Miyakogusa Predicted Gene

Lj2g3v1574280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1574280.1 Non Chatacterized Hit- tr|I1GX86|I1GX86_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,26.96,4e-18,SUBFAMILY NOT NAMED,NULL; ZINC FINGER CW-TYPE
COILED-COIL DOMAIN PROTEIN 3.,NULL; ATPase domain of H,CUFF.37606.1
         (713 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19100.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   103   3e-22
AT4G24970.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...    96   9e-20
AT4G36280.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...    94   2e-19
AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV 1 |...    90   5e-18
AT5G50780.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...    86   1e-16
AT5G13130.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...    72   2e-12
AT5G13130.2 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...    72   2e-12
AT4G36270.1 | Symbols:  | ATP binding | chr4:17161159-17164227 R...    60   4e-09

>AT1G19100.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr1:6595560-6601159
           FORWARD LENGTH=663
          Length = 663

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 176/412 (42%), Gaps = 51/412 (12%)

Query: 185 KNLIRVDPSYLKTLGQAHSGWVFGGIAELVDNSRDA-KATKIDISVDMIKLEKSGKDVPM 243
           KN + V P +L +   +H  W FG +AEL+DN+ D  +     + VD     + G     
Sbjct: 109 KNYLHVHPMFLHSNATSHK-WAFGAVAELLDNAVDEIQNGATFVIVDKTTNPRDGATA-- 165

Query: 244 LSVIDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQTAN 303
           L + DDG GMD   +   + FG    DK     IGR+G GFKT  MRLG DV+V ++ + 
Sbjct: 166 LLIQDDGGGMDPQAMRHCMGFGFS--DKKSDSAIGRYGNGFKTSTMRLGADVIVFSRHSK 223

Query: 304 ----SRSIAFLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQSEALSKSNLKAIKEY 357
               ++SI  LS +     G D I +PI+ Y       E  T +Q      S+L  + E+
Sbjct: 224 NQTLTQSIGLLSYTYLTRTGHDRIVVPILDYEFNASAGEFKT-LQDREHFISSLSILLEW 282

Query: 358 SPFDKYLIGEKTALFS--GGSGTQIYIWNLDRWGSEYCLQWQNGLKGGSSFHQGDILIXX 415
           SPF      E    F   G  GT++ I+N+  W     L     L+        DILI  
Sbjct: 283 SPFSTE--AELLQQFDDVGPHGTKVIIYNM--W-----LNSDAKLELDFDSVAEDILIEG 333

Query: 416 XXXXXXPGQINQKVP--LDYSLRAYLEVIFL-VPR-MKMSVQGTLVKSRPLANFLTKTVI 471
                    +N  +     YSLR YL +++L +P   K+ ++G +V+   +A+ L    +
Sbjct: 334 SIKKTGSKIVNDHIASRFSYSLRVYLSILYLRIPETFKIILRGKVVEHHNVADDL----M 389

Query: 472 ETGIILGRP---------VELTLGFSQLEWEQASCGIFLYWHGRLIEAYKRVGGMIHSAX 522
               IL +P         V  T+GF +   +    G  +Y   RLI  + +V   I+ + 
Sbjct: 390 HPQYILYKPQAAGSEEALVVTTIGFLKEAPKVNLHGFCVYHKNRLIMPFWQV---INYSS 446

Query: 523 XXXXXXXXXXXSNLMDEQDGRVWVHNNKQGFQDCQSYASLEEWLGRRADQYW 574
                      +N ++         +NKQ F+       LE  L     +YW
Sbjct: 447 SRGRGVVGVLEANFVEPT-------HNKQDFEKTVLLQKLENRLKEMTVEYW 491


>AT4G24970.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr4:12831125-12835449 FORWARD LENGTH=707
          Length = 707

 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 184/417 (44%), Gaps = 49/417 (11%)

Query: 188 IRVDPSYLKTLGQAHSGWVFGGIAELVDNSRDAKATKID-ISVDMIKLEKSGKDVPMLSV 246
           +RV P +L +   +H  W  G  AEL+DN+ D  A+    + VDM++  K G    ML +
Sbjct: 162 VRVHPKFLHSNATSHK-WALGAFAELLDNALDEVASGATYVKVDMLENNKGGNR--MLLI 218

