Miyakogusa Predicted Gene
- Lj2g3v1645560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1645560.1 tr|I1LJW2|I1LJW2_SOYBN Nucleolar GTP-binding
protein 1 OS=Glycine max GN=Gma.3499 PE=3 SV=1,89.48,0,NOGCT,NOG,
C-terminal; NOG1,Nucleolar GTP-binding protein 1, Rossman-fold domain;
coiled-coil,NULL; ,CUFF.37593.1
(671 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50920.1 | Symbols: | Nucleolar GTP-binding protein | chr1:1... 941 0.0
AT1G10300.1 | Symbols: | Nucleolar GTP-binding protein | chr1:3... 818 0.0
AT1G80770.1 | Symbols: PDE318 | P-loop containing nucleoside tri... 129 1e-29
AT1G80770.2 | Symbols: PDE318 | P-loop containing nucleoside tri... 126 5e-29
AT3G23860.1 | Symbols: | GTP-binding protein-related | chr3:861... 91 2e-18
AT4G39520.1 | Symbols: | GTP-binding protein-related | chr4:183... 51 3e-06
AT1G78010.1 | Symbols: | tRNA modification GTPase, putative | c... 49 9e-06
>AT1G50920.1 | Symbols: | Nucleolar GTP-binding protein |
chr1:18870555-18872570 FORWARD LENGTH=671
Length = 671
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/676 (68%), Positives = 518/676 (76%), Gaps = 10/676 (1%)
Query: 1 MVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHD 60
MVQYNFK+ITVVPNGK+F+DIILSRTQRQTPTVVHKGY I+RLRQFYMRKVKYTQ NFH
Sbjct: 1 MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHA 60
Query: 61 KLSAIIDEFPRMDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYG 120
KLSAIIDEFPR++ IHPFYGDLLHVLYNKDHYKLALGQ+NTARNLI KI+KDYVKLLKYG
Sbjct: 61 KLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYG 120
Query: 121 DSLYRCKSLKVAALGRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLICGYPNVG 180
DSLYRCK LKVAALGRMCTVLKRI PSLAYLEQIRQHMARLP+IDPNTRTVLICGYPNVG
Sbjct: 121 DSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVG 180
Query: 181 KSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240
KSSF+NK+TRADV+VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS
Sbjct: 181 KSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240
Query: 241 ITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIIVCNKTDLQPLEGIS 300
ITALAHLRAA+LFFLDISGSCGY+IAQQAALFHSIKSLF+NKPL+IVCNKTDL P+E IS
Sbjct: 241 ITALAHLRAAVLFFLDISGSCGYTIAQQAALFHSIKSLFMNKPLVIVCNKTDLMPMENIS 300
Query: 301 EEDMKLVMEMKSEALKTIVGQGGEATDDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVE 360
EED KL+ EMKSEA+KT +G ++ VLL MSTLT+EGV++VKNAACERLL+QRVE
Sbjct: 301 EEDRKLIEEMKSEAMKTAMG-----ASEEQVLLKMSTLTDEGVMSVKNAACERLLDQRVE 355
Query: 361 IKMKSKKINDCLNRFHVAIPKPRDQKERPPCIPXXXXXXXXXXXXXXXXXXXXXDLEEEN 420
KMKSKKIND LNRFHVAIPKPRD ER PCIP DLEEEN
Sbjct: 356 AKMKSKKINDHLNRFHVAIPKPRDSIERLPCIPQVVLEAKAKEAAAMEKRKTEKDLEEEN 415
Query: 421 GGAGVYSMNLRKHYILANDEWKEDILPEILDGHNVYDYIDVDIXXXXXXXXXXXXXXXXX 480
GGAGVYS +L+K+YIL +DEWKEDI+PEILDGHNV D+ID DI
Sbjct: 416 GGAGVYSASLKKNYILQHDEWKEDIMPEILDGHNVADFIDPDILQRLAELEREEGIREAG 475
Query: 481 XXDDDFEIDGTGLAPEQLATLAEIRKRKKLLIQQHRIKKSTAESRPIVPRKFDKDKKFTS 540
+ D E+D L+ EQL L+EIRK+K +LI+ HR+KK+ A++R VPRKFDKDKK+T+
Sbjct: 476 VEEADMEMDIEKLSDEQLKQLSEIRKKKAILIKNHRLKKTVAQNRSTVPRKFDKDKKYTT 535
Query: 541 ERMGRDFSSVGLDPTLAIXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXTPXXXXXXXXXX 600
+RMGR+ S++GLDP+ A+ +
Sbjct: 536 KRMGRELSAMGLDPSSAMDRARSKSRGRKRDRSEDAGNDAMDVDDEQQSNKKQRVRSKSR 595
Query: 601 XXXXXX-----PPNEVVPGEGFRDSXXXXXXXXXXXXXXXXRNKEARRGEADRVIPNLKP 655
P +EVVPGEGF+DS R+K ARRGEADRVIP L+P
Sbjct: 596 AMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARRGEADRVIPTLRP 655
Query: 656 KHLYSGKRSTGKTDRR 671
