Miyakogusa Predicted Gene
- Lj2g3v1643230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1643230.1 CUFF.37596.1
(912 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 308 1e-83
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 299 7e-81
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 290 3e-78
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 286 4e-77
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 270 4e-72
AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:1... 264 2e-70
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 234 2e-61
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 175 1e-43
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:979424... 174 2e-43
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 84 6e-16
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 84 6e-16
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 80 6e-15
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 79 2e-14
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 79 2e-14
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 79 2e-14
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 79 2e-14
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 79 2e-14
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 79 2e-14
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 76 1e-13
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 75 2e-13
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 74 6e-13
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 72 2e-12
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 71 3e-12
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 68 3e-11
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 67 7e-11
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 66 1e-10
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 65 2e-10
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 63 1e-09
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 63 1e-09
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 62 1e-09
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 62 2e-09
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 58 3e-08
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 56 1e-07
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 56 1e-07
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 56 1e-07
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 55 2e-07
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 55 2e-07
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 54 4e-07
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 54 5e-07
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 54 5e-07
AT3G02060.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 54 5e-07
AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 54 5e-07
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 7e-07
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 7e-07
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 54 7e-07
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 53 8e-07
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 53 9e-07
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 52 2e-06
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 3e-06
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 4e-06
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 4e-06
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 51 4e-06
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 51 5e-06
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 5e-06
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 51 5e-06
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 50 6e-06
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 50 6e-06
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 50 8e-06
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 50 8e-06
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 50 8e-06
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 50 9e-06
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 308 bits (789), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 253/432 (58%), Gaps = 29/432 (6%)
Query: 10 NYFGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLM 69
N FG S +R QK+ RD +V+MA G GKSLCYQ+P ++ T +VVSPL+SL+
Sbjct: 83 NVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLI 142
Query: 70 QDQVMALKERGIKAEYLGSA---QKDFTVQTKAEHGQFD--ILFMTPEKACTISTSFWSN 124
QDQVM L GI A L S + + V E G+ D IL++TPEK S F S
Sbjct: 143 QDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSK-SKRFMSK 201
Query: 125 LLK---AG-ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRF 180
L K AG +SL ++DEAHC S+WGHDFR +YKNL L++ +VP V LTATAT+KV+
Sbjct: 202 LEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQN 261
Query: 181 DIIKSLKMNNPYVLVGSFDRANLFYGVKPFSR-GQSFIDELVREISKEVDSGTSTIIYCT 239
D+I+ L + V S +R NLFY V+ S G+ +DE+ I + + S I+YC
Sbjct: 262 DLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCF 321
Query: 240 TIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPN 299
+ K+ EQI+ L E GI A YH M+ RE+ H + ++++Q++V T+AFGMGI+KP+
Sbjct: 322 SRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPD 381
Query: 300 IRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGE---FYCGDIKSEIQR 356
+R VIH+ KS+E+YYQESGR GRDG+PS C L++ D + FY
Sbjct: 382 VRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFY---------E 432
Query: 357 RAIMESLRAAEHYCVLPT-CRRKFLLEYFGENFPADRC-GNCDNCLVAK--KERDLSREV 412
+ +++L YC T CRR +FGE P+ C G CDNC ++ KE D+S
Sbjct: 433 YSGLQNLYDIVRYCQSKTKCRRSAFFRHFGE--PSQDCNGMCDNCALSSEVKEVDVSDLS 490
Query: 413 FLLMACIHSCKG 424
L+++ + +
Sbjct: 491 KLVVSMVQETQA 502
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 299 bits (765), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 232/414 (56%), Gaps = 24/414 (5%)
Query: 2 DAMSSVLKNYFGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIV 61
+A+ +L+ +FG +DFR Q + RDC +M TG GKS+CYQ+P L +V
Sbjct: 22 EALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLV 81
Query: 62 VSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFD-------ILFMTPEKA 114
VSPLI+LM++QVMALKE+GI AEYL S Q V+ K H D +L++TPE
Sbjct: 82 VSPLIALMENQVMALKEKGIAAEYLSSTQATH-VKNKI-HEDLDSGKPSVRLLYVTPELI 139
Query: 115 CTISTSFWSNLLKAG----ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGL 170
T F L K ++L A+DEAHCIS WGHDFR Y+ L LR L +VP + L
Sbjct: 140 AT--KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLAL 197
Query: 171 TATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDS 230
TATA KV+ D+I SL + NP VL SF+R N+FY V R + +D ++ + S
Sbjct: 198 TATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKS 253
Query: 231 --GTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVAT 288
IIYC + +S L+ GI + YH +N K R ++ + QI+VAT
Sbjct: 254 CGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVAT 313
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCG 348
+AFGMGIDK ++R V H+ PKS+ES+YQESGR GRD +PS LYY D K E+
Sbjct: 314 VAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLR 373
Query: 349 DIKSEIQRRAIMES--LRAAEHYCVLPTCRRKFLLEYFGENFPADRC-GNCDNC 399
+ +++ + + YC CRRK +LE FGE FP +C CD C
Sbjct: 374 NSENKKSSSSKKPTSDFEQIVTYCEGSGCRRKKILESFGEEFPVQQCKKTCDAC 427
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase L4B
| chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 290 bits (743), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 201/643 (31%), Positives = 319/643 (49%), Gaps = 48/643 (7%)
Query: 12 FGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQD 71
FG FRP Q++ D V+M TG GKSL YQ+P L+ +V+SPL+SL+QD
Sbjct: 465 FGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQD 524
Query: 72 QVMALKERGIKAEYLGSA-----QKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNL- 125
Q+M L + I A L + Q + + +E ++ +L++TPEK S S +L
Sbjct: 525 QIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAK-SESLLRHLE 583
Query: 126 ---LKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDI 182
++ ++ F +DEAHC+S+WGHDFR +Y+ L L+ +P + LTATAT V+ D+
Sbjct: 584 ILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDV 643
Query: 183 IKSLKMNNPYVLVGSFDRANLFYGVKP-FSRGQSFIDELVREISKEVDSGTSTIIYCTTI 241
+++L + N V SF+R NL+Y V P ++ ID+ +RE D IIYC +
Sbjct: 644 VQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRE--NHFDE--CGIIYCLSR 699
Query: 242 KDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIR 301
D E+++++L G KA YHG M+ R + + +DE+ I+ AT+AFGMGI+KP++R
Sbjct: 700 MDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVR 759
