Miyakogusa Predicted Gene

Lj2g3v1670850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1670850.1 Non Chatacterized Hit- tr|F6HMU4|F6HMU4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.68,2e-18,Domain in the RNA-binding Lupus La
protein;,RNA-binding protein Lupus La; seg,NULL; no
description,W,CUFF.37639.1
         (498 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription...   189   5e-48
AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription...   142   4e-34
AT5G21160.1 | Symbols:  | LA RNA-binding protein | chr5:7199191-...    96   7e-20
AT5G21160.2 | Symbols:  | LA RNA-binding protein | chr5:7198817-...    96   8e-20
AT5G21160.3 | Symbols:  | LA RNA-binding protein | chr5:7198817-...    96   8e-20
AT5G46250.1 | Symbols:  | RNA-binding protein | chr5:18755388-18...    63   6e-10
AT5G46250.2 | Symbols:  | RNA-binding protein | chr5:18755388-18...    62   1e-09
AT5G46250.3 | Symbols:  | RNA-binding protein | chr5:18755388-18...    61   1e-09
AT2G43970.2 | Symbols:  | RNA-binding protein | chr2:18205535-18...    53   4e-07
AT2G43970.1 | Symbols:  | RNA-binding protein | chr2:18205535-18...    53   5e-07

>AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr4:16997433-17000410 FORWARD
           LENGTH=523
          Length = 523

 Score =  189 bits (479), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 191/397 (48%), Gaps = 49/397 (12%)

Query: 76  PAWNRPSNGAGLEVQPVMDAQSWPALSEAARAKMKSESSKGLLDIASVPXXXXX------ 129
           P W RPSNGA  EV PVM A SWPALSE  +A     SS  L  +  VP           
Sbjct: 114 PVWKRPSNGAS-EVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPV 172

Query: 130 XXXXXXXXXXXXXXXXXVNNNTVPTH--QKPIKHNSSNTSSYGGHQHQSAPQVSNAATGS 187
                             N N  P H  Q+  K  +  + S  G   Q + Q S     S
Sbjct: 173 TQGIANASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPS 232

Query: 188 HNSYPKDHTHRSGYVSNDH-----PQQRNTFRNRNNGPHQRGDGAHHHNYGNRRDQD--- 239
           HN  P+    ++G+ S +H     P QR+++RN+N        G HH ++G RR+Q+   
Sbjct: 233 HNPSPRGQNQKNGFASQNHGGTENPSQRDSYRNQN--------GNHHQSHGGRRNQEHGN 284

Query: 240 --WNTRRNFNGRDIHMXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGF-HELXXX 296
             W  +R+FNGR+ +                             +PF  HI F  EL   
Sbjct: 285 QNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMA--AQPFPSHIPFPTELAQS 342

Query: 297 XXXXXXXXXXXDSLRGVPFVPPVPHHAMFFA-GSDPQLHTKIVNQIDYYFSNENLVKDTF 355
                           +P++ P+PH   FF    DP LH K+  QI YYFS+ENL+ D +
Sbjct: 343 SYYPR-----------MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIY 391

Query: 356 LRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDWMRWIM 415
           LR  M+++G+VP++++AGFKKV  LTDNIQ I++A+Q S  VEVQGD IR+R++W  W++
Sbjct: 392 LRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVL 451

Query: 416 PSPQFPNVTSHG---VLNHDKLAEQLHNISLETTNYD 449
                 N T  G   V   D +A++L N+S++ ++ D
Sbjct: 452 RR----NPTGSGPQSVDRADAVAKRLGNLSVDQSSAD 484


>AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:26427639-26429772 FORWARD
           LENGTH=453
          Length = 453

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 187/386 (48%), Gaps = 36/386 (9%)

Query: 76  PAWNRPSNGAGLEVQPVMDA-QSWPALSEAARAK-MKSES---SKGLLD--IASVPXXXX 128
           P WN PS+ +  +V PVM A +SWPALS +AR+  +KS S   SK   D   +S+P    
Sbjct: 78  PVWNMPSSNSSSDVGPVMGAAESWPALSLSARSSSIKSPSLDASKPFPDGSSSSIPPPQA 137

Query: 129 XXXXXXXXXXXXXXXXXXVNNNTVPTHQ-KPIKHNSSNTSSYGGHQHQSAPQVSNAATGS 187
                               N+ V   Q KP + N++ +SS       +A  +       
Sbjct: 138 TSNTSTNANAGSSVSATSSENSAVNNSQRKPFRRNNNTSSSSTSSNVSNAAPL------- 190