Query: 247 IDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQ------ 300
            D+G GMD +++ + +S G+    K   + IG++G GFKT  MRLG DV+V ++      
Sbjct: 219 EDNGGGMDPEKMRQCMSLGYSAKSKL-ANTIGQYGNGFKTSTMRLGADVIVFSRCPGKDG 277

Query: 301 TANSRSIAFLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQSEALSKSNLKAIKEYS 358
            ++++SI  LS +   + GK++I +P++ Y R+           +    K N++ I ++S
Sbjct: 278 KSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRDPEWSKIIRSSTRDWDK-NVETIIQWS 336

Query: 359 PFDKYLIGEKTALFSGGSGTQIYIWNLDRWGSEYCLQWQNGLKGGSSFHQGDILIXXXXX 418
           PF                GT+I I+NL  W  +     Q  L+        DI +     
Sbjct: 337 PFSSEEDLLHQFDLMKDRGTRIIIYNL--WEDD-----QGMLELDFDADPYDIQLRGVNR 389

Query: 419 XXXPGQINQKVP-------LDYSLRAYLEVIFL--VPRMKMSVQGTLVKSRPLANFLTKT 469
                ++  + P         +SLR+Y+ +++L   P  ++ ++G  V+   + N + +T
Sbjct: 390 EERNIKMASQFPNSRHFLTYKHSLRSYVSILYLRIPPGFRIILRGIDVEHHSVVNDMMQT 449

Query: 470 VIET--------GIILGRPVELTLGFSQLEWEQASC-GIFLYWHGRLIEAYKRVGGMIHS 520
              T        G++      + +GF +         G  +Y   RLI+ + R+    ++
Sbjct: 450 EQITYRPQSESYGVVTNMSAIVIIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRI---WNA 506

Query: 521 AXXXXXXXXXXXXSNLMDEQDGRVWVHNNKQGFQDCQSYASLEEWLGRRADQYWDKN 577
                        +N ++         ++KQGF+     A LE  L +    YW  N
Sbjct: 507 TGSDGRGVIGVLEANFVEPA-------HDKQGFERTTVLARLESRLVQMQKTYWSTN 556


>AT4G36280.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr4:17165513-17169277 REVERSE LENGTH=626
          Length = 626

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 161/355 (45%), Gaps = 49/355 (13%)

Query: 189 RVDPSYLKTLGQAHSGWVFGGIAELVDNSRDA-KATKIDISVDMIKLEKSGKDVPMLSVI 247
           RV P +L +   +H  W FG IAEL+DN+ D  +     + +D I + K   + P L   
Sbjct: 78  RVHPRFLHSNATSHK-WAFGAIAELLDNAVDEIQNGATFVKIDKINIVKD--NSPALVFQ 134

Query: 248 DDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQT----AN 303
           DDG GMD   + K +S G+    K     IG++G GFKT  MRLG D +V +++     +
Sbjct: 135 DDGGGMDPAGLRKCMSLGYSS--KKSNTTIGQYGNGFKTSTMRLGADAIVFSRSTRGGTS 192

Query: 304 SRSIAFLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQSEALSKSNLKAIKEYSPFD 361
           ++S+  LS +     G+D++ +P++      +R +       E  + +NL+ + ++SPF 
Sbjct: 193 TQSVGILSYTFLRKTGQDDVTVPMIDIDISKERPQPIIYGSPEDWA-ANLEILLKWSPFS 251

Query: 362 KYLIGEKTALFS--GGSGTQIYIWNLDRWGSE---YCLQWQN----------GLKGGSSF 406
                E    F   G  GT++ I+NL  W ++   Y L + +           +  G   
Sbjct: 252 TE--DELLQQFEDVGTHGTKVIIYNL--WLNDEGIYELSFDDDEEDIRLRDESVNDGKRL 307

Query: 407 HQGDILIXXXXXXXXPGQINQKVPLDYSLRAYLEVIFL--VPRMKMSVQGTLVKSRPLAN 464
           H   + +                 L YSLRAY  +++L      K+ ++G  V+   +A+
Sbjct: 308 HHKILELRSHISYH----------LRYSLRAYASMLYLKKFKNFKIIIRGIPVEQFNIAD 357

