTSHLRGAQLQ 68
I L M NFKSY G Q +GPFH +F+A++GPNG+GKSN++DA+ FV G R +R ++
Sbjct: 26 IKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 85
Query: 69 DLIYAFDDREK-EQTGRKAFVRLVYRLADN------NTEIQFTRTITSAAASEYRIDGNV 121
+LI+ + + + G + L + ++ TR +S+Y I+
Sbjct: 86 ELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYINERS 145
Query: 122 VTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKE-------LTGLIEQISGSDXX 174
+LK G+ + FL+ QG+VE I+ PK +E I G++
Sbjct: 146 SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKY 205
Query: 175 XXXXXXXXXXXXXXXXXXXXXXQKKKTVVMXXXXXXXXXXXXXXHLRLQAELKSLKK-EH 233
+ ++ V+ L+ +AE LK+ H
Sbjct: 206 VEKIDELNKQLETL--------NESRSGVVQMVKLAEKERDNLEGLKDEAETYMLKELSH 257
Query: 234 FLWQ----LLNVENDIKKTTE----------DLADERNSREGVKEELVNLKNEARKKEKE 279
WQ + E+ + K TE L DER + EEL ++ K +K
Sbjct: 258 LKWQEKATKMAYEDTVAKITEQRDSLQNLENSLKDERVKMDESNEELKKFESVHEKHKKR 317
Query: 280 QAKYLKEIALGEKKIAERSNKLDKSQAGLLKMKEEMXXXXXXXXXXXXXXXXXXXXXXXX 339
Q E+ ++K E + K + L +K+++
Sbjct: 318 QEVLDNELRACKEKFKEFERQDVKHREDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDS 377
Query: 340 XXXXXXLQRGIRDLTAKMADLEEKSRGVGGQVKLDG-GDLKEYFRVKEEAG-------MK 391
LQ I L + D E+K + K++ G E +++ E +
Sbjct: 378 SNLIPKLQENIPKLQKVLLDEEKKLEEIKAIAKVETEGYRSELTKIRAELEPWEKDLIVH 437
Query: 392 TAKL---REEKELLDRQQHADTEAQKNLEENLQQLRSRESELNSQEEQTRARLK----EI 444
KL E ELL ++ A +A + ++ L + +R+ E + +A +K E
Sbjct: 438 RGKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEA 497
Query: 445 LGSSAVNKDGLANLKKELRVMQDKHRNSKAKYENLKMQIGELENQLRELKADRNENERSA 504
+ + V ++ L KE + + + ++ K LK + ++Q LKA E +
Sbjct: 498 IEARKVEEESL----KEQETLVPQEQAAREKVAELKSAMNSEKSQNEVLKAVLRAKENNQ 553
Query: 505 KLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKY 564
+G++GRM +L KY++A++ A +D +VVE + + C++
Sbjct: 554 ------------IEGIYGRMGDLG-AIDAKYDVAISTACAG-LDYIVVETTSSAQACVEL 599
Query: 565 LKDQRLPPQTFIPL--QSVRVKPIMERLRTLGGTAKLVFDVIQF-DPSMEKAILFAVGNT 621
L+ L TF+ L Q+ + + E+++T +L FD+++ D M+ A A+GNT
Sbjct: 600 LRKGNLGFATFMILEKQTDHIHKLKEKVKTPEDVPRL-FDLVRVKDERMKLAFYAALGNT 658
Query: 622 LVCDDLMEAKVLCWDG--EGFRVVTLDGILLTK 652
+V DL +A + + G E RVV LDG L K
Sbjct: 659 VVAKDLDQATRIAYGGNREFRRVVALDGALFEK 691
>AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome 3
| chr5:19701908-19709091 FORWARD LENGTH=1244
Length = 1244
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 176/315 (55%), Gaps = 31/315 (9%)
Query: 875 LKGEVEEWRSKSEDCEKEIQEWNKKVSAATTN----ISKLNGLIISKEAQIEQLMAQKQE 930
LK V+E ++ D E ++Q+ KK + KLN L I+ +EQ+ +++
Sbjct: 945 LKKSVDELKASRVDAEFKVQDMKKKYNELEMREKGYKKKLNDLQIAFTKHMEQI---QKD 1001
Query: 931 TLDKCELEQISVPPVISDPMDQRSRPLKDRNKIEAEFKEKISTLISEIERTAPNLKALEQ 990
+D +L+ + +++ D + R L E ++ L ++++ PNL ++ +
Sbjct: 1002 LVDPDKLQATLMDNNLNEACDLK-RAL-----------EMVALLEAQLKELNPNLDSIAE 1049
Query: 991 YEVLLEKERGVIEEFEAVRKDEKEKTNKFNAVKERRYELFMDAFNHISGNIDKIYKQLTK 1050
Y +E G ++E +V ++ + +++ +++RR + FM FN IS + ++Y+ +T
Sbjct: 1050 YRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGFNTISLKLKEMYQMIT- 1108
Query: 1051 SHTHPMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHS 1110
+GG A L L + DPF G+ ++ PP K ++++ LSGGEKT+++LAL+F++H
Sbjct: 1109 -----LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHH 1163
Query: 1111 YRPSPFFILDEVDAALDNLNVAKFAGFIRSKSCDDGNGFQSIVISQKEKFFDNADALVGV 1170
Y+P+P +++DE+DAALD NV+ +++ ++ D Q I+IS + F+ AD LVG+
