Miyakogusa Predicted Gene

Lj2g3v1647850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1647850.1 tr|A9RQ75|A9RQ75_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_117579,31.68,1e-18,DNase-RNase,Bifunctional nuclease;
seg,NULL; Hypothetical protein TM0160,Bifunctional
nuclease,NODE_62094_length_1332_cov_62.785286.path1.1
         (323 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66050.1 | Symbols:  | Wound-responsive family protein | chr5...   250   7e-67
AT5G66050.2 | Symbols:  | Wound-responsive family protein | chr5...   236   2e-62
AT1G19660.2 | Symbols:  | Wound-responsive family protein | chr1...   119   3e-27
AT1G19660.1 | Symbols:  | Wound-responsive family protein | chr1...   119   3e-27
AT1G75380.3 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   114   6e-26
AT1G75380.2 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   114   6e-26
AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   114   6e-26

>AT5G66050.1 | Symbols:  | Wound-responsive family protein |
           chr5:26412333-26414428 REVERSE LENGTH=340
          Length = 340

 Score =  250 bits (639), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 120/245 (48%), Positives = 176/245 (71%), Gaps = 1/245 (0%)

Query: 76  DFLEASLLLSETISHYHMWRQRFQPELQRKSRRPSIPLSVQEKTSRSYNNLSRQGFLQRF 135
           +FL+AS+L++ET  HY M R  F+ +   ++ RP  P S++   SR        GFL++F
Sbjct: 82  EFLQASVLVAETSMHYKMRRHGFRQDSMWQTSRPLPPFSIRASESRVGVLPIGLGFLRQF 141

Query: 136 QNPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQFQFVKDLVDRLDHEVI 195
           + PTIFLK+SCDGDY+LP+++G  A+EKL+   ++  +E+CPDQFQFV  +VD+L +EV 
Sbjct: 142 KQPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVSAVVDKLGYEVK 201

Query: 196 MVRITERVVSTYFAKLYISQPGESGIISLDARPSDAINVANRCKAPIYVSKQIVFTDAIR 255
           MV++T R+V+TY+A L + +PG+   I +D+RPSDAINVA  C+APIYV+K IV  +AI+
Sbjct: 202 MVKLTGRIVNTYYASLCLGKPGDIEAICIDSRPSDAINVARACQAPIYVNKAIVLEEAIK 261

Query: 256 LGYGMGGVLKKKATYDVLLDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLAN 315
           +GYG G     K  ++V+LDS  DGPD +++EL ++R+M  A K ER+ DAA+WRD+L N
Sbjct: 262 IGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRDRLKN 320

Query: 316 LRKSS 320
           L+ SS
Sbjct: 321 LQNSS 325


>AT5G66050.2 | Symbols:  | Wound-responsive family protein |
           chr5:26412333-26413830 REVERSE LENGTH=246
          Length = 246

 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 164/231 (70%), Gaps = 1/231 (0%)

Query: 90  HYHMWRQRFQPELQRKSRRPSIPLSVQEKTSRSYNNLSRQGFLQRFQNPTIFLKVSCDGD 149
           HY M R  F+ +   ++ RP  P S++   SR        GFL++F+ PTIFLK+SCDGD
Sbjct: 2   HYKMRRHGFRQDSMWQTSRPLPPFSIRASESRVGVLPIGLGFLRQFKQPTIFLKISCDGD 61

Query: 150 YILPIVLGKIAIEKLIGAEVEQESEDCPDQFQFVKDLVDRLDHEVIMVRITERVVSTYFA 209
           Y+LP+++G  A+EKL+   ++  +E+CPDQFQFV  +VD+L +EV MV++T R+V+TY+A
Sbjct: 62  YLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVSAVVDKLGYEVKMVKLTGRIVNTYYA 121

Query: 210 KLYISQPGESGIISLDARPSDAINVANRCKAPIYVSKQIVFTDAIRLGYGMGGVLKKKAT 269
            L + +PG+   I +D+RPSDAINVA  C+APIYV+K IV  +AI++GYG G     K  
Sbjct: 122 SLCLGKPGDIEAICIDSRPSDAINVARACQAPIYVNKAIVLEEAIKIGYG-GRPQSAKPV 180

Query: 270 YDVLLDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLANLRKSS 320
           ++V+LDS  DGPD +++EL ++R+M  A K ER+ DAA+WRD+L NL+ SS
Sbjct: 181 FNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRDRLKNLQNSS 231


>AT1G19660.2 | Symbols:  | Wound-responsive family protein |
           chr1:6800361-6802240 REVERSE LENGTH=329
          Length = 329

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 117/203 (57%), Gaps = 8/203 (3%)

Query: 121 RSYNNLSRQGFLQRFQ-NPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQ 179
           R  +N  + G L  +  +  I LK+      +LPI++ ++    L+ A    +    P  
Sbjct: 120 RCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR-PTM 178