Query: 465 -FLTKTVIE----TGIILGRPVELTLGFSQLEWEQASCGIFLYWHGRLIEAYKRV 514
            F    +I+    T        E+ +GF +   + A CG  +Y   RLI  + +V
Sbjct: 358 GFRFPEIIKYKPHTATTEQASTEIKIGFVKEAPKLAICGFNVYHKNRLIRPFWKV 412


>AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV 1 |
           chr4:17169669-17173187 REVERSE LENGTH=635
          Length = 635

 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 181/420 (43%), Gaps = 69/420 (16%)

Query: 189 RVDPSYLKTLGQAHSGWVFGGIAELVDNSRD-----AKATKIDISVDMIKLEKSGKDVPM 243
           RV P +L +   +H  W FG IAEL+DN+ D     A   KID  ++++K      + P 
Sbjct: 86  RVHPKFLHSNATSHK-WAFGAIAELLDNAVDEIQNGATVVKID-KINIVK-----DNTPA 138

Query: 244 LSVIDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQTA- 302
           L   D+G GMD + + K +S G+    K     IG++G GFKT  MRLG D +V +++  
Sbjct: 139 LVFQDNGGGMDPNGIRKCMSLGYSS--KKSNTTIGQYGNGFKTSTMRLGADAMVFSRSTR 196

Query: 303 ---NSRSIAFLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQSEALSKS------NL 351
              +++SI  LS +     G+D++ +P++ +       ++ ++     +  S      NL
Sbjct: 197 GGKSTQSIGLLSYTFLRKTGQDDVIVPMIDF-------DISSDSPQPIIYGSPGDWSTNL 249

Query: 352 KAIKEYSPFDKYLIGEKTALFSGGSGTQIYIWNLDRWGSEYCLQWQNGLKGGSSFHQGDI 411
             + ++SPF   +   +     G  GT++ I+NL  W ++  +          SF   D+
Sbjct: 250 NILLKWSPFSTMVELLQQFEDIGTHGTKVIIYNL--WLNDEGIYEL-------SFDDDDV 300

Query: 412 LIXXXXXXXXPG--------QINQKVPLDY--SLRAYLEVIFL--VPRMKMSVQGTLVKS 459
            I         G        ++   +   Y  SLRAY+ +++L      K+ ++G  V  
Sbjct: 301 DIRLRDENAQDGKRLHAKTLEVRSHISYRYRHSLRAYISMLYLKKFKNFKIILRGVSVAQ 360

Query: 460 RPLANFL--TKTVI---ETGIILGRPVELTLGFSQLEWEQASCGIFLYWHGRLIEAYKRV 514
             +A+     +T++   +   +      + +GF +   +   CG  +Y   RLI  + +V
Sbjct: 361 FNIADEFRHPETIMYKPQAAAVDYAATGIKVGFIKEAPKLPICGFNVYHKNRLIRPFWKV 420

Query: 515 GGMIHSAXXXXXXXXXXXXSNLMDEQDGRVWVHNNKQGFQDCQSYASLEEWLGRRADQYW 574
              +               +N ++         ++KQ F+    +  LE  L R    YW
Sbjct: 421 ---VLEGSTRGNGVMGVLEANFIEPA-------HDKQDFERSSLFLRLEARLKRITSDYW 470


>AT5G50780.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr5:20650269-20654948 FORWARD LENGTH=819
          Length = 819

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 18/209 (8%)

Query: 188 IRVDPSYLKTLGQAHSGWVFGGIAELVDNSRD-AKATKIDISVDMIKLEKSGKDVPMLSV 246
           +RV P +L +   +H  W  G  AEL+DN+ D  ++    ++VDMI+  K G    M+ +
Sbjct: 153 VRVHPKFLHSNATSHK-WSLGAFAELLDNALDEVRSGATFVNVDMIQNRKDGSK--MILI 209

Query: 247 IDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQ------ 300
            D+G GM+ +++   +S G+    K   D IG++G GFKT  MRLG DV+V ++      
Sbjct: 210 EDNGGGMNPEKMRHCMSLGYSAKSKL-ADTIGQYGNGFKTSTMRLGADVIVFSRCLGKDG 268

