Miyakogusa Predicted Gene

Lj2g3v1600990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1600990.1 tr|G7K187|G7K187_MEDTR MutL DNA mismatch repair
protein OS=Medicago truncatula GN=MTR_5g024250 PE=4
,80.08,0,DNA_MISMATCH_REPAIR_1,DNA mismatch repair, conserved site;
DNA MISMATCH REPAIR PROTEIN MLH3,NULL; DN,CUFF.37553.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | c...   311   4e-85
AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:58...   103   1e-22
AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putat...    92   4e-19

>AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 |
           chr4:16865488-16871527 FORWARD LENGTH=1169
          Length = 1169

 Score =  311 bits (796), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 190/238 (79%)

Query: 5   IRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYLKVVDDGGGI 64
           I+PLPE VR S+RSGI +FD+ RVVEELVFNSLDA ATKVS+FV V SC +KVVDDG G+
Sbjct: 4   IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCSVKVVDDGSGV 63

Query: 65  TRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNGYR 124
           +RD L L+GERYATSKF +  ++   S  FGFRGEALASIS++SLLE+ T+  GRPNGYR
Sbjct: 64  SRDDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNGYR 123

Query: 125 KVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLIKKSAMRLAL 184
           KV+KG KCL+LG+DDDRK+ GTTV VR+LFY+QPVRRKYMQSSP KVL+ IKK   R+AL
Sbjct: 124 KVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCVFRIAL 183

Query: 185 VHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDVENDTIKLSGY 242
           VHS++SF+V+DIE + ELF T+ +SS  SL+    G E  +SL +++V +  + +SG+
Sbjct: 184 VHSNVSFSVLDIESDEELFQTNPSSSAFSLLMRDAGTEAVNSLCKVNVTDGMLNVSGF 241


>AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 |
           chr4:5817107-5821035 REVERSE LENGTH=737
          Length = 737

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 140/261 (53%), Gaps = 37/261 (14%)

Query: 5   IRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYL-KVVDDGGG 63
           I+ L E+V + + +G  +      V+ELV NSLDA ++ +SV V  G   L +V DDG G
Sbjct: 29  IQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGHG 88

Query: 64  ITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNGY 123
           I R+ L ++ ER+ TSK     DL ++S + GFRGEALAS++ V+ + + T T G+ +GY
Sbjct: 89  IRREDLPILCERHTTSKLTKFEDLFSLS-SMGFRGEALASMTYVAHVTVTTITKGQIHGY 147

Query: 124 R---------KVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPN---KV 171
           R            K C  +           GT ++V  LFYN   RRK +Q+S +   K+
Sbjct: 148 RVSYRDGVMEHEPKACAAVK----------GTQIMVENLFYNMIARRKTLQNSADDYGKI 197

Query: 172 LQLIKKSAMRLALVHSSISFNVVDIEREAELFCTHSASSP--LSLVTSGFGLEVTSSLHQ 229
           + L+     R+A+ ++++SF+    +  A     HS  SP  L  + S +G+ V  +L +
Sbjct: 198 VDLLS----RMAIHYNNVSFSCR--KHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMK 251

Query: 230 LDVEN-D----TIKLSGYVSS 245
           ++V + D    T  + G++S+
Sbjct: 252 VEVSSCDSSGCTFDMEGFISN 272


>AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
           | chr4:1076306-1080510 REVERSE LENGTH=923
          Length = 923

 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 7/248 (2%)

Query: 4   IIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFV-NVGSCYLKVVDDGG 62
           +IRP+   V   + SG  + DL+  V+ELV NSLDA AT + + + + G  Y +V+D+G 
Sbjct: 16  LIRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGC 75

Query: 63  GITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNG 122
           GI+    +++  ++ TSK  +  DL  ++  +GFRGEAL+S+  +  L + TRT   P  
Sbjct: 76  GISPTNFKVLALKHHTSKLEDFTDLLNLT-TYGFRGEALSSLCALGNLTVETRTKNEPVA 134

Query: 123 YRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLIKKSAMRL 182
                     L       R ++GTTV VR+LF N PVR K  + +  K    +       
Sbjct: 135 TLLTFDHSGLLTAEKKTAR-QIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAY 193

Query: 183 ALVHSSISF---NVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDV-ENDTIK 238
           AL+   + F   N      ++ +  T    S    + + FG+   +SL  + +  ++  +
Sbjct: 194 ALIAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCR 253

Query: 239 LSGYVSSP 246
           + G++S P
Sbjct: 254 VEGFLSKP 261