Sbjct: 1164 YKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKD----AQFIIISLRNNMFELADRLVGI 1219
Query: 1171 CRDSTRGCSGTVTFD 1185
+ T C+ ++T +
Sbjct: 1220 YK--TDNCTKSITIN 1232
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 167/693 (24%), Positives = 289/693 (41%), Gaps = 77/693 (11%)
Query: 10 IHRLEMENFKSYKGFQLIGPFH-NFTAIIGPNGAGKSNLMDAISFVLGVRTSHLRGAQLQ 68
I L M NFKSY G Q +GPFH +F+A++GPNG+GKSN++DA+ FV G R +R ++
Sbjct: 26 IKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 85
Query: 69 DLIYAFDDREK-EQTGRKAFVRLVYRLADN------NTEIQFTRTITSAAASEYRIDGNV 121
+LI+ + + + G + L + ++ TR +S+Y I+
Sbjct: 86 ELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYINERS 145
Query: 122 VTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKE-------LTGLIEQISGSDXX 174
+LK G+ + FL+ QG+VE I+ PK +E I G++
Sbjct: 146 SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKY 205
Query: 175 XXXXXXXXXXXXXXXXXXXXXXQKKKTVVMXXXXXXXXXXXXXXHLRLQAELKSLKK-EH 233
+ ++ V+ L+ +AE LK+ H
Sbjct: 206 VEKIDELNKQLETL--------NESRSGVVQMVKLAEKERDNLEGLKDEAETYMLKELSH 257
Query: 234 FLWQ----LLNVENDIKKTTE----------DLADERNSREGVKEELVNLKNEARKKEKE 279
WQ + E+ + K TE L DER + EEL ++ K +K
Sbjct: 258 LKWQEKATKMAYEDTVAKITEQRDSLQNLENSLKDERVKMDESNEELKKFESVHEKHKKR 317
Query: 280 QAKYLKEIALGEKKIAERSNKLDKSQAGLLKMKEEMXXXXXXXXXXXXXXXXXXXXXXXX 339
Q E+ ++K E + K + L +K+++
Sbjct: 318 QEVLDNELRACKEKFKEFERQDVKHREDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDS 377
Query: 340 XXXXXXLQRGIRDLTAKMADLEEKSRGVGGQVKLDG-GDLKEYFRVKEEAG-------MK 391
LQ I L + D E+K + K++ G E +++ E +
Sbjct: 378 SNLIPKLQENIPKLQKVLLDEEKKLEEIKAIAKVETEGYRSELTKIRAELEPWEKDLIVH 437
Query: 392 TAKL---REEKELLDRQQHADTEAQKNLEENLQQLRSRESELNSQEEQTRARLK----EI 444
KL E ELL ++ A +A + ++ L + +R+ E + +A +K E
Sbjct: 438 RGKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEA 497
Query: 445 LGSSAVNKDGLANLKKELRVMQDKHRNSKAKYENLKMQIGELENQLRELKADRNENERSA 504
+ + V ++ L KE + + + ++ K LK + ++Q LKA E +
Sbjct: 498 IEARKVEEESL----KEQETLVPQEQAAREKVAELKSAMNSEKSQNEVLKAVLRAKENNQ 553
Query: 505 KLSQAVETLKRLFQGVHGRMTELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKY 564
+G++GRM +L KY++A++ A +D +VVE + + C++
Sbjct: 554 ------------IEGIYGRMGDLG-AIDAKYDVAISTACAG-LDYIVVETTSSAQACVEL 599
Query: 565 LKDQRLPPQTFIPL--QSVRVKPIMERLRTLGGTAKLVFDVIQF-DPSMEKAILFAVGNT 621
L+ L TF+ L Q+ + + E+++T +L FD+++ D M+ A A+GNT
Sbjct: 600 LRKGNLGFATFMILEKQTDHIHKLKEKVKTPEDVPRL-FDLVRVKDERMKLAFYAALGNT 658
Query: 622 LVCDDLMEAKVLCWDG--EGFRVVTLDGILLTK 652
+V DL +A + + G E RVV LDG L K
Sbjct: 659 VVAKDLDQATRIAYGGNREFRRVVALDGALFEK 691
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of
chromosomes (SMC) family protein |
chr3:17486765-17493178 FORWARD LENGTH=1171
Length = 1171
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 17/174 (9%)
Query: 10 IHRLEMENFKSYKGFQLIGPFH-NFTAIIGPNGAGKSNLMDAISFVLGVRT-SHLRGAQL 67
I + +E FKSY ++ F +F AI G NG+GKSN++D+I FVLG+ +R A L
Sbjct: 3 IKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 68 QDLIYAFDDREKEQTG-RKAFVRLVYRLADNN---------TEIQFTRTITSAAASEYRI 117
Q+L+Y ++ Q G +A V + + ++ N +EI TR I ++Y I
Sbjct: 63 QELVY-----KQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLI 117
Query: 118 DGNVVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 171
+G + + S+ + V +FL+ QG + + + P E+ ++E+ +G+
Sbjct: 118 NGKLAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGT 171
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 1055 PMGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHSYRPS 1114