Query: 301 TANSRSIAFLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQSEALSKSNLKAIKEYS 358
            ++++SI  LS +   + GK++I +P++ Y R+       T        K N++ + ++S
Sbjct: 269 KSSTQSIGLLSYTFLKSTGKEDIVVPMLDYERRDSEWCPITRSSVSDWEK-NVETVVQWS 327

Query: 359 PF--DKYLIGEKTALFSGGSGTQIYIWNL 385
           P+  ++ L+ +   +     GT+I I+NL
Sbjct: 328 PYATEEELLCQFNLMKK--HGTRIIIYNL 354


>AT5G13130.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr5:4166755-4170324
           FORWARD LENGTH=708
          Length = 708

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 176/418 (42%), Gaps = 55/418 (13%)

Query: 188 IRVDPSYLKTLGQAHSGWVFGGIAELVDNSRDAKATKID-ISVDMIKLEKSGKDVPMLSV 246
           +RV P +L     +H  W  G +AEL+DNS D  +     + VD    ++ GK   +L V
Sbjct: 100 VRVHPQFLHANATSHK-WALGALAELLDNSLDEVSNGATYVHVDSTINKRDGKS-SILIV 157

Query: 247 IDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQTAN--- 303
            D+G GM+     + +S G+ +  ++  + +G++G GFKT  MRLG D +V +++     
Sbjct: 158 EDNGGGMNPSTFRECLSLGYSR-KRNMANRVGQYGNGFKTSTMRLGADAIVFSRSRGING 216

Query: 304 ---SRSIAFLSQSLNEGKDNIE--IPIVSYRRQGQR-MEVDTNVQSEALSKSNLKAIKEY 357
              ++SI  LS +        E  +P V Y     +  E+  N  +E L   NL+ I  +
Sbjct: 217 NNPTQSIGMLSYTFLYETRKCEAIVPTVDYELVDNKWKEIVYNSTNEWL--DNLETILRW 274

Query: 358 SPF--DKYLIGEKTALFSGGSGTQIYIWNLDRWGSEYCLQWQNGLKGGSSFHQGDILIXX 415
           SP+   + L+ +   L     GT+I I+NL  W  +   + +  L   +  H  DI +  
Sbjct: 275 SPYLSQQDLLDQFNHLEE--QGTRIVIYNL--WEDD---EGKMELDFDTDPH--DIQLRG 325

Query: 416 XXXXXXPGQINQKVP-------LDYSLRAYLEVIFLV--PRMKMSVQGTLVKSRPLANFL 466
                    + +  P         +SLR+Y  +++L      ++ ++G  V+   + + +
Sbjct: 326 VNRDEKNIDMAKTYPNSRHFLTYRHSLRSYASILYLKRPDNFRIILRGEDVEHHSVLDDM 385

Query: 467 TKTVIETGIILGRP---------VELTLGFSQLEWEQASC-GIFLYWHGRLIEAYKRVGG 516
            K   +T   +  P           L LGF +         G  +Y   RLI+ + RV  
Sbjct: 386 MKIEEKTYKPMRSPEWPDQEEMVASLKLGFVKDAHHHIDIQGFNVYHKNRLIKPFWRVW- 444

Query: 517 MIHSAXXXXXXXXXXXXSNLMDEQDGRVWVHNNKQGFQDCQSYASLEEWLGRRADQYW 574
             ++A            +N +          +NKQGF+     A LE  L      YW
Sbjct: 445 --NAAGSDGRGVIGILEANFIQPA-------HNKQGFERTVVLAKLESRLVTHQKNYW 493


>AT5G13130.2 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr5:4166755-4170324
           FORWARD LENGTH=696
          Length = 696

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 19/210 (9%)

Query: 188 IRVDPSYLKTLGQAHSGWVFGGIAELVDNSRDAKATKID-ISVDMIKLEKSGKDVPMLSV 246
           +RV P +L     +H  W  G +AEL+DNS D  +     + VD    ++ GK   +L V
Sbjct: 100 VRVHPQFLHANATSHK-WALGALAELLDNSLDEVSNGATYVHVDSTINKRDGKS-SILIV 157

