Miyakogusa Predicted Gene

Lj2g3v1599690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1599690.1 Non Chatacterized Hit- tr|I3SLN7|I3SLN7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
no description,Ribosomal protein L5 domain; RIBOSOMAL_L5,Ribosomal
protein L5, conserved s,CUFF.37550.1
         (267 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01310.1 | Symbols:  | Ribosomal L5P family protein | chr4:54...   355   2e-98

>AT4G01310.1 | Symbols:  | Ribosomal L5P family protein |
           chr4:544166-545480 REVERSE LENGTH=262
          Length = 262

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/224 (75%), Positives = 193/224 (86%), Gaps = 1/224 (0%)

Query: 42  VKATAAGAVLVEKSEAETVFRLKRTYTEKVIPKLVEEFSYTNIHQVPKVKKIVVNCGIGE 101
           VK +A+G VLVEKSEAE   RLK  Y E++IP L EEF Y NIHQVPKV+KIVVNCGIG+
Sbjct: 38  VKVSASGTVLVEKSEAEKTQRLKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGD 97

Query: 102 AAQNAKGLDAAVNDLALITGQRPVKTRARTSVATFKIREGQPLGIAVTLRGKVMYSFLDR 161
           AAQN KGL+AA+ D+ALITGQ+P+KTRAR S+ATFKIRE QPLGIAVTLRG VMYSFLDR
Sbjct: 98  AAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDR 157

Query: 162 LVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTAET 221
           L+NL  PRTRDFQGV+ SSFDG+GN++IG+KDQGVFPEIRFD VGK RGMDVCI TTA++
Sbjct: 158 LINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKS 217

Query: 222 DKEAQRLLALLGMPFREGGGSSATAL-PKKKLKSHHFDPKAKGK 264
           D+E Q+LLAL+GMPFREGGG S  A+  KKKLKSHHFD K KGK
Sbjct: 218 DQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261