Query: 302 KVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF-------AKGEFYCGDIKSEI 354
VIH+ PKSIE Y+QE GR GRDG S C LYY+ D+ ++G G +K
Sbjct: 760 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGY 819
Query: 355 QRRAI--------MESLRAAEHYCVLPT-CRRKFLLEYFGENFPADRCGN-CDNCLVAK- 403
+A E+L YC CRR L + GE F + C N CDNC +K
Sbjct: 820 NCKASSGRMLETNTENLLRMVSYCENEVDCRRFLQLVHLGEKFDSTNCKNTCDNCSSSKI 879
Query: 404 -KERDLSREVFLLMACIHSCKGNWGLNIPIDILRGSRAKKIIDAQYDKLPLHGLGKTYPA 462
++D++ L+A + + ++I RGS + + + D L LHG GK
Sbjct: 880 LIDKDVTVIARQLVALVKLTGERFSSAHIVEIYRGSLNQSVKRNRQDTLHLHGAGKHLTK 939
Query: 463 NWWKALGHQLICQGYLKETF--IDIYRAISVSSKGEEFLASCRPDYQPPLILSLTTEMLG 520
+ + H L+ + L E ++Y ++S K A+ + + + +
Sbjct: 940 SEASRILHYLVTEDILAEGVKKSELYGSVSSLLKVNRSKAASLLSGGQSITMRFPSTIKV 999
Query: 521 EEENGSTEDFKIL-----------ATSESGGFSXXXXXXXXXXXXXXXXXARSVGTAPYA 569
+++ ST + + A + S + + A Y
Sbjct: 1000 SKQSKSTANPAKVPLKQTTLPMAKAAPQDSNLSGILLTALKNLRTDIVKESPDLVMA-YH 1058
Query: 570 LCGDQTIKKIALTRPSTKARLANIDGVNQHLLTRYGDHFLGVI 612
+ G+ T+K+I+ P TK L +I+G+ + +++YGD L I
Sbjct: 1059 IFGNATLKEISKRLPRTKEELLDINGLGKAKVSKYGDRLLETI 1101
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 286 bits (733), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 199/651 (30%), Positives = 315/651 (48%), Gaps = 51/651 (7%)
Query: 9 KNYFGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISL 68
K FG FRP Q++ D V+M TG GKSL YQ+P L+ +V+SPL+SL
Sbjct: 446 KKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSL 505
Query: 69 MQDQVMALKERGIKAEYLGSAQKDFTVQTK------AEHGQFDILFMTPEKACTIST--S 120
+QDQ+M L + I A L SA ++ Q K +EH ++ +L++TPEK +
Sbjct: 506 IQDQIMNLLQANIPAASL-SAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLR 564
Query: 121 FWSNLLKAGI-SLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVR 179
NL G+ + F +DEAHC+S+WGHDFR +Y++L L+ +P + LTATAT V+
Sbjct: 565 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVK 624
Query: 180 FDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRG-QSFIDELVREISKEVDSGTSTIIYC 238
D++++L + N V SF+R NL+Y V P ++ ID+ + KE IIYC
Sbjct: 625 EDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFI----KENHFDECGIIYC 680
Query: 239 TTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKP 298
+ D E++S+ L E G KA YHG M + R + +DE+ I+ AT+AFGMGI+KP
Sbjct: 681 LSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKP 740
Query: 299 NIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF-------AKGEFYCGDIK 351
++R VIH+ PKSIE Y+QE GR GRDG S C LYY GD+ ++G +
Sbjct: 741 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMA 800
Query: 352 SEIQRRAI--------MESLRAAEHYCVLPT-CRRKFLLEYFGENFPADRC-GNCDNCLV 401
+ R A E+L YC CRR L + GE F + C CDNC
Sbjct: 801 TGYNRVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEKFDSTNCKKTCDNCCS 860
Query: 402 AKK--ERDLSREVFLLMACIHSCKGNWGLNIPIDILRGSRAKKIIDAQYDKLPLHGLGKT 459
++ ++D++ L+ + + +++ RGS + + +++ L HG GK
Sbjct: 861 SQSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKH 920
Query: 460 YPANWWKALGHQLICQGYLKETF--IDIYRAISVSSKGEEFLASCRPDYQPPLILSL--T 515
+ H L+ + L E D+Y ++S + A+ +++ +
Sbjct: 921 LSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLQVNNAKATILFSGSQTIVMKFPSS 980
Query: 516 TEMLGEEENGSTEDFKILATSESGGFSXXXXXXXXXXXXXXXXXARSV------------ 563
++L + G+T L + + ++
Sbjct: 981 VKVLKPSKQGATAAKGPLTSEKQSTLPLTTEDAPPKDVNLSANMYTALRKLRTALVKEAP 1040
Query: 564 -GTAPYALCGDQTIKKIALTRPSTKARLANIDGVNQHLLTRYGDHFLGVIQ 613
G Y + + T+++I+ P TK L I+G+ + +++YGD L I+
Sbjct: 1041 DGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDQLLETIE 1091
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 167/413 (40%), Positives = 233/413 (56%), Gaps = 36/413 (8%)
Query: 12 FGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQD 71
FG FRP Q +DC V+M TG GKSLCYQ+P + IV+SPL+SL+QD
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 72 QVMALKER-GIKAEYLGSAQKDFTV-----QTKAEHGQFDILFMTPEKACTISTSFWSNL 125
Q++AL + GI A +L S Q + + ++ +L++TPEK S+SF L
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAG-SSSFLETL 320
Query: 126 L----KAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFD 181
K ++ F VDEAHC+S+WGHDFR +Y+ L L+ VP + LTATATE V D
Sbjct: 321 RCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQD 380
Query: 182 IIKSLKMNNPYVLVGSFDRANLFYGV-----KPFSRGQSFIDELVREISKEVDSGTSTII 236
++KSL++ VL SFDR NL Y V +P + Q EL+R+ K+ S I+
Sbjct: 381 VLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQ----ELLRDRFKD----QSGIV 432
Query: 237 YCTTIKDVEQISKSLTE-AGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGI 295
YC + + ++K L E +K YH + K R + R + EV+I+ ATIAFGMGI
Sbjct: 433 YCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGI 492
Query: 296 DKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYC----GDIK 351
DK ++R VIH K++ESYYQESGR GRDG+ + C Y + DF++ C G +
Sbjct: 493 DKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSR--VVCMLRNGQGR 550
Query: 352 SEIQRRAIMESLRAAEHYCVLPT-CRRKFLLEYFGENFPADRCGN----CDNC 399
+ + ++ M + + YC L T CRR+ LLEYFGE+F C + CDNC
Sbjct: 551 NMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNC 603
>AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 |
chr1:11233174-11237412 FORWARD LENGTH=580
Length = 580
Score = 264 bits (675), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 220/369 (59%), Gaps = 29/369 (7%)
Query: 58 TGIVVSPLISLMQDQVMALKERGIKAEYLGSA---QKDFTVQTKAEHGQFD--ILFMTPE 112
T +VVSPL+SL+QDQVM L GI A L S + + V E G+ D IL++TPE
Sbjct: 6 TTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPE 65
Query: 113 KACTISTSFWSNLLK---AG-ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFV 168
K + S F S L K AG +SL ++DEAHC S+WGHDFR +YKNL L++ +VP V
Sbjct: 66 KV-SKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 124
Query: 169 GLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSR-GQSFIDELVREISKE 227
LTATAT+KV+ D+I+ L + V S +R NLFY V+ S G+ +DE+ I +
Sbjct: 125 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRES 184
Query: 228 VDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 287
+ S I+YC + K+ EQI+ L E GI A YH M+ RE+ H + ++++Q++V
Sbjct: 185 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVG 244
Query: 288 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGE--- 344
T+AFGMGI+KP++R VIH+ KS+E+YYQESGR GRDG+PS C L++ D +
Sbjct: 245 TVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMV 304
Query: 345 FYCGDIKSEIQRRAIMESLRAAEHYCVLPT-CRRKFLLEYFGENFPADRC-GNCDNCLVA 402
FY + +++L YC T CRR +FGE P+ C G CDNC ++
Sbjct: 305 FY---------EYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGE--PSQDCNGMCDNCALS 353
Query: 403 K--KERDLS 409
KE D+S
Sbjct: 354 SEVKEVDVS 362
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 186/342 (54%), Gaps = 24/342 (7%)
Query: 74 MALKERGIKAEYLGSAQKDFTVQTKAEHGQFD-------ILFMTPEKACTISTSFWSNLL 126
MALKE+GI AEYL S Q V+ K H D +L++TPE T F L
Sbjct: 1 MALKEKGIAAEYLSSTQATH-VKNKI-HEDLDSGKPSVRLLYVTPELIAT--KGFMLKLR 56
Query: 127 KAG----ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDI 182
K ++L A+DEAHCIS WGHDFR Y+ L LR L +VP + LTATA KV+ D+
Sbjct: 57 KLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDV 116
Query: 183 IKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDS--GTSTIIYCTT 240
I SL + NP VL SF+R N+FY V R + +D ++ + S IIYC
Sbjct: 117 IDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKSCGNICAIIYCLE 172
Query: 241 IKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNI 300
+ +S L+ GI + YH +N K R ++ + QI+VAT+AFGMGIDK ++
Sbjct: 173 RTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDV 232
Query: 301 RKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCGDIKSEIQRRAIM 360
R V H+ PKS+ES+YQESGR GRD +PS LYY D K E+ + +++ +
Sbjct: 233 RMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKK 292
Query: 361 ES--LRAAEHYCVLPTCRRKFLLEYFGENFPADRC-GNCDNC 399
+ YC CRRK +LE FGE FP +C CD C
Sbjct: 293 PTSDFEQIVTYCEGSGCRRKKILESFGEEFPVQQCKKTCDAC 334
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 180/345 (52%), Gaps = 10/345 (2%)
Query: 4 MSSVLKNYFGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVS 63
++ +L +G+ FR Q ++V+ TG+GKSLCYQ+P +++ +VVS
Sbjct: 257 LTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVS 316
Query: 64 PLISLMQDQVMALKERGIKAEYLGSAQK-DFTVQT--KAEHGQFDILFMTPEKACTISTS 120
PL+SLM DQ+ L IK L S+Q+ + +T K + G +LF++PE+ ++
Sbjct: 317 PLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPER--LLNVE 373
Query: 121 FWSNL-LKAGISLFAVDEAHCISEWGHDFRVEYKNLDK--LRSVLVEVPFVGLTATATEK 177
F S + +SL VDEAHC+SEW H+FR Y L L S L + +TATAT
Sbjct: 374 FLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTM 433