KHL+SGKR GKTDRR
Sbjct: 656 KHLFSGKRGKGKTDRR 671
>AT1G10300.1 | Symbols: | Nucleolar GTP-binding protein |
chr1:3378142-3380226 FORWARD LENGTH=687
Length = 687
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/678 (61%), Positives = 489/678 (72%), Gaps = 27/678 (3%)
Query: 1 MVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHD 60
MV+YNFKKITVVPNGK F+DI+LSRTQRQTPTVVHKG I +LR FYMRKVK+T+ NF++
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNE 89
Query: 61 KLSAIIDEFPRMDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYG 120
KLSAIIDEFPR+ +I PFY DLLHVLYNKDHYKLALGQ+NTA+N I KIA DYVKLLK+G
Sbjct: 90 KLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHG 149
Query: 121 DSLYRCKSLKVAALGRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLICGYPNVG 180
DSLYRCK LKVAALGRMCTV+K I PSLAYLEQ+RQH+ARLP+IDPNTRT+LICG PNVG
Sbjct: 150 DSLYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDPNTRTLLICGCPNVG 209
Query: 181 KSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240
KSSF+NK+TRADV VQPYAFTTKSLF+GHTDYK LRYQVIDTPG+LDR EDRNIIE+CS
Sbjct: 210 KSSFMNKVTRADVAVQPYAFTTKSLFLGHTDYKCLRYQVIDTPGLLDREIEDRNIIELCS 269
Query: 241 ITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIIVCNKTDLQPLEGIS 300
ITALAH+RAA+LFFLDISGSCGY+IAQQA+LFH+IKS+F NKPL+IVCNKTDL P+E +S
Sbjct: 270 ITALAHIRAAVLFFLDISGSCGYTIAQQASLFHNIKSVFKNKPLVIVCNKTDLMPMENLS 329
Query: 301 EEDMKLVMEMKSEALKTIVGQGGEATDDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVE 360
EED KL+ EMK EA+KT +G EA V+L MSTLTEEGV++ RLL+QRV
Sbjct: 330 EEDRKLIEEMKDEAMKTEMGASEEA-----VILEMSTLTEEGVMS-------RLLDQRVA 377
Query: 361 IKMKSKKINDCLNRFHVAIPKPRDQKERPPCIPXXXXXXXXXXXXXXXXXXXXXDLEEEN 420
KMKSKKI D LNRFHVA+PK RD +ER PCIP DLE+EN
Sbjct: 378 AKMKSKKIGDHLNRFHVAMPKSRDDQERLPCIP--------QVAGEKEKRKTEKDLEDEN 429
Query: 421 GGAGVYSMNLRKHYILANDEWKEDILPEILDGHNVYDYIDVDIXXXXXXXXXXXXXXXXX 480
GGAGVYS +L+K+YILA +EWK+DI+PEI D HNV D++D DI
Sbjct: 430 GGAGVYSASLKKNYILAKEEWKDDIIPEICDCHNVADFVDSDILNRLEELTSEESLRKAE 489
Query: 481 XXDDDFEIDGTGLAPEQLATLAEIRKRKKLLIQQHRIKKSTAESRPIVPRKFDKDKKFTS 540
+ FEI+G L ++ LA IRK+K LLI++ R+KKS A++R VPRKFDKDKKFT
Sbjct: 490 EEEVGFEIEGEELTEKEKNDLAAIRKKKALLIEESRLKKSNAQNRAAVPRKFDKDKKFTR 549
Query: 541 ERMGRDFSSVGLDPTLAIXXXXXXXXXXXXXXXXXXAXXXX-------XXXXXXXTPXXX 593
+RMGR+ SS+GLDP+ A+ +
Sbjct: 550 KRMGRELSSLGLDPSSALNRARSKSRGRKRERYDDLSNDAMDVDVNDDEQHKKKKMCLRS 609
Query: 594 XXXXXXXXXXXXXPPNEVVPGEGFRDSXXXXXXXXXXXXXXXXRNKEARRGEADRVIPNL 653
PP+EVVPGEGF+DS R+K ARRGEADRVIP+L
Sbjct: 610 KSRSLSRSRSVSRPPHEVVPGEGFKDSSQKIKAIKIGHKSHRKRDKAARRGEADRVIPSL 669
Query: 654 KPKHLYSGKRSTGKTDRR 671
KPKHL+SGKR GK RR
Sbjct: 670 KPKHLFSGKRGNGKNQRR 687
>AT1G80770.1 | Symbols: PDE318 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:30355266-30357786 FORWARD LENGTH=451
Length = 451
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 5/290 (1%)
Query: 6 FKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYA--ISRLRQFYMRKVKYTQQNFHDKLS 63
F+K+ +V D L +++R PT KG A R R +++ + L
Sbjct: 92 FQKLPMVMPSIDLYASALRKSKRVQPT---KGIANIAKRERNRGAKQLDAFMKELALPLK 148
Query: 64 AIIDEFPRMDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSL 123
++ FPR +HP+ L+ + Y+ LG+++ R + + K++ L S
Sbjct: 149 GYMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKALSK 208
Query: 124 YRCKSLKVAALGRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLICGYPNVGKSS 183
+ + ++ V ++ ++ L I + + +P +D T+ + G PNVGKSS
Sbjct: 209 KEAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLVGAPNVGKSS 268
