Miyakogusa Predicted Gene

Lj2g3v1644370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1644370.1 CUFF.37581.1
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17200.1 | Symbols: DSK2 | ubiquitin family protein | chr2:74...   327   1e-89
AT2G17190.1 | Symbols:  | ubiquitin family protein | chr2:747827...   306   1e-83

>AT2G17200.1 | Symbols: DSK2 | ubiquitin family protein |
           chr2:7482133-7485090 REVERSE LENGTH=551
          Length = 551

 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 204/364 (56%), Positives = 242/364 (66%), Gaps = 33/364 (9%)

Query: 1   MNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGF 60
           MNNPQM+EL+DRNPEL H+LNDPS LRQTLEA RNPE+MREMMRNTDRAMSNIES PEGF
Sbjct: 195 MNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNIESMPEGF 254

Query: 61  NMLRRMYENVQEPFLNATTMAGNTGND-------------GVRNQ---STNPSTTNSEAT 104
           NMLRRMYENVQEP +NATTM+GN GN+             GV  Q   ++N S+T +  T
Sbjct: 255 NMLRRMYENVQEPLMNATTMSGNAGNNTGSNPFAALLGNQGVTTQGSDASNNSSTPNAGT 314

Query: 105 SPVPNTNPLPNPWSSTGTGGAQGNTRRTTAGGDARQ---------QALTGLGGLGVPDLE 155
             +PN NPLPNPW +  TGG      RT  GGDAR           +L GLGGLG+   +
Sbjct: 315 GTIPNANPLPNPWGA--TGGQTTAPGRTNVGGDARSPGLGGLGGLGSLGGLGGLGMLGAD 372

Query: 156 GMMGGMPDPAMLTQLMQNPAISQMMQSILSNPQTMNQILGLNTEQRGMPDLN-SLRDVMQ 214
             +G  PD + L+QL+QNPAISQMMQS+ SNPQ MNQ++ LN + R M D N  LR++MQ
Sbjct: 373 SPLGATPDASQLSQLLQNPAISQMMQSVFSNPQYMNQLMSLNPQLRSMLDSNPQLREMMQ 432

Query: 215 NPEFLRLFSSPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNNMGLEMLSSMF 274
           NP+FLR FSSPE                                    NN GL++L +MF
Sbjct: 433 NPDFLRQFSSPEMMQQMMTLQQSLSQNRNTASQDAGQTGAATG-----NNGGLDLLMNMF 487

Query: 275 GGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLG 334
           G LGAG L+  N+SN PPE+ YATQL QLQEMGF+D  ENIRAL+AT+GNV+AAVERLLG
Sbjct: 488 GSLGAGGLSGTNQSNVPPEERYATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLLG 547

Query: 335 NTGQ 338
           + GQ
Sbjct: 548 SIGQ 551


>AT2G17190.1 | Symbols:  | ubiquitin family protein |
           chr2:7478272-7481361 REVERSE LENGTH=538
          Length = 538

 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 188/355 (52%), Positives = 227/355 (63%), Gaps = 23/355 (6%)

Query: 1   MNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGF 60
           MNNPQM+EL+DRNPEL H+LNDPS LRQTLEA RNPE+MREMMRNTDRAMSNIES PEGF
Sbjct: 190 MNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNIESMPEGF 249

Query: 61  NMLRRMYENVQEPFLNATTMAGNTGND-------------GVRNQSTNPSTTNSE--ATS 105
           NMLRRMYENVQEP +NATTM+ N GN+             GV  Q ++ S   S   A +
Sbjct: 250 NMLRRMYENVQEPLMNATTMSENAGNNTSSNPFAALLGNQGVTTQGSDTSNNISAPNAET 309

Query: 106 PVPNTNPLPNPWSST-GTGGAQGNTRRTTAGGDARQQALTGLGGLGVPDLEGMMGGMPDP 164
             PN NPLPNPW +T G   A G T     G                   +  +G  PD 
Sbjct: 310 GTPNANPLPNPWGATAGQTTAPGRTNAGLGGLGGLGGLGGLGMLGA----DSPLGATPDA 365

Query: 165 AMLTQLMQNPAISQMMQSILSNPQTMNQILGLNTEQRGMPDLN-SLRDVMQNPEFLRLFS 223
           + L+Q++QNPA+SQMMQS+LSNPQ MNQ++ LN + R M D+N  LR++MQNP+FLR FS
Sbjct: 366 SQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNPQLRSMLDMNPQLREMMQNPDFLRQFS 425

Query: 224 SPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNNMGLEMLSSMFGGLGAGSLA 283
           SPE                                  + NN GL++L +MFG LGAG L+
Sbjct: 426 SPEM--MQQMMSLQQSLFSQNRNTAGQDPTQTGAATGTANNGGLDLLMNMFGSLGAGGLS 483

Query: 284 VPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 338
             N+ N PPE+ +ATQL QLQEMGF+D  ENIRAL+AT+GNV+AAVERLLG+ GQ
Sbjct: 484 GTNQPNVPPEERFATQLQQLQEMGFYDRAENIRALLATNGNVNAAVERLLGSIGQ 538