Query: 178 VRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIY 237
++ SL++ + ++ S R N V S D L+ S S I+Y
Sbjct: 434 TLQAVMSSLEIPSTNLIQKSQLRDNFELSVS-LSGANRMKDLLILMESPPYKEIRSIIVY 492
Query: 238 CTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDK 297
C + + ISK L + I A YH + K R F ++++++VAT+AFGMG+DK
Sbjct: 493 CKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDK 552
Query: 298 PNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAK 342
++ VIH+ P S+E Y QE GR GRDG S C L+Y + K
Sbjct: 553 GDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLK 597
>AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM |
chr5:9794244-9798637 REVERSE LENGTH=858
Length = 858
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 4 MSSVLKNYFGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVS 63
++S+L+N FG S R +Q++ +DC+V+ ATGSGKSLC+Q+P L+ K +V+S
Sbjct: 156 VNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVIS 215
Query: 64 PLISLMQDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWS 123
PLISLM DQ + L + A +LGS Q D ++ KA G + I+++ PE +
Sbjct: 216 PLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQK 275
Query: 124 NLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLV---------EVPFVGLTATA 174
GI+LFA+DEAHC+S+WGHDFR Y+ L LR +VP + LTATA
Sbjct: 276 LAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATA 335
Query: 175 TEKVRFDIIKSLKMNNPY-VLVGSFDRANLFYGVK 208
T V+ DI++SL ++ +++ SF R NL + VK
Sbjct: 336 TVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 136/274 (49%), Gaps = 28/274 (10%)
Query: 226 KEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIM 285
K+ D TIIY T K+ I+K L G+KA Y+ + K + H+ F +++Q++
Sbjct: 492 KQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVV 551
Query: 286 VATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEF 345
VATIAFGMGIDK N+RK+IHYG +S+E+YYQE+GR GRDG + C LY D ++
Sbjct: 552 VATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPT 608
Query: 346 YCGDIKSEIQRRAIMESLRAAEHYCV-LPTCRRKFLLEYFGENFPADRCGNCDNCLVAKK 404
+S+ Q + L Y + CR K L+EYFGE F + +C +CD C
Sbjct: 609 LLPSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKCNSCDVCTEGPP 668
Query: 405 E----RDLSREVFLLMACIHSCKGNWGLNIPIDI--LRGSRAKKI------------IDA 446
E R+ + +F ++ H N + P + L S+ K+ +
Sbjct: 669 ELVDVREEANLLFQVITAFHLQVDNDSEHAPYEDYGLGNSKQNKLSHKPNLLFFISKLRE 728
Query: 447 QYDKLPLHGLGKTYPANWWKALGHQLICQGYLKE 480
Q +K K WWK L + +GY+KE
Sbjct: 729 QCEKF------KETDCLWWKGLARIMEAEGYIKE 756
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 149/347 (42%), Gaps = 41/347 (11%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 307
Query: 63 SPLISL-MQDQVMALK---ERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L Q QV ALK I L G A K Q K DI+ TP + I
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKG--PQLKEIERGVDIVVATPGRLNDI 365
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + +S +DEA + + G + ++R ++ EVP + TAT
Sbjct: 366 LEMKRISLHQ--VSYLVLDEADRMLDMGFE--------PQIRKIVNEVPTKRQTLMYTAT 415
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDEL-----VREISKEV 228
++VR I L +N V +G+ D K ++ + + + +I +
Sbjct: 416 WPKEVR-KIAADLLVNPAQVNIGNVDE---LVANKSITQTIEVLAPMEKHSRLEQILRSQ 471
Query: 229 DSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVAT 288
+ G+ II+C+T + +Q++++LT A HG + R++ F ++VAT
Sbjct: 472 EPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
G+D +IR V++Y P +E Y GR GR G + + ++
Sbjct: 531 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFF 577
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 153/349 (43%), Gaps = 45/349 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 180 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 239
Query: 63 SPLISL-MQDQVMALK---ERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L Q QV ALK I L G A K ++ + E G DI+ TP + I
Sbjct: 240 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLK-EIERG-VDIVVATPGRLNDI 297
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + +S +DEA + + G + ++R ++ EVP + TAT
Sbjct: 298 LEMKRISLHQ--VSYLVLDEADRMLDMGFE--------PQIRKIVNEVPTKRQTLMYTAT 347
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR-------ANLFYGVKPFSRGQSFIDELVREISK 226
++VR I L +N V +G+ D + P + S +++++R
Sbjct: 348 WPKEVR-KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEK-HSRLEQILRS--- 402
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
+ G+ II+C+T + +Q++++LT A HG + R++ F ++V
Sbjct: 403 -QEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLV 460
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
AT G+D +IR V++Y P +E Y GR GR G + + ++
Sbjct: 461 ATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFF 509
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 153/354 (43%), Gaps = 38/354 (10%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVP--------PLVVKKTGIVVSP 64
GF++ P Q RD + + TGSGK+L Y +P P++ G +V
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLV 177
Query: 65 LISLMQDQVMALKERGIKAEYLGSAQKDFTV----------QTKAEHGQFDILFMTPEKA 114
L + V +E A GS+ K T Q + +I+ TP +
Sbjct: 178 LAPTRELAVQIQQE----ASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRL 233
Query: 115 CTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATA 174
+ S +NL + ++ +DEA + + G D ++ K + +R L +A
Sbjct: 234 IDMMESNNTNLRR--VTYLVLDEADRMLDMGFDPQIR-KIVSHIRPDRQT-----LYWSA 285
Query: 175 TEKVRFDIIKSLKMNNPY-VLVGSFD-RAN--LFYGVKPFSRGQSFIDELVREISKEVDS 230
T + + + NPY V++GS D +AN + V S Q + ++LV+ + +D
Sbjct: 286 TWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVKLLEDIMD- 343
Query: 231 GTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIA 290
G+ +++ T K +QI++ L G A HG + R+ F + IM AT
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 291 FGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD--FAK 342
G+D +++ VI+Y P S+E Y GR GR G + ++T + FAK
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 51/355 (14%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL-----------VVKKTG-- 59
G + P Q+ RD + TG+GK+L + +P + +++G
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 60 ---IVVSPLISLMQDQVMALKERGIKAEYLGS----AQKDFTVQTKAEHGQFDILFMTPE 112
+V++P L + +KE A YL + +T+Q A D++ TP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPG 237
Query: 113 KACTISTSFWSNLLKAG-ISLFAVDEAHCISEWGHDFRVE--YKNLDKLRSVLVEVPFVG 169
+ + LK G + +DEA + G + VE +NL R ++ F
Sbjct: 238 RIIDL---IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSML---FSA 291
Query: 170 LTATATEKVRFDIIKSLKMNNPYV--LVGSFDRANLFYGVKPF------SRGQSFIDELV 221
T +K + ++NP LVG D L G+K + + ++ + +L+
Sbjct: 292 TMPTWVKK-----LARKYLDNPLNIDLVGDQDE-KLAEGIKLYAIATTSTSKRTILSDLI 345
Query: 222 REISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDE 281
+K G TI++ T +D +++S +L+ + I HG ++ RE + F + +
Sbjct: 346 TVYAK----GGKTIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGK 400
Query: 282 VQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
++VAT G+D PN+ VIHY P E++ SGR GR G L +T
Sbjct: 401 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 51/355 (14%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL-----------VVKKTG-- 59
G + P Q+ RD + TG+GK+L + +P + +++G
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 60 ---IVVSPLISLMQDQVMALKERGIKAEYLGS----AQKDFTVQTKAEHGQFDILFMTPE 112
+V++P L + +KE A YL + +T+Q A D++ TP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPG 237
Query: 113 KACTISTSFWSNLLKAG-ISLFAVDEAHCISEWGHDFRVE--YKNLDKLRSVLVEVPFVG 169
+ + LK G + +DEA + G + VE +NL R ++ F
Sbjct: 238 RIIDL---IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSML---FSA 291
Query: 170 LTATATEKVRFDIIKSLKMNNPYV--LVGSFDRANLFYGVKPF------SRGQSFIDELV 221
T +K + ++NP LVG D L G+K + + ++ + +L+
Sbjct: 292 TMPTWVKK-----LARKYLDNPLNIDLVGDQDE-KLAEGIKLYAIATTSTSKRTILSDLI 345
Query: 222 REISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDE 281
+K G TI++ T +D +++S +L+ + I HG ++ RE + F + +
Sbjct: 346 TVYAK----GGKTIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGK 400
Query: 282 VQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
++VAT G+D PN+ VIHY P E++ SGR GR G L +T
Sbjct: 401 FTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 455
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 45/349 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 63 SP---LISLMQDQVMAL-KERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L + +Q++ + + I L G A K ++ E G DI+ TP + I
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLR-DLERGA-DIVVATPGRLNDI 294
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + IS +DEA + + G + ++R ++ E+P + TAT
Sbjct: 295 LEMRRISLRQ--ISYLVLDEADRMLDMGFE--------PQIRKIVKEIPTKRQTLMYTAT 344
