Miyakogusa Predicted Gene

Lj2g3v1601010.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1601010.2 Non Chatacterized Hit- tr|Q8C0U7|Q8C0U7_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=Ml,30.92,3e-18,MutL_C,MutL, C-terminal, dimerisation; DNA MISMATCH
REPAIR PROTEIN MLH3,NULL; DNA MISMATCH REPAIR PR,CUFF.37557.2
         (681 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | c...   409   e-114
AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putat...    63   6e-10

>AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 |
            chr4:16865488-16871527 FORWARD LENGTH=1169
          Length = 1169

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/460 (51%), Positives = 299/460 (65%), Gaps = 42/460 (9%)

Query: 242  HESSVRNCNRSSTDKGKREHFRHTSLGKNHERSKRSSSAPPFHRSKRRFICLHQAPETIA 301
            H   VR  ++ S  K K  +   T      +RSKRS SAPPF+R K+RFI L    +T  
Sbjct: 724  HADDVR-IDQYSIRKEKFSYMDGTQNNAGKQRSKRSRSAPPFYREKKRFISLSCKSDTKP 782

Query: 302  KRSPGRASSPIFNHHEASDPQQSPGALH---TSTDDLLLQEFKTNVKQSSEVLGDSKVND 358
            K S    S P  +  E      +   +H   +  DD+     +   K+ S        +D
Sbjct: 783  KNSD--PSEP--DDLECLTQPCNASQMHLKCSILDDVSYDHIQETEKRLSSA------SD 832

Query: 359  IAETDGFESF--SIQNSDPLRELISGEVQDSVDYRTKWR-DCS-PQIPKDDKLVDTQSQH 414
            +  + G  +     Q+ D   +  S E  D +   TKWR +C+  Q+PK+    +   Q 
Sbjct: 833  LKASAGCRTVHSETQDEDVHEDFSSEEFLDPIKSTTKWRHNCAVSQVPKESH--ELHGQD 890

Query: 415  NILDISSGFLHLAGD-SLIPETISKKCLDDAKVLHQVDKKFIPIVAGRTLAIIDQHAADE 473
             + DISSG LHL  D SL+PE+I++  L+DAKVL QVDKK+IPIVA  T+AI+DQHAADE
Sbjct: 891  GVFDISSGLLHLRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVACGTVAIVDQHAADE 950

Query: 474  RIRLEELRQKVLSGEAKSITYLDAEQEL--------------VLPEIGYQLLHNYSEQIK 519
            RIRLEELR KVL+G+A+++TYL A+QEL              VLPE+GYQLL +YSEQI+
Sbjct: 951  RIRLEELRTKVLAGKARTVTYLSADQELFINDALLIFVLTLKVLPEMGYQLLQSYSEQIR 1010

Query: 520  DWGWICNIHGQHSESFRRNLDILNRHQMAFTLIAVPCILGANLNDVDLLEYLQQLADTDG 579
            DWGWICNI  + S SF++N+ I+ R     TL AVPCILG NL+DVDLLE+LQQLADTDG
Sbjct: 1011 DWGWICNITVEGSTSFKKNMSIIQRKPTPITLNAVPCILGVNLSDVDLLEFLQQLADTDG 1070

Query: 580  SSTMPPSVIRVLNSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVN 639
            SST+PPSV+RVLNSKACRGAIMFGDSLLPSECSLI++ L+ TSLCFQCAHGRPTTVPLV+
Sbjct: 1071 SSTIPPSVLRVLNSKACRGAIMFGDSLLPSECSLIIDGLKQTSLCFQCAHGRPTTVPLVD 1130

Query: 640  LEALHNQIPKL-GRMNDYSSDKWHGLQRCEISLERAARRL 678
            L+ALH QI KL GR        WHGLQR EI+L+RA  RL
Sbjct: 1131 LKALHKQIAKLSGRQ------VWHGLQRREITLDRAKSRL 1164


>AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
           | chr4:1076306-1080510 REVERSE LENGTH=923
          Length = 923

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 39/212 (18%)

Query: 445 KVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDAEQELVLP 504
           +VL Q +  FI     R L I+DQHAADE+   E L +  +  +   +  L+ E   + P
Sbjct: 706 QVLGQFNLGFIIAKLERDLFIVDQHAADEKFNFEHLARSTVLNQQPLLQPLNLE---LSP 762

Query: 505 EIGYQLLHNYSEQIKDWGWICNIH-----GQHSESFRRNLDILNRHQMAFTLIAVPCILG 559
           E    +L  + + I++ G++   +     G+H                 F L A+P    
Sbjct: 763 EEEVTVLM-HMDIIRENGFLLEENPSAPPGKH-----------------FRLRAIPYSKN 804

Query: 560 ANLNDVDLLEYLQQLADTDGSSTMP------------PSVIR-VLNSKACRGAIMFGDSL 606
                 DL + +  L D  G  ++             PS +R +L S+ACR ++M GD L
Sbjct: 805 ITFGVEDLKDLISTLGDNHGECSVASSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPL 864

Query: 607 LPSECSLIVEELRLTSLCFQCAHGRPTTVPLV 638
             +E   IVE L      + C HGRPT   LV
Sbjct: 865 RKNEMQKIVEHLADLESPWNCPHGRPTMRHLV 896