Query: 184 FINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243
+ ++ E+ Y FTT+ + +GH Y R+QV DTPG+L R EDRN +E ++
Sbjct: 269 LVRILSTGKPEICNYPFTTRGILMGHIVLNYQRFQVTDTPGLLRRCDEDRNNLEKLTLAV 328
Query: 244 LAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIIVCNKTDL 293
L HL A+L+ D++G CG S + Q ++ +K F + I +K DL
Sbjct: 329 LTHLPTAVLYVHDLTGECGTSPSDQFQIYKEMKERFKDYLWIDAVSKCDL 378
>AT1G80770.2 | Symbols: PDE318 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:30355717-30357786 FORWARD LENGTH=355
Length = 355
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 5/279 (1%)
Query: 17 DFIDIILSRTQRQTPTVVHKGYA--ISRLRQFYMRKVKYTQQNFHDKLSAIIDEFPRMDD 74
D L +++R PT KG A R R +++ + L ++ FPR
Sbjct: 7 DLYASALRKSKRVQPT---KGIANIAKRERNRGAKQLDAFMKELALPLKGYMESFPRKKL 63
Query: 75 IHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKSLKVAAL 134
+HP+ L+ + Y+ LG+++ R + + K++ L S + +
Sbjct: 64 LHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKALSKKEAEERLSEGV 123
Query: 135 GRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLICGYPNVGKSSFINKITRADVE 194
++ V ++ ++ L I + + +P +D T+ + G PNVGKSS + ++ E
Sbjct: 124 EKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLVGAPNVGKSSLVRILSTGKPE 183
Query: 195 VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFF 254
+ Y FTT+ + +GH Y R+QV DTPG+L R EDRN +E ++ L HL A+L+
Sbjct: 184 ICNYPFTTRGILMGHIVLNYQRFQVTDTPGLLRRCDEDRNNLEKLTLAVLTHLPTAVLYV 243
Query: 255 LDISGSCGYSIAQQAALFHSIKSLFLNKPLIIVCNKTDL 293
D++G CG S + Q ++ +K F + I +K DL
Sbjct: 244 HDLTGECGTSPSDQFQIYKEMKERFKDYLWIDAVSKCDL 282
>AT3G23860.1 | Symbols: | GTP-binding protein-related |
chr3:8616953-8617645 REVERSE LENGTH=230
Length = 230
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 6 FKKIT-VVPNGKDFIDIILSRTQRQTPT-------VVHKGYAISRLRQFYMRKVKYTQQN 57
FKKI+ VVP DF I R + Q P V H IS +RQ Y KV
Sbjct: 6 FKKISAVVPTELDFDRAI--RFEYQIPNCTLIPDRVCHDD--ISDIRQKYAVKVMSAGTT 61
Query: 58 FHDKLSAIIDEFPRMDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLL 117
+KL+ ++ EFP + + P Y LLH YN HY A+ Q++ + L+ ++ +YV LL
Sbjct: 62 LSNKLNDVLHEFPCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLL 121
Query: 118 KYG---DSLYRCKSLKVAALGRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLIC 174
+ DS +C+SL V AL RM T K P+L L+Q+R+ MA + D T L+
Sbjct: 122 RKDDDCDSRDKCRSLGVTALARMLTFAKSCIPALNLLDQVREFMASVE--DDAAATSLVN 179
Query: 175 GYPNV 179
Y +V
Sbjct: 180 KYSDV 184
>AT4G39520.1 | Symbols: | GTP-binding protein-related |
chr4:18371329-18374000 REVERSE LENGTH=369
Length = 369
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 171 VLICGYPNVGKSSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227
V + G+P+VGKS+ +NK+T EV Y FTT + G Y+ + Q++D PGI++
Sbjct: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIE 124
>AT1G78010.1 | Symbols: | tRNA modification GTPase, putative |
chr1:29333535-29336297 FORWARD LENGTH=560
Length = 560
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 171 VLICGYPNVGKSSFINKITRAD-VEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I G PNVGKSS +N ++++ V A TT+ + + + + ++DT GI
Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAGIR--- 376
Query: 230 FEDRNIIEMCSIT-ALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIIVC 288
E +I+E + + + A + + +S G++ + L I+S +KP+I+V
Sbjct: 377 -ETNDIVEKIGVERSETAAKVADVIIMAVSAVEGWT-EEDTELLRKIQS---DKPMILVM 431
Query: 289 NKTDLQPLEGISE-EDMKLVMEM--KSEALKTIVGQGGEATDD 328
NK D P + ED + E+ KS + GQG E +D
Sbjct: 432 NKIDCAPPGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEELED 474