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR--ANLFYG-----VKPFSRGQSFIDELVREISK 226
+ VR I L +N V +G+ D AN V P + Q +++++R S+
Sbjct: 345 WPKGVR-KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK-QRRLEQILR--SQ 400
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
E G+ II+C+T + +Q++++LT A HG + R+ F ++V
Sbjct: 401 E--PGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
AT G+D +IR V++Y P +E Y GR GR G + ++
Sbjct: 458 ATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 45/349 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 63 SP---LISLMQDQVMAL-KERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L + +Q++ + + I L G A K ++ E G DI+ TP + I
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLR-DLERGA-DIVVATPGRLNDI 294
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + IS +DEA + + G + ++R ++ E+P + TAT
Sbjct: 295 LEMRRISLRQ--ISYLVLDEADRMLDMGFE--------PQIRKIVKEIPTKRQTLMYTAT 344
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR--ANLFYG-----VKPFSRGQSFIDELVREISK 226
+ VR I L +N V +G+ D AN V P + Q +++++R S+
Sbjct: 345 WPKGVR-KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK-QRRLEQILR--SQ 400
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
E G+ II+C+T + +Q++++LT A HG + R+ F ++V
Sbjct: 401 E--PGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
AT G+D +IR V++Y P +E Y GR GR G + ++
Sbjct: 458 ATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 45/349 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 63 SP---LISLMQDQVMAL-KERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L + +Q++ + + I L G A K ++ E G DI+ TP + I
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLR-DLERGA-DIVVATPGRLNDI 294
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + IS +DEA + + G + ++R ++ E+P + TAT
Sbjct: 295 LEMRRISLRQ--ISYLVLDEADRMLDMGFE--------PQIRKIVKEIPTKRQTLMYTAT 344
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR--ANLFYG-----VKPFSRGQSFIDELVREISK 226
+ VR I L +N V +G+ D AN V P + Q +++++R S+
Sbjct: 345 WPKGVR-KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK-QRRLEQILR--SQ 400
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
E G+ II+C+T + +Q++++LT A HG + R+ F ++V
Sbjct: 401 E--PGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
AT G+D +IR V++Y P +E Y GR GR G + ++
Sbjct: 458 ATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 45/349 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----------VKKTGIVV 62
GFS P Q RD V + TGSGK+L Y +P + + T +V+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 63 SP---LISLMQDQVMAL-KERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
SP L + +Q++ + + I L G A K ++ E G DI+ TP + I
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLR-DLERGA-DIVVATPGRLNDI 294
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPF----VGLTAT 173
+L + IS +DEA + + G + ++R ++ E+P + TAT
Sbjct: 295 LEMRRISLRQ--ISYLVLDEADRMLDMGFE--------PQIRKIVKEIPTKRQTLMYTAT 344
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR--ANLFYG-----VKPFSRGQSFIDELVREISK 226
+ VR I L +N V +G+ D AN V P + Q +++++R S+
Sbjct: 345 WPKGVR-KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK-QRRLEQILR--SQ 400
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
E G+ II+C+T + +Q++++LT A HG + R+ F ++V
Sbjct: 401 E--PGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLV 457
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYY 335
AT G+D +IR V++Y P +E Y GR GR G + ++
Sbjct: 458 ATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 43/353 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKK----------TGIVV 62
GF P Q RD V + TGSGK+L Y +P ++ + T +++
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLIL 513
Query: 63 SP---LISLMQDQVMAL-KERGIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKACTI 117
+P L + +QD+ + + I L G A K ++ + E G DI+ TP + I
Sbjct: 514 APTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLK-ELERGA-DIVVATPGRLNDI 571
Query: 118 STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVP----FVGLTAT 173
+ + +SL +DEA + + G + ++R ++ E+P + TAT
Sbjct: 572 LEMKMIDFQQ--VSLLVLDEADRMLDMGFE--------PQIRKIVNEIPPRRQTLMYTAT 621
Query: 174 ATEKVRFDIIKSLKMNNPYVLVGSFDR--AN----LFYGVKPFSRGQSFIDELVREISKE 227
++VR I L +N V +G D AN + V P + +++++R +
Sbjct: 622 WPKEVR-KIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQER- 679
Query: 228 VDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 287
G+ II+C+T + + +++S+ A + HG R+ F + +++A
Sbjct: 680 ---GSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIA 735
Query: 288 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF 340
T G+D +IR VI+Y P +E Y GR GR G V + ++T D+
Sbjct: 736 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDW 788
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 51/336 (15%)
Query: 32 RDCVVVMATGSGKSLCYQVPPL-----------VVKKTG-----IVVSPLISLMQDQVMA 75
RD + TG+GK+L + +P + +++G +V++P L +
Sbjct: 47 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 106
Query: 76 LKERGIKAEYLGS----AQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAG-I 130
+KE A YL + +T+Q A D++ TP + + LK G +
Sbjct: 107 IKE---SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDL---IEGRSLKLGEV 160
Query: 131 SLFAVDEAHCISEWGHDFRVE--YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKM 188
+DEA + G + VE +NL R ++ F T +K + +
Sbjct: 161 EYLVLDEADQMLAVGFEEAVESILENLPTKRQSML---FSATMPTWVKK-----LARKYL 212
Query: 189 NNPYV--LVGSFDRANLFYGVKPF------SRGQSFIDELVREISKEVDSGTSTIIYCTT 240
+NP LVG D L G+K + + ++ + +L+ +K G TI++ T
Sbjct: 213 DNPLNIDLVGDQDE-KLAEGIKLYAIATTSTSKRTILSDLITVYAK----GGKTIVFTQT 267
Query: 241 IKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNI 300
+D +++S +L+ + I HG ++ RE + F + + ++VAT G+D PN+
Sbjct: 268 KRDADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNV 326
Query: 301 RKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
VIHY P E++ SGR GR G L +T
Sbjct: 327 DLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT 362
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 45/353 (12%)
Query: 14 FSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV---------------VKKT 58
F P Q RD + + TGSGK+L + +P ++ V T
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 59 GIVVSPLISLMQDQVMALKERG----IKA--EYLGSAQKDFTVQTKAEHGQFDILFMTPE 112
+V+SP L L+E G +K+ Y GS++ Q A DI+ TP
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGP---QISAIRSGVDIVIGTPG 250
Query: 113 KACTISTSFWSNLLK-AGISLFAVDEAHCISEWGHDFRVEY--KNLDKLRSVLVEVPFVG 169
+ + SN+L+ + +S +DEA + + G + V + N +K+R +++
Sbjct: 251 R---LRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVM------ 301
Query: 170 LTATATEKVRFDIIKSLKMNNPYVLVGSFDRA------NLFYGVKPFSRGQSFIDELVRE 223
+AT V + + N V++GS D A + + +R Q I L+ +
Sbjct: 302 FSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLI-ALLEK 360
Query: 224 ISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQ 283
K +++ + E++ + L + G KA HG R S LF
Sbjct: 361 YHK--SQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCP 418
Query: 284 IMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
++VAT G+D P++ VI+Y P + E Y GR GR G V ++T
Sbjct: 419 LLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 147/351 (41%), Gaps = 45/351 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL--VVK---KTGIVVSPL-I 66
G P QK RD + TG+GK+L + +P + ++K K G +PL +
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 67 SLMQDQVMALKERGIKAEYLGSAQKDFTV----------QTKAEHGQFDILFMTPEKACT 116
L + +A R ++ E+ SA T+ Q + D+ TP +
Sbjct: 183 VLAPTRELA---RQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Query: 117 ISTSFWSNLLKAGISLFAVDEAHCISEWG--HDFRVEYKNLDKLRSVLVEVPFVGLTATA 174
+ NL + + +DEA + + G D + + L + R ++ +AT
Sbjct: 240 LMKRGALNLSE--VQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMM------FSATM 291
Query: 175 TEKVRFDIIKSLKMNNPYV--LVGSFDRANLFYGVKPFS------RGQSFIDELVREISK 226
+R K L NNP LVG D+ L G+ +S S I LV E +K
Sbjct: 292 PSWIRSLTKKYL--NNPLTVDLVGDSDQ-KLADGITTYSIIADSYGRASIIGPLVTEHAK 348
Query: 227 EVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMV 286
G I++ T +D +++S +L + K HG ++ RE + F I+V
Sbjct: 349 ----GGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILV 403
Query: 287 ATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTR 337
AT G+D PN+ +IHY P + E++ +GR GR G L Y++
Sbjct: 404 ATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQ 454
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 210 FSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKS 269
F R Q +DEL + I++ T K+ + I+K+L +AG + HG + +
Sbjct: 564 FFRLQKLLDEL---------GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQ 614