P GGT FL G++ + + +LSGG++++ AL+L+ ++ ++P+
Sbjct: 1054 PEGGT-----------FLDGLEVRVAFGDVWKQSLSELSGGQRSLLALSLILALLLFKPA 1102
Query: 1115 PFFILDEVDAALDNLNVAKFAGFIRSKSCDDGNGFQSIVISQKEKFFDNADAL 1167
P +ILDEVDAALD + I+S Q IV+S KE F NAD L
Sbjct: 1103 PIYILDEVDAALDLSHTQNIGRMIKSHFPHS----QFIVVSLKEGMFSNADVL 1151
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 25/178 (14%)
Query: 10 IHRLEMENFKSYKGFQLIGPFH-NFTAIIGPNGAGKSNLMDAISFVLGVRT-SHLRGAQL 67
I + +E FKSY ++ F +F AI G NG+GKSN++D+I FVLG+ +R A L
Sbjct: 3 IKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 68 QDLIY--------------AFDDREKEQTGRKAFVRLVYRLADNNTEIQFTRTITSAAAS 113
Q+L+Y FD+ E+ ++ L Y + + EI TR I +
Sbjct: 63 QELVYKQGQAGITKATVSVTFDNSERHRSP------LGY---EEHPEITVTRQIVVGGRN 113
Query: 114 EYRIDGNVVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 171
+Y I+G + S+ + V +FL+ QG + + + P E+ ++E+ +G+
Sbjct: 114 KYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGT 171
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 1067 EDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAAL 1126
ED FL G++ + + +LSGG++++ AL+L+ ++ ++P+P +ILDEVDAAL
Sbjct: 1058 EDGNFLDGLEVRVAFGKVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAAL 1117
Query: 1127 DNLNVAKFAGFIRSKSCDDGNGFQSIVISQKEKFFDNADAL 1167
D + IR+ Q IV+S KE F+NA+ L
Sbjct: 1118 DLSHTQNIGRMIRAHFPHS----QFIVVSLKEGMFNNANVL 1154
>AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1089 MDQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSCDDGNG 1148
M QLSGG+KTV ALAL+F+I P+PF++ DE+DAALD IR + D G
Sbjct: 1096 MKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDYGTQ 1155
Query: 1149 FQSIVISQKEKFFDNADALVGV 1170
F I + + + AD + GV
Sbjct: 1156 F--ITTTFRPELVRVADKIYGV 1175
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 10 IHRLEMENFKSYKGFQLIGPFHN-FTAIIGPNGAGKSNLMDAISFVLGVRTSHLRGAQLQ 68
I ++ +E FKSYK F N ++G NG+GKSN AI FVL +LR
Sbjct: 3 IKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRH 62
Query: 69 DLIYAFDDREKEQTGRK---AFVRLVYRLADN-----NTEIQFTRTITSAAASEYRIDGN 120
L++ E G + AFV +V+ +DN EI+ RT+ +Y +DG
Sbjct: 63 ALLH-------EGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTV-GLKKDDYFLDGK 114
Query: 121 VVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 171
+T L+S G ++V QG + S+ E L+++I G+
Sbjct: 115 HITKGEVMNLLESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGT 165
>AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1089 MDQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKFAGFIRSKSCDDGNG 1148
M QLSGG+KTV ALAL+F+I P+PF++ DE+DAALD IR + D G
Sbjct: 1096 MKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDYGTQ 1155
Query: 1149 FQSIVISQKEKFFDNADALVGV 1170
F I + + + AD + GV
Sbjct: 1156 F--ITTTFRPELVRVADKIYGV 1175
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 10 IHRLEMENFKSYKGFQLIGPFHN-FTAIIGPNGAGKSNLMDAISFVLGVRTSHLRGAQLQ 68
I ++ +E FKSYK F N ++G NG+GKSN AI FVL +LR
Sbjct: 3 IKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRH 62
Query: 69 DLIYAFDDREKEQTGRK---AFVRLVYRLADN-----NTEIQFTRTITSAAASEYRIDGN 120
L++ E G + AFV +V+ +DN EI+ RT+ +Y +DG
Sbjct: 63 ALLH-------EGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTV-GLKKDDYFLDGK 114
Query: 121 VVTLDIYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 171
+T L+S G ++V QG + S+ E L+++I G+
Sbjct: 115 HITKGEVMNLLESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGT 165