Query: 188 HNSYPKDHTHRSGYVSNDHPQQRNTFRNRNNGPHQRGDGAHHHNYGNRRD-----QDWNT 242
            N+  ++H+ R G         RN+ RNRN+  + RG+G HH   GNRR+     Q   +
Sbjct: 191 -NTRDQNHSQRGGGSFGSG-NFRNSQRNRNSSSYPRGEGLHH---GNRRNYEHGNQSGFS 245

Query: 243 RRNFNGRDIHMXXXX-----XXXXXXXXXXXXXXXXXXXXXXXVRPFGGHIGFHELXXXX 297
            RN++GRD+H+                                +  +GG I + +     
Sbjct: 246 HRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHV 305

Query: 298 XXXXXXXXXXDSLRGVPFVPPVPHHAMFFAGSDPQLHTKIVNQIDYYFSNENLVKDTFLR 357
                      S   +  V P P   M+F   D  L+ KI+ Q++YYFS +NL +D  LR
Sbjct: 306 FMPHP------SPDPMGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLR 359

Query: 358 QNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQTSYVVEVQGDKIRRRNDWMRWIMPS 417
             M+D+GWVP+++IA F+++  LT+NIQ IL+A+++S VVE+QG+ +RRR DW ++++P 
Sbjct: 360 DQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPR 419

Query: 418 PQFPNVTSHGVLNHDKLAEQLHNISL 443
               +  + G  N+  L  Q+ +++L
Sbjct: 420 EPSRSGPAAGASNNASLVSQIESMTL 445


>AT5G21160.1 | Symbols:  | LA RNA-binding protein |
           chr5:7199191-7203879 REVERSE LENGTH=826
          Length = 826

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 333 LHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQ 392
           L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+ 
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337

Query: 393 TSYVVEVQGDKIRRRNDWMRWI 414
            S  VEVQGD+IR+R+ W  WI
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI 359


>AT5G21160.2 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=832
          Length = 832

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 333 LHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQ 392
           L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+ 
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337

Query: 393 TSYVVEVQGDKIRRRNDWMRWI 414
            S  VEVQGD+IR+R+ W  WI
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI 359


>AT5G21160.3 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=833
          Length = 833

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 333 LHTKIVNQIDYYFSNENLVKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQ 392
           L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+ 
Sbjct: 278 LRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALG 337

Query: 393 TSYVVEVQGDKIRRRNDWMRWI 414
            S  VEVQGD+IR+R+ W  WI
Sbjct: 338 FSNSVEVQGDQIRKRDKWSDWI 359


>AT5G46250.1 | Symbols:  | RNA-binding protein |
           chr5:18755388-18758056 FORWARD LENGTH=422
          Length = 422

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 7/91 (7%)

Query: 332 QLHTKIVNQIDYYFSNENLVKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILD 389
           +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ 
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 390 AVQTSYVVEVQGDKIRRRNDWMRWIMPSPQF 420
           A++ S  + V  D+ +     ++ + P P+ 
Sbjct: 162 ALKESSFLVVSADEKK-----VKRLSPLPEI 187


>AT5G46250.2 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 332 QLHTKIVNQIDYYFSNENLVKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILD 389
           +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ 
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 390 AVQTSYVVEVQGD--KIRR 406
           A++ S  + V  D  K++R
Sbjct: 162 ALKESSFLVVSADEKKVKR 180


>AT5G46250.3 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 332 QLHTKIVNQIDYYFSNENLVKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILD 389
           +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ 
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161

Query: 390 AVQTSYVVEVQGD--KIRR 406
           A++ S  + V  D  K++R
Sbjct: 162 ALKESSFLVVSADEKKVKR 180


>AT2G43970.2 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=529
          Length = 529

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 336 KIVNQIDYYFSNENLVKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQT 393
           KIVNQ++YYFS+ NL     L + +  D +G+VPI ++A FKK+  + +N   +   +Q 
Sbjct: 196 KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQN 255

Query: 394 S--YVVEVQGDKIRR 406
           S    V   G K+RR
Sbjct: 256 SAKLFVSEDGKKVRR 270


>AT2G43970.1 | Symbols:  | RNA-binding protein |
           chr2:18205535-18208031 REVERSE LENGTH=545
          Length = 545

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 336 KIVNQIDYYFSNENLVKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVQT 393
           KIVNQ++YYFS+ NL     L + +  D +G+VPI ++A FKK+  + +N   +   +Q 
Sbjct: 196 KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQN 255

Query: 394 S--YVVEVQGDKIRR 406
           S    V   G K+RR
Sbjct: 256 SAKLFVSEDGKKVRR 270