Query: 270 REESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPS 329
RE S F ++VAT G GID P++ VI+Y PK IE Y GR GR G
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
Query: 330 VCWLYYTRGD 339
V + T D
Sbjct: 675 VATSFLTLHD 684
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 142/339 (41%), Gaps = 43/339 (12%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL--VVK---KTGIVVSP-LI 66
G P QK RD + TG+GK+L + +P + ++K K G +P +
Sbjct: 135 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCL 194
Query: 67 SLMQDQVMALKERGIKAEYLGSAQKDFTV----------QTKAEHGQFDILFMTPEKACT 116
L + +A R ++ E+ SA T+ Q + + D+ TP +
Sbjct: 195 VLAPTRELA---RQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Query: 117 ISTSFWSNLLKAGISLFAVDEAHCISEWG--HDFRVEYKNLDKLRSVLVEVPFVGLTATA 174
+ NL + + +DEA + + G D + + L R ++ +AT
Sbjct: 252 LMKRGALNLSE--VQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMM------FSATM 303
Query: 175 TEKVRFDIIKSLKMNNPYV--LVGSFDR----ANLFYGVKPFSRGQ-SFIDELVREISKE 227
+R K L NNP LVG D+ Y + S G+ S I LV+E K
Sbjct: 304 PSWIRSLTKKYL--NNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGK- 360
Query: 228 VDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 287
G I++ T +D ++++ L ++ K HG ++ RE + F I+VA
Sbjct: 361 ---GGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVA 416
Query: 288 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
T G+D PN+ VIHY P + E++ +GR GR G
Sbjct: 417 TDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG 455
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%)
Query: 232 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 291
+ II+ T + ++ AG+KA HG + R +S LF + EV ++AT
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 292 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCGDIK 351
G+D ++ VI+Y CP+ I+SY GR R G + T D + + +
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVG 532
Query: 352 SEIQRRAIME 361
S+++ R I E
Sbjct: 533 SKLKSRVIPE 542
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 36/347 (10%)
Query: 12 FGFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLV----VKKTGIVVSPLIS 67
GF++ P Q RD + + TGSGK+L Y +P LV + G P++
Sbjct: 183 LGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVL 242
Query: 68 LM---QDQVMALKER--------GIKAEYL-GSAQKDFTVQTKAEHGQFDILFMTPEKAC 115
++ ++ + ++E G+++ + G A K Q + +I+ TP +
Sbjct: 243 ILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG--PQIRDLRRGVEIVIATPGRLI 300
Query: 116 TISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATAT 175
+ +NL + ++ +DEA + + G + ++ K + ++R L +AT
Sbjct: 301 DMLECQHTNLKR--VTYLVLDEADRMLDMGFEPQIR-KIVSQIRPDRQT-----LLWSAT 352
Query: 176 EKVRFDIIKSLKMNNPY-VLVGSFD-----RANLFYGVKPFSRGQSFIDELVREISKEVD 229
+ + + +PY ++GS D N + P + + L+ K++
Sbjct: 353 WPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL----KQLM 408
Query: 230 SGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATI 289
G+ +I+ T + +Q+++ L G A HG R+ F IM AT
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATD 468
Query: 290 AFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
G+D +I+ V++Y P ++E Y GR GR G + + ++T
Sbjct: 469 VAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFT 515
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 141/345 (40%), Gaps = 39/345 (11%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPL------- 65
G P Q RD + + TGSGK+L + +P +++ ++ P+
Sbjct: 116 GIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPI 175
Query: 66 -ISLMQDQVMALKERGIKAEYLGSAQKDFTVQTKA--------EHGQFDILFMTPEKACT 116
+ + + +A + + +++ S +D + ++ Q D++
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVA 235
Query: 117 ISTSFWSNLLKAGISL-----FAVDEAHCISEWG--HDFRVEYKNLDKLRSVLVEVPFVG 169
L K +SL +DEA + + G D R + + R L+
Sbjct: 236 TPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLL------ 289
Query: 170 LTATATEKVRFDIIKSLKMNNPYVL-VGSFDRANL-FYGVKPFSRGQSFIDELVREISKE 227
+AT + I + + P + VG ANL + + ++ I L+ + K
Sbjct: 290 --FSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK- 346
Query: 228 VDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 287
+ +I+C DV+ I + L G++A HG + + R+ + LF + ++VA
Sbjct: 347 --TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVA 404
Query: 288 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQ---ESGRCGRDGIPS 329
T G+D P+I+ VI+Y P IE+Y +GRCG+ GI +
Sbjct: 405 TDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIAT 449
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 140/338 (41%), Gaps = 48/338 (14%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL--------VVKKTGIVVSP 64
GF P Q++ RD + G+GK+ + +P L V++ IV +
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTR 209
Query: 65 LISLMQDQVMALKERGIKAEYL----GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTS 120
++L QV + +K + + G++ KD ++ + +L TP +
Sbjct: 210 ELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL---YQPVHLLVGTPGRIL----- 261
Query: 121 FWSNLLKAGI------SLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATA 174
+L K G+ S+ +DEA + VE+ L S L E + L +A
Sbjct: 262 ---DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEH-----LISFLPESRQI-LMFSA 312
Query: 175 TEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTS- 233
T V K + NPYV + D L K ++ +F++E R+ +++ S
Sbjct: 313 TFPVTVKDFKDRFLTNPYV-INLMDELTL----KGITQFYAFVEE--RQKIHCLNTLFSK 365
Query: 234 -----TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVAT 288
+II+C ++ VE ++K +TE G H +M R F + +V T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
F GID + VI++ PK+ E+Y GR GR G
Sbjct: 426 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 140/338 (41%), Gaps = 48/338 (14%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL--------VVKKTGIVVSP 64
GF P Q++ RD + G+GK+ + +P L V++ IV +
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTR 209
Query: 65 LISLMQDQVMALKERGIKAEYL----GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTS 120
++L QV + +K + + G++ KD ++ + +L TP +
Sbjct: 210 ELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL---YQPVHLLVGTPGRIL----- 261
Query: 121 FWSNLLKAGI------SLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATA 174
+L K G+ S+ +DEA + VE+ L S L E + L +A
Sbjct: 262 ---DLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEH-----LISFLPESRQI-LMFSA 312
Query: 175 TEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTS- 233
T V K + NPYV + D L K ++ +F++E R+ +++ S
Sbjct: 313 TFPVTVKDFKDRFLTNPYV-INLMDELTL----KGITQFYAFVEE--RQKIHCLNTLFSK 365
Query: 234 -----TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVAT 288
+II+C ++ VE ++K +TE G H +M R F + +V T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
F GID + VI++ PK+ E+Y GR GR G
Sbjct: 426 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 139/355 (39%), Gaps = 59/355 (16%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVK--------------KT 58
G P Q RD + + TGSGK+L + +P +++
Sbjct: 165 GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI 224
Query: 59 GIVVSPLISLMQDQ-------VMALKERGIKA--EYLGSAQKDFTVQTKAEHGQFDILFM 109
G++V P L + V L E G L D Q + I+
Sbjct: 225 GLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVA 284
Query: 110 TPEKACTISTSFWSNLLKAGISL-----FAVDEAHCISEWG--HDFRVEYKNLDKLRSVL 162
TP + L K +SL +DEA + + G D R + + R L
Sbjct: 285 TPGR-------LKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTL 337
Query: 163 VEVPFVGLTATATEKV----RFDIIKSLKMNNPYVLVGSFDRANL-FYGVKPFSRGQSFI 217
+ +AT K+ R ++K + +N VG ANL + + ++ I
Sbjct: 338 L------FSATMPTKIQIFARSALVKPVTVN-----VGRAGAANLDVIQEVEYVKQEAKI 386
Query: 218 DELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLF 277
L+ + K + +I+C DV+ I + L G++A HG + + RE + F
Sbjct: 387 VYLLECLQK---TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 443
Query: 278 VRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQ---ESGRCGRDGIPS 329
+ ++VAT G+D P+I+ VI+Y P IE+Y +GRCG+ GI +
Sbjct: 444 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 498
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%)
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
TI++CT++ D+ IS L G+ +M ++R +S F E I++AT
Sbjct: 505 TIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVAR 564
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGR 324
GID N+R +IHY P S E Y GR R
Sbjct: 565 GIDIKNVRTIIHYKLPHSAEVYVHRCGRTAR 595
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 139/333 (41%), Gaps = 38/333 (11%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL--------VVKKTGIVVSP 64
GF P Q++ D + G+GK+ + +P L V++ +V +
Sbjct: 173 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTR 232
