Miyakogusa Predicted Gene

Lj2g3v1648050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1648050.1 NODE_51673_length_735_cov_152.812241.path1.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17705.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   201   1e-52

>AT2G17705.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G08330.1);
           Has 135 Blast hits to 135 proteins in 32 species: Archae
           - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91;
           Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
           | chr2:7692506-7692889 FORWARD LENGTH=127
          Length = 127

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 107/126 (84%)

Query: 4   SSSIYCCTECGTDLNLNPAYAFPPDFYFEAGNKHSVSFSAVDSTKFTFEKEDKIRPFFET 63
           +S+IY C ECG+DLNLNP   FPPDFYFEAGNK ++SF+AVD+ KF FEKEDKI PFFET
Sbjct: 2   ASTIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFET 61

Query: 64  LNYWGIQRKRTKIKCCNCRRLVGHIYDDGPPLTDSPGQFHMGPSQVIPRNPRYRFKTKAL 123
           LNYWGIQRKRTKIKC +C  L+G+IYDDGPPLT   GQ+  GPSQVIPR PRYRFKTKA+
Sbjct: 62  LNYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAV 121

Query: 124 RITSPT 129
           +++S T
Sbjct: 122 QVSSQT 127