Query: 247 IDDGQGMDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQTAN--- 303
            D+G GM+     + +S G+ +  ++  + +G++G GFKT  MRLG D +V +++     
Sbjct: 158 EDNGGGMNPSTFRECLSLGYSR-KRNMANRVGQYGNGFKTSTMRLGADAIVFSRSRGING 216

Query: 304 ---SRSIAFLSQSLNEGKDNIE--IPIVSYRRQGQR-MEVDTNVQSEALSKSNLKAIKEY 357
              ++SI  LS +        E  +P V Y     +  E+  N  +E L   NL+ I  +
Sbjct: 217 NNPTQSIGMLSYTFLYETRKCEAIVPTVDYELVDNKWKEIVYNSTNEWL--DNLETILRW 274

Query: 358 SPF--DKYLIGEKTALFSGGSGTQIYIWNL 385
           SP+   + L+ +   L     GT+I I+NL
Sbjct: 275 SPYLSQQDLLDQFNHLEE--QGTRIVIYNL 302


>AT4G36270.1 | Symbols:  | ATP binding | chr4:17161159-17164227
           REVERSE LENGTH=486
          Length = 486

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 168/416 (40%), Gaps = 102/416 (24%)

Query: 253 MDHDEVVKMVSFGHKQLDKDDKDHIGRFGVGFKTGAMRLGRDVLVLTQTA----NSRSIA 308
           MD D + K +S G+    K     IG++G GFKT  MRLG D +V T++     +++S+ 
Sbjct: 1   MDPDGLRKCMSLGYS--SKKSNTTIGQYGNGFKTSTMRLGADDIVFTRSTRGGKSTQSVG 58

Query: 309 FLSQSL--NEGKDNIEIPIVSYRRQGQRMEVDTNVQ--------SEALSKSNLKAIKEYS 358
            LS +     G+D++ +P++ Y  Q   +++DT+ +        S     ++L+ I ++S
Sbjct: 59  LLSYTFLRKTGQDDVVVPMIRYAMQ---IDIDTSKERPQPIIYGSAEDWAASLEIILKWS 115

Query: 359 PF--DKYLIGEKTALFS-------------GGSGTQIYIWNLDRWGSEYCLQWQN--GLK 401
           PF  +  L  +++ L +             G  GT++ I+NL          W N  G+ 
Sbjct: 116 PFSTEGELWQQRSVLLTFLFPSSTHQLEDIGTHGTKVIIYNL----------WLNDEGIY 165

Query: 402 GGSSFHQGDILIXXXXXXXXPGQINQKVPLDYSLRAYLEVIFL--VPRMKMSVQGTLVKS 459
              SFH  +  I                 +  S RAY  +++L      K+ ++G  V+ 
Sbjct: 166 -ELSFHDDNEDIRLRDES-----------VHDSKRAYASMLYLKRFNNFKIILRGIPVEQ 213

Query: 460 RPLANFL---------TKTVIETGIILGRPVELTLGFSQLEWEQASCGIFLYWHGRLIEA 510
             +A+ L           T  E       P E+ +GF +   + A CG  +Y   RLI  
Sbjct: 214 FNIADELRLPETIKYNPHTTKEKA-----PTEIKVGFIKEAPKLAVCGFNVYHKNRLIRP 268

Query: 511 YKRVGGMIHSAXXXXXXXXXXXXSNLMDEQDGRVWVHNNKQGFQDCQSYASLEEWLGRRA 570
           + +V                   +N ++         ++KQ F+    +  LE  L +  
Sbjct: 269 FWKV---TMGGERRGSGVVGVLEANFIEPA-------HDKQDFERSSLFQRLEARLKKIV 318

Query: 571 DQYWDKNFDSLELDKGNCVYKPDCEWVQCDKCRKWRILPPD-------FDSMSLPT 619
             YW+ +        G C Y      +  DK +  RI  PD       F+ + LP+
Sbjct: 319 SNYWNTHCHVF----GYCTYG-----MPADKSK--RIAIPDQPPTVNTFNPLPLPS 363