Query: 65 LISLMQDQVMALKERGIKAEYL----GSAQKDFTVQTKAEHGQFDILFMTPEKACTISTS 120
++L QV + +K E + G++ +D ++ + +L TP +
Sbjct: 233 ELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL---YQPVHLLVGTPGRIL----- 284
Query: 121 FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYK-NLDKLRSVLVEVPFVGLTATATEKVR 179
+L K G+ + + E VE++ ++++L L E + L +AT V
Sbjct: 285 ---DLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQI-LMFSATFPVT 340
Query: 180 FDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTS------ 233
K + PY+ + D+ L GV + +F++E R+ +++ S
Sbjct: 341 VKSFKDRYLKKPYI-INLMDQLTLM-GVTQYY---AFVEE--RQKVHCLNTLFSKLQINQ 393
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
+II+C ++ VE ++K +TE G H +M R F + +V T F
Sbjct: 394 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 453
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
GID + VI++ P++ ESY GR GR G
Sbjct: 454 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 486
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 132/326 (40%), Gaps = 41/326 (12%)
Query: 32 RDCVVVMATGSGKSLCYQVPPL-VVKKT-------------GIVVSPLISLMQDQVMALK 77
+D + TG+GK++ + +P + VV K+ +V+ P L A
Sbjct: 358 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELAN---QAAT 414
Query: 78 ERGIKAEYLGSAQKDFTV--------QTKAEHGQFDILFMTPE--KACTISTSFWSNLLK 127
E +Y S + Q + + IL TP K +T ++ LK
Sbjct: 415 EANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLK 474
Query: 128 AGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLK 187
G+ + +DEA + + G FR + + + + +V E +AT E+VR + +L+
Sbjct: 475 -GVKVLVLDEADHLLDMG--FRKDIERI--ISAVPKERQTFLFSATVPEEVRQICLVALR 529
Query: 188 MNNPYV------LVGSFDRANLFYGVKPFSRGQSFIDELVRE-ISKEVDSGTSTIIYCTT 240
++ +V + + + + + R S + L+RE I VD I++CTT
Sbjct: 530 RDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVD--YKVIVFCTT 587
Query: 241 IKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNI 300
+ ++ L E + H + R F + + I+V + G+D P++
Sbjct: 588 AMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDV 647
Query: 301 RKVIHYGCPKSIESYYQESGRCGRDG 326
V+ G PK E Y GR GR G
Sbjct: 648 TLVLQVGLPKDREQYIHRLGRTGRKG 673
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 133/330 (40%), Gaps = 32/330 (9%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL-VVKKTGIVVSPLISLMQD 71
GF P Q++ D + G+GK+ + +P L + V+ +I L+
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMI-LVPT 201
Query: 72 QVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFM-TPEKACTISTSFWSNLLKAGI 130
+ +AL+ + E V T + DI+ + P + +L K G+
Sbjct: 202 RELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGV 261
Query: 131 ------SLFAVDEAHCI--SEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDI 182
++ +DEA + +E+ + L + R L+ +AT V
Sbjct: 262 CVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM--------FSATFPVTVKA 313
Query: 183 IKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTS------TII 236
K + PYV + D+ L GV + +F++E R+ +++ S +II
Sbjct: 314 FKDRHLRKPYV-INLMDQLTLM-GVTQYY---AFVEE--RQKVHCLNTLFSKLQINQSII 366
Query: 237 YCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGID 296
+C ++ VE ++K +TE G H +M R F + +V T F GID
Sbjct: 367 FCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGID 426
Query: 297 KPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
+ VI++ P++ ESY GR GR G
Sbjct: 427 IQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 133/330 (40%), Gaps = 32/330 (9%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPL-VVKKTGIVVSPLISLMQD 71
GF P Q++ D + G+GK+ + +P L + V+ +I L+
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMI-LVPT 201
Query: 72 QVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFM-TPEKACTISTSFWSNLLKAGI 130
+ +AL+ + E V T + DI+ + P + +L K G+
Sbjct: 202 RELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGV 261
Query: 131 ------SLFAVDEAHCI--SEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDI 182
++ +DEA + +E+ + L + R L+ +AT V
Sbjct: 262 CVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM--------FSATFPVTVKA 313
Query: 183 IKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTS------TII 236
K + PYV + D+ L GV + +F++E R+ +++ S +II
Sbjct: 314 FKDRHLRKPYV-INLMDQLTLM-GVTQYY---AFVEE--RQKVHCLNTLFSKLQINQSII 366
Query: 237 YCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGID 296
+C ++ VE ++K +TE G H +M R F + +V T F GID
Sbjct: 367 FCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGID 426
Query: 297 KPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
+ VI++ P++ ESY GR GR G
Sbjct: 427 IQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
T+++ T K + + L G A HG + + RE + R F I+VAT
Sbjct: 408 TLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAAR 467
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYT 336
G+D P++ V+++ P I+ Y GR GR G + ++
Sbjct: 468 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN 510
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
T+++ T + + + L G A HG + RE + + F I+VAT
Sbjct: 421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR 480
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 339
G+D P++ V+++ P I+ Y GR GR G + ++ G+
Sbjct: 481 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGN 526
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 231 GTSTIIYCTTIKDVEQISKSLTEAG---IKAGMYHGQMNGKSREESHRLFVRDEVQIMVA 287
G II+ ++++ ++ K L G IKA Y G +N R + + F + ++Q++VA
Sbjct: 335 GEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVA 394
Query: 288 TIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCW 332
+ A G+D + VI+Y P +++ +GR R G C+
Sbjct: 395 SDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCF 439
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 141/364 (38%), Gaps = 79/364 (21%)
Query: 13 GFSDFRPYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVP------------------PLV 54
GF Q+ +D + TG+GK++ + +P P++
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPII 158
Query: 55 VKKTGIVVSPLISLM-----QDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFM 109
V +VV P L + ++ I + + K T Q + + IL
Sbjct: 159 V----LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVA 214
Query: 110 TPEKA---CTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVP 166
TP + ++ F + L+ G+ + +DEA + + G FR E + + + +V +
Sbjct: 215 TPGRLKDHIDNTSGFATRLM--GVKVLVLDEADHLLDMG--FRREIERI--IAAVPKQRQ 268
Query: 167 FVGLTATATEKVRFDIIKSLKMNNPYV------------------LVGSFDRA-NLFYGV 207
+AT +++VR +LK ++ +V ++ S DR +L YG+
Sbjct: 269 TFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGL 328
Query: 208 KPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNG 267
L + I+ V G II+CTT ++ L + + H +
Sbjct: 329 ------------LKKHITDNV--GYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSR--- 371
Query: 268 KSREESHRLFVRDEVQ-----IMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRC 322
+ +S+R V DE + I+V + G+D P++ V+ G P E Y GR
Sbjct: 372 --KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRT 429
Query: 323 GRDG 326
GR G
Sbjct: 430 GRKG 433
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 210 FSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAG-IKAGMYHGQMNGK 268
FSR + ID+L + I++ T V+ I K+L + G + H + +
Sbjct: 450 FSRLKKLIDDL--------GDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQE 501
Query: 269 SREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIP 328
R+ S F + ++V T G G+D ++ +VI+Y P +++ Y GR GR G
Sbjct: 502 QRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKT 561
Query: 329 SVCWLYYTRGDFAKGEFY 346
V + T D K FY
Sbjct: 562 GVATTFLTLED--KDVFY 577
>AT3G02060.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:354412-358319 FORWARD LENGTH=822
Length = 822
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 43/295 (14%)
Query: 57 KTGIVVSPLISLMQDQVMALKER-----GIKAEYLGSAQKDFTVQTKAEHGQFDILFMTP 111
K +V++P I L + + ER IK L QTKAE ++ + T
Sbjct: 319 KQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSR------FQTKAEKEEYLEMIKTG 372
Query: 112 EKACTISTS--FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVG 169
+ T S ++ + + L VDE R K +K+ S V +
Sbjct: 373 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQ---------RFGVKQKEKIASFKTSVDVLT 423
Query: 170 LTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKP-----FSRGQSFIDELVRE- 223
L+AT I ++L Y+ + F A+L P + SF E V E
Sbjct: 424 LSATP-------IPRTL-----YLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEA 471
Query: 224 ISKEVDSGTSTIIYCTTIKDVEQISKSLTEA--GIKAGMYHGQMNGKSREESHRLFVRDE 281
I E+D G IK +E++ L EA I M HG+ K EE+ F + +
Sbjct: 472 IKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGK 531
