Miyakogusa Predicted Gene

Lj2g3v1613110.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1613110.2 Non Chatacterized Hit- tr|G7K184|G7K184_MEDTR
Nucleoside-triphosphatase, putative OS=Medicago trunca,88.48,0,ATPases
associated with a variety of cellula,AAA+ ATPase domain; SUBFAMILY NOT
NAMED,NULL; KINASE-RE,CUFF.37563.2
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66005.3 | Symbols:  | Expressed protein | chr5:26397864-2639...   277   3e-75
AT5G66005.2 | Symbols:  | Expressed protein | chr5:26398286-2639...   241   2e-64
AT5G66005.1 | Symbols:  | Expressed protein | chr5:26397864-2639...   202   1e-52

>AT5G66005.3 | Symbols:  | Expressed protein |
           chr5:26397864-26399123 REVERSE LENGTH=192
          Length = 192

 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/191 (68%), Positives = 158/191 (82%)

Query: 1   MAGPGKCFLVTGPPGVGKSTLIMRVFETLKSSNPNLKVQGFYTREVRSAGERVGFEVVTL 60
           MAG GKC LVTGPPGVGK+TLIMRV + ++ SNPNLK+QGFYT+E+R  G+RVGF+VVTL
Sbjct: 1   MAGTGKCLLVTGPPGVGKTTLIMRVLDMMRVSNPNLKIQGFYTQEMRERGQRVGFQVVTL 60

Query: 61  DGRTCPLASTIISSPESMRWPSVGKYKVDVASFESLALPELQVREDTDLFIIDEVGKMEL 120
           DGRT  LAS+I+SS ESM WPSVGKYKVD+ASFES+ALPELQV++DT+LFIIDEVGKME+
Sbjct: 61  DGRTSLLASSIVSSQESMTWPSVGKYKVDIASFESIALPELQVKDDTNLFIIDEVGKMEM 120

Query: 121 YSSSFFPAVLRVLESNIPILASIPVLKFGRDIPAVARLRNHAGATCFTLSVSNRDAVREQ 180
           +S SFFPAVL VL+SN+P+LASIP  KFGR +P VARL+N  G    +LS +NRD ++E 
Sbjct: 121 FSPSFFPAVLNVLDSNVPLLASIPSPKFGRHLPEVARLKNQPGVNVISLSATNRDPMKEH 180

Query: 181 ICSLLEDLLLK 191
           I  +    L K
Sbjct: 181 IFDVFSGWLPK 191


>AT5G66005.2 | Symbols:  | Expressed protein |
           chr5:26398286-26399123 REVERSE LENGTH=164
          Length = 164

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 136/153 (88%), Gaps = 1/153 (0%)

Query: 1   MAGPGKCFLVTGPPGVGKSTLIMRVFETLKSSNPNLKVQGFYTREVRSAGERVGFEVVTL 60
           MAG GKC LVTGPPGVGK+TLIMRV + ++ SNPNLK+QGFYT ++R  G+RVGF+VVTL
Sbjct: 1   MAGTGKCLLVTGPPGVGKTTLIMRVLDMMRVSNPNLKIQGFYT-QMRERGQRVGFQVVTL 59

Query: 61  DGRTCPLASTIISSPESMRWPSVGKYKVDVASFESLALPELQVREDTDLFIIDEVGKMEL 120
           DGRT  LAS+I+SS ESM WPSVGKYKVD+ASFES+ALPELQV++DT+LFIIDEVGKME+
Sbjct: 60  DGRTSLLASSIVSSQESMTWPSVGKYKVDIASFESIALPELQVKDDTNLFIIDEVGKMEM 119

Query: 121 YSSSFFPAVLRVLESNIPILASIPVLKFGRDIP 153
           +S SFFPAVL VL+SN+P+LASIP  KFGR +P
Sbjct: 120 FSPSFFPAVLNVLDSNVPLLASIPSPKFGRHLP 152


>AT5G66005.1 | Symbols:  | Expressed protein |
           chr5:26397864-26398812 REVERSE LENGTH=147
          Length = 147

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 118/146 (80%)

Query: 46  VRSAGERVGFEVVTLDGRTCPLASTIISSPESMRWPSVGKYKVDVASFESLALPELQVRE 105
           +R  G+RVGF+VVTLDGRT  LAS+I+SS ESM WPSVGKYKVD+ASFES+ALPELQV++
Sbjct: 1   MRERGQRVGFQVVTLDGRTSLLASSIVSSQESMTWPSVGKYKVDIASFESIALPELQVKD 60

Query: 106 DTDLFIIDEVGKMELYSSSFFPAVLRVLESNIPILASIPVLKFGRDIPAVARLRNHAGAT 165
           DT+LFIIDEVGKME++S SFFPAVL VL+SN+P+LASIP  KFGR +P VARL+N  G  
Sbjct: 61  DTNLFIIDEVGKMEMFSPSFFPAVLNVLDSNVPLLASIPSPKFGRHLPEVARLKNQPGVN 120

Query: 166 CFTLSVSNRDAVREQICSLLEDLLLK 191
             +LS +NRD ++E I  +    L K
Sbjct: 121 VISLSATNRDPMKEHIFDVFSGWLPK 146