Query: 180 FQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGE-SGIISLDARPSDAINVANRC 238
           +Q VKD+VD++ +EV +VR+T RV   YFA+LY+S+ G+ S  +S D RPSDAIN+A RC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 239 KAPIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPD----VVAQELSMMRSM 294
           K PI V+K + ++D +R+    G + K+    D LL + LD P+       +E  ++R+M
Sbjct: 239 KVPIQVNKYLAYSDGMRV-IDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNM 297

Query: 295 HTAIKMERFKDAAIWRDKLANLR 317
             A+  ER+ +AA WRDKL   +
Sbjct: 298 MQAVDEERYDEAAEWRDKLGKFQ 320


>AT1G19660.1 | Symbols:  | Wound-responsive family protein |
           chr1:6800361-6802240 REVERSE LENGTH=329
          Length = 329

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 117/203 (57%), Gaps = 8/203 (3%)

Query: 121 RSYNNLSRQGFLQRFQ-NPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQ 179
           R  +N  + G L  +  +  I LK+      +LPI++ ++    L+ A    +    P  
Sbjct: 120 RCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR-PTM 178

Query: 180 FQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGE-SGIISLDARPSDAINVANRC 238
           +Q VKD+VD++ +EV +VR+T RV   YFA+LY+S+ G+ S  +S D RPSDAIN+A RC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 239 KAPIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPD----VVAQELSMMRSM 294
           K PI V+K + ++D +R+    G + K+    D LL + LD P+       +E  ++R+M
Sbjct: 239 KVPIQVNKYLAYSDGMRV-IDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNM 297

Query: 295 HTAIKMERFKDAAIWRDKLANLR 317
             A+  ER+ +AA WRDKL   +
Sbjct: 298 MQAVDEERYDEAAEWRDKLGKFQ 320


>AT1G75380.3 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 8/203 (3%)

Query: 121 RSYNNLSRQGFLQRFQ-NPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQ 179
           R  +N  + G L  +  +P I LK+      +LPI++ ++    L+ A    +    P  
Sbjct: 116 RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR-PTM 174

Query: 180 FQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGE-SGIISLDARPSDAINVANRC 238
           +Q VK++VD++ +EV +VR+T+RV   YFA+L++S+ G  S  +S D RPSDAIN+A RC
Sbjct: 175 YQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRC 234

Query: 239 KAPIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPDVVA----QELSMMRSM 294
           K PI V+K + ++D +R+    G +       D LL +  D P+  A    +E +++  M
Sbjct: 235 KIPIQVNKYLAYSDGMRV-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKM 293

Query: 295 HTAIKMERFKDAAIWRDKLANLR 317
             A+  ER+ +AA WRDKL   R
Sbjct: 294 MQAVDEERYDEAAEWRDKLGQFR 316


>AT1G75380.2 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 8/203 (3%)

Query: 121 RSYNNLSRQGFLQRFQ-NPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQ 179
           R  +N  + G L  +  +P I LK+      +LPI++ ++    L+ A    +    P  
Sbjct: 116 RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR-PTM 174

Query: 180 FQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGE-SGIISLDARPSDAINVANRC 238
           +Q VK++VD++ +EV +VR+T+RV   YFA+L++S+ G  S  +S D RPSDAIN+A RC
Sbjct: 175 YQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRC 234

Query: 239 KAPIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPDVVA----QELSMMRSM 294
           K PI V+K + ++D +R+    G +       D LL +  D P+  A    +E +++  M
Sbjct: 235 KIPIQVNKYLAYSDGMRV-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKM 293

Query: 295 HTAIKMERFKDAAIWRDKLANLR 317
             A+  ER+ +AA WRDKL   R
Sbjct: 294 MQAVDEERYDEAAEWRDKLGQFR 316


>AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 8/203 (3%)

Query: 121 RSYNNLSRQGFLQRFQ-NPTIFLKVSCDGDYILPIVLGKIAIEKLIGAEVEQESEDCPDQ 179
           R  +N  + G L  +  +P I LK+      +LPI++ ++    L+ A    +    P  
Sbjct: 116 RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR-PTM 174

Query: 180 FQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGE-SGIISLDARPSDAINVANRC 238
           +Q VK++VD++ +EV +VR+T+RV   YFA+L++S+ G  S  +S D RPSDAIN+A RC
Sbjct: 175 YQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRC 234

Query: 239 KAPIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPDVVA----QELSMMRSM 294
           K PI V+K + ++D +R+    G +       D LL +  D P+  A    +E +++  M
Sbjct: 235 KIPIQVNKYLAYSDGMRV-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKM 293

Query: 295 HTAIKMERFKDAAIWRDKLANLR 317
             A+  ER+ +AA WRDKL   R
Sbjct: 294 MQAVDEERYDEAAEWRDKLGQFR 316