Query: 282 VQIMVATIAFGMGIDKPNIRKVIHYGCPK-SIESYYQESGRCGRDGIPSVCWLYY 335
++I++ T G+D N +I + + YQ GR GR + +L+Y
Sbjct: 532 IKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 586
>AT3G02060.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:354409-358319 FORWARD LENGTH=823
Length = 823
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 43/295 (14%)
Query: 57 KTGIVVSPLISLMQDQVMALKER-----GIKAEYLGSAQKDFTVQTKAEHGQFDILFMTP 111
K +V++P I L + + ER IK L QTKAE ++ + T
Sbjct: 320 KQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSR------FQTKAEKEEYLEMIKTG 373
Query: 112 EKACTISTS--FWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVG 169
+ T S ++ + + L VDE R K +K+ S V +
Sbjct: 374 HLNIIVGTHSLLGSRVVYSNLGLLVVDEEQ---------RFGVKQKEKIASFKTSVDVLT 424
Query: 170 LTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKP-----FSRGQSFIDELVRE- 223
L+AT I ++L Y+ + F A+L P + SF E V E
Sbjct: 425 LSATP-------IPRTL-----YLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEA 472
Query: 224 ISKEVDSGTSTIIYCTTIKDVEQISKSLTEA--GIKAGMYHGQMNGKSREESHRLFVRDE 281
I E+D G IK +E++ L EA I M HG+ K EE+ F + +
Sbjct: 473 IKNELDRGGQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGK 532
Query: 282 VQIMVATIAFGMGIDKPNIRKVIHYGCPK-SIESYYQESGRCGRDGIPSVCWLYY 335
++I++ T G+D N +I + + YQ GR GR + +L+Y
Sbjct: 533 IKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 587
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 137/361 (37%), Gaps = 60/361 (16%)
Query: 19 PYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLIS-LMQDQVMALK 77
P Q+ RD + TGSGK+ + P+IS +M+DQ + +
Sbjct: 176 PVQRHAIPILLAERDLMACAQTGSGKTAAF-------------CFPIISGIMKDQHVE-R 221
Query: 78 ERGIKAEY---------------LGSAQKDFTVQTKAE----------HGQF-------D 105
RG +A Y + K F+ QT + H Q D
Sbjct: 222 PRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Query: 106 ILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVE--YKNLD-KLRSVL 162
IL TP + + + + I A+DEA + + G + ++ + +D R V
Sbjct: 282 ILVATPGRLNDLLER--ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 163 VEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRA-NLFYGVKPF---SRGQSFID 218
+ F + +++ D + N ++ VG + +L F S +S +
Sbjct: 340 QTMLFSATFPSQIQRLAADFMS----NYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLM 395
Query: 219 ELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFV 278
+L+ + D + T+++ T + + + L A HG + RE + R F
Sbjct: 396 DLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFK 455
Query: 279 RDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRG 338
I+VAT G+D P++ V+++ P I+ Y GR GR G + ++
Sbjct: 456 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNEN 515
Query: 339 D 339
+
Sbjct: 516 N 516
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 137/361 (37%), Gaps = 60/361 (16%)
Query: 19 PYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLIS-LMQDQVMALK 77
P Q+ RD + TGSGK+ + P+IS +M+DQ + +
Sbjct: 176 PVQRHAIPILLAERDLMACAQTGSGKTAAF-------------CFPIISGIMKDQHVE-R 221
Query: 78 ERGIKAEY---------------LGSAQKDFTVQTKAE----------HGQF-------D 105
RG +A Y + K F+ QT + H Q D
Sbjct: 222 PRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Query: 106 ILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVE--YKNLD-KLRSVL 162
IL TP + + + + I A+DEA + + G + ++ + +D R V
Sbjct: 282 ILVATPGRLNDLLER--ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 163 VEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRA-NLFYGVKPF---SRGQSFID 218
+ F + +++ D + N ++ VG + +L F S +S +
Sbjct: 340 QTMLFSATFPSQIQRLAADFMS----NYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLM 395
Query: 219 ELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFV 278
+L+ + D + T+++ T + + + L A HG + RE + R F
Sbjct: 396 DLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFK 455
Query: 279 RDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRG 338
I+VAT G+D P++ V+++ P I+ Y GR GR G + ++
Sbjct: 456 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNEN 515
Query: 339 D 339
+
Sbjct: 516 N 516
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 137/361 (37%), Gaps = 60/361 (16%)
Query: 19 PYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLIS-LMQDQVMALK 77
P Q+ RD + TGSGK+ + P+IS +M+DQ + +
Sbjct: 176 PVQRHAIPILLAERDLMACAQTGSGKTAAF-------------CFPIISGIMKDQHVE-R 221
Query: 78 ERGIKAEY---------------LGSAQKDFTVQTKAE----------HGQF-------D 105
RG +A Y + K F+ QT + H Q D
Sbjct: 222 PRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Query: 106 ILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVE--YKNLD-KLRSVL 162
IL TP + + + + I A+DEA + + G + ++ + +D R V
Sbjct: 282 ILVATPGRLNDLLER--ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339
Query: 163 VEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRA-NLFYGVKPF---SRGQSFID 218
+ F + +++ D + N ++ VG + +L F S +S +
Sbjct: 340 QTMLFSATFPSQIQRLAADFMS----NYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLM 395
Query: 219 ELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFV 278
+L+ + D + T+++ T + + + L A HG + RE + R F
Sbjct: 396 DLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFK 455
Query: 279 RDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRG 338
I+VAT G+D P++ V+++ P I+ Y GR GR G + ++
Sbjct: 456 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNEN 515
Query: 339 D 339
+
Sbjct: 516 N 516
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 137/338 (40%), Gaps = 65/338 (19%)
Query: 32 RDCVVVMATGSGKSLCY------------------QVPPLVVKKTGIVVSPLISLM---- 69
+D + TG+GK++ + + PP++V +VV P L
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIV----LVVCPTRELASQAA 475
Query: 70 -QDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEK---ACTISTSFWSNL 125
+ + I + + K T Q + + IL TP + ++ F + L
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRL 535
Query: 126 LKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVP-----FVGLTATATEKVRF 180
+ G+ + +DEA + + G FR + + ++ VP F+ +AT E+VR
Sbjct: 536 M--GVKVLVLDEADHLLDMG--FRRD------IERIIAAVPKQRQTFL-FSATVPEEVRQ 584
Query: 181 DIIKSLKMNNPY---VLVGS---FDRANLFYGVKPFSRGQSFIDELVRE-ISKEVDSGTS 233
+LK ++ + V GS + Y + R S + L++E I+ VD
Sbjct: 585 ICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVD--YK 642
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQ-----IMVAT 288
II+CTT ++ L++ + H + + +S+R V DE + I+V +
Sbjct: 643 VIIFCTTAMVTRLVADLLSQLSLNVREIHSR-----KPQSYRTRVSDEFRKSKAIILVTS 697
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
G+D P++ V+ G P E Y GR GR G
Sbjct: 698 DVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKG 735
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 232 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 291
T +I+C T + V+ +S+ + HG M K R+ F + ++++ T +
Sbjct: 275 TQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVW 334
Query: 292 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF 340
GID + VI+Y P + E Y GR GR G V + D
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 383
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 153/379 (40%), Gaps = 56/379 (14%)
Query: 19 PYQKDXXXXXXXXRDCVVVMATGSGKSLCYQVPPLVVKK-----------TGIVVSPLIS 67
P Q RDC+ V TGSGK+L + +P L K G+V++P
Sbjct: 216 PIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 275
Query: 68 LMQ----DQVMALKERGIK--AEYLGS--AQKDFTVQTKAEHGQFDILFMTPEKACTI-- 117
L+Q D K GI+ Y GS AQ+ ++ E I+ TP + I
Sbjct: 276 LVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE-----IVVCTPGRMIDILC 330
Query: 118 -STSFWSNLLKAGISLFAVDEAHCISEWGHDFRVE--YKNLDKLR-SVLVEVPFVGLTAT 173
S+ +NL + ++ +DEA + + G + ++ +N+ R +VL F T
Sbjct: 331 TSSGKITNLRR--VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVET 388
Query: 174 ATEKVRFDIIKSLKMNNPY-VLVGSFDRAN----LFYGVKPFSRGQSFIDELVREISKEV 228
KV +N P + VG N V+P S + EL+ E S++
Sbjct: 389 LARKV---------LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEK- 438
Query: 229 DSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVAT 288
+++ + + + + + + ++ HG + RE + F D +++AT
Sbjct: 439 ---GKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 495
Query: 289 IAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCG 348
G+D + V+++ P E Y GR GR G C + + D AK Y
Sbjct: 496 SVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG-CAVTFISEDDAK---YAP 551
Query: 349 DIKS--EIQRRAIMESLRA 365
D+ E+ + + + L+A
Sbjct: 552 DLVKALELSEQPVPDDLKA 570
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT G
Sbjct: 350 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 409
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
GID + VI+Y P S ++Y GR GR G
Sbjct: 410 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 442
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 232 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 291
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 330 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 389
Query: 292 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
G GID + VI+Y P S ++Y GR GR G
Sbjct: 390 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 424
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 234 TIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT G
Sbjct: 208 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 267
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
GID + VI+Y P S ++Y GR GR G
Sbjct: 268 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 135/330 (40%), Gaps = 48/330 (14%)
Query: 32 RDCVVVMATGSGKSLCYQVPPL--VVK-----KTGIVVSPLISL-------MQDQVMA-- 75
+D +V TG+GKS+ + +P + V+K K V+P+ +L + Q+ A
Sbjct: 366 KDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEG 425
Query: 76 ---LK-ERGIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTI---STSFWSNLLKA 128
LK GI + L + Q + E IL TP + + S L+
Sbjct: 426 KALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLM-- 483
Query: 129 GISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKM 188
+ LF VDEA + + G VE K +D L + F +AT ++VR LK
Sbjct: 484 ALKLFIVDEADLLLDLGFRRDVE-KIIDCLPRQRQSLLF---SATIPKEVRRVSQLVLKR 539
Query: 189 NNPYV------LVGSFDRANLFYGVKPFSRGQSFIDELVRE-ISKEVDSGTSTIIYCTTI 241
++ Y+ V + D+ V P + L++E I+ D I++C+T
Sbjct: 540 DHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPD--YKIIVFCSTG 597
Query: 242 KDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQ-----IMVATIAFGMGID 296
+ L E + H + + + HR V DE + I+V + G++
Sbjct: 598 MVTSLMYTLLREMKLNVREIHAR-----KPQLHRTRVSDEFKESNRLILVTSDVSARGMN 652
Query: 297 KPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
P++ VI G P E Y GR GR+G
Sbjct: 653 YPDVTLVIQVGIPSDREQYIHRLGRTGREG 682
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 36/312 (11%)
Query: 41 GSGKSLCY------QVPPLVVKKTGIVVSPLISLMQDQVMALKE----RGIKAEY-LGSA 89
GSGK+ C+ +V P + + + + P L + L++ GI AE + +
Sbjct: 141 GSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDS 200
Query: 90 QKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGIS---LFAVDEA-HCISEWG 145
+ T+ ++ TP + W + G++ + DEA H ++ G
Sbjct: 201 TRGAPAATRGAPVSAHVVIGTPG-----TLKKWMAFKRLGLNHLKILVFDEADHMLATDG 255
Query: 146 HDFRVE-YKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVG---SFDRA 201
FR + K + + V + +AT E V+ + +++K N + + D
Sbjct: 256 --FRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSV 313
Query: 202 NLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMY 261
+ V P + Q+ I+ + +I + D G TII+ T +++ K+L E G
Sbjct: 314 KQYKVVCP--KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSV 370
Query: 262 HGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIES------- 314
HG + R++ + F Q+++AT G D+ + V++Y P E+
Sbjct: 371 HGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEV 430
Query: 315 YYQESGRCGRDG 326
Y GR GR G
Sbjct: 431 YLHRVGRAGRFG 442
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 232 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 291
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 348
Query: 292 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
G GID + VI+Y P S ++Y GR GR G
Sbjct: 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 232 TSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAF 291
+I+ ++ +++K L E + H M+ + R ++ F +I+VAT
Sbjct: 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 348
Query: 292 GMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
G GID + VI+Y P S ++Y GR GR G
Sbjct: 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 134/330 (40%), Gaps = 48/330 (14%)
Query: 32 RDCVVVMATGSGKSLCYQVPPL--VVK-----KTGIVVSPLISL-------MQDQVMA-- 75
+D +V TG+GKS+ + +P + V+K K V+P+ L + Q+ A
Sbjct: 413 KDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEG 472
Query: 76 ---LKER-GIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTI---STSFWSNLLKA 128
LK GI + L + Q + E IL TP + + S L+
Sbjct: 473 KALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLM-- 530
Query: 129 GISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKM 188
+ LF VDEA + + G VE K +D L + F +AT ++VR LK
Sbjct: 531 ALKLFIVDEADLLLDLGFKRDVE-KIIDCLPRQRQSLLF---SATIPKEVRRVSQLVLKR 586
Query: 189 NNPYV------LVGSFDRANLFYGVKPFSRGQSFIDELVRE-ISKEVDSGTSTIIYCTTI 241
++ Y+ V + D+ V P + L++E I+ D I++C+T
Sbjct: 587 DHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPD--YKIIVFCSTG 644
Query: 242 KDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQ-----IMVATIAFGMGID 296
+ L E + H + + + HR V DE + I+V + G++
Sbjct: 645 MVTSLMYTLLREMKLNVREIHAR-----KPQLHRTCVSDEFKESNRLILVTSDVSARGMN 699
Query: 297 KPNIRKVIHYGCPKSIESYYQESGRCGRDG 326
P++ VI G P E Y GR GR+G
Sbjct: 700 YPDVTLVIQVGIPSDREQYIHRLGRTGREG 729
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 149/368 (40%), Gaps = 60/368 (16%)
Query: 32 RDCVVVMATGSGKSLCYQVPPLVVKKT-----------GIVVSPLISLMQ----DQVMAL 76
RDC+ V TGSGK+L + +P L K G+V++P L+Q D
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 77 KERGIK--AEYLGS--AQKDFTVQTKAEHGQFDILFMTPEKACTI---STSFWSNLLKAG 129
K GI+ Y GS AQ+ ++ E I+ TP + I S+ +NL +
Sbjct: 627 KPLGIRCVPVYGGSGVAQQISELKRGTE-----IVVCTPGRMIDILCTSSGKITNLRR-- 679
Query: 130 ISLFAVDEAHCISEWGHDFRVEY--KNLDKLR-SVLVEVPFVGLTATATEKVRFDIIKSL 186
++ +DEA + + G + ++ +N+ R +VL F T KV
Sbjct: 680 VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKV-------- 731
Query: 187 KMNNPY-VLVGSFDRAN----LFYGVKPFSRGQSFIDELVR--EISKEVDSGTSTIIYCT 239
+N P + VG N V+P S D +R E+ E +++
Sbjct: 732 -LNKPVEIQVGGRSVVNKDITQLVEVRPES------DRFLRLLELLGEWSEKGKILVFVQ 784
Query: 240 TIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPN 299
+ + + + + + ++ HG + RE + F D +++AT G+D
Sbjct: 785 SQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKE 844
Query: 300 IRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCGDIKS--EIQRR 357
+ V+++ P E Y GR GR G C + + D AK Y D+ E+ +
Sbjct: 845 LELVVNFDAPNHYEDYVHRVGRTGRAGRKG-CAVTFISEDDAK---YAPDLVKALELSEQ 900
Query: 358 AIMESLRA 365
+ + L+A
Sbjct: 901 PVPDDLKA 908
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 235 IIYCTTIKDVEQISKSLTEA-GIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGM 293
++Y ++ + ++ ++T G+KA HG+ K R + F+ EV ++V+T G
Sbjct: 224 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 283
Query: 294 GIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 339
G+D +R+VI + P +I+ Y GR R G ++ D
Sbjct: 284 GVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 329
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 130 ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 189
I F +DE C+ + G FR + + + S + F + EKV + K + +
Sbjct: 261 IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL- 317
Query: 190 NPYVLVGSFDRAN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDV 244
V +G+ ++ N L V + Q D L + ++Y ++
Sbjct: 318 ---VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDIL----RSQNHFKPPAVVYVSSRVGA 370
Query: 245 EQISKSLTEA-GIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKV 303
+ ++ ++T G+KA HG+ K R + F+ EV ++V+T G G+D +R+V
Sbjct: 371 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 430
Query: 304 IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 339
I + P +I+ Y GR R G ++ D
Sbjct: 431 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 130 ISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMN 189
I F +DE C+ + G FR + + + S + F + EKV + K + +
Sbjct: 261 IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAKEIIL- 317
Query: 190 NPYVLVGSFDRAN-----LFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDV 244
V +G+ ++ N L V + Q D L + ++Y ++
Sbjct: 318 ---VSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDIL----RSQNHFKPPAVVYVSSRVGA 370
Query: 245 EQISKSLTEA-GIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKV 303
+ ++ ++T G+KA HG+ K R + F+ EV ++V+T G G+D +R+V
Sbjct: 371 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 430
Query: 304 IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGD 339
I + P +I+ Y GR R G ++ D
Sbjct: 431 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 235 IIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMG 294
II+C T + V+ +++ + + HG K R++ F + ++++A+ + G
Sbjct: 265 IIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARG 324
Query: 295 IDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDF 340
ID + VI+Y P + E Y GR GR G V + D
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDM 370