Miyakogusa Predicted Gene

Lj2g3v1561960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1561960.1 tr|Q8LP14|Q8LP14_PEA Nine-cis-epoxycarotenoid
dioxygenase4 OS=Pisum sativum GN=nced4 PE=2
SV=1,82.9,0,RPE65,Carotenoid oxygenase; 9-CIS-EPOXYCAROTENOID
DIOXYGENASE,NULL; BETA-CAROTENE DIOXYGENASE,Carote,CUFF.37529.1
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid di...   420   e-118
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epo...   219   2e-57
AT1G30100.1 | Symbols: NCED5, ATNCED5 | nine-cis-epoxycarotenoid...   207   4e-54
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid...   201   4e-52
AT4G18350.1 | Symbols: NCED2, ATNCED2 | nine-cis-epoxycarotenoid...   197   4e-51
AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid...   196   1e-50
AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid...   157   7e-39

>AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid
           dioxygenase 4 | chr4:10481835-10483622 FORWARD
           LENGTH=595
          Length = 595

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 193/272 (70%), Positives = 232/272 (85%), Gaps = 3/272 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           MLHA++I  G+ATLCSRYVKTYKY +E   G P++PNVFSGFN + AS ARG+LTAARV+
Sbjct: 165 MLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTASVARGALTAARVL 224

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            GQYNP NGIGLANTSLA F N+L+ALGESDLPY +R+  +GDIET+GR DFDGKL MSM
Sbjct: 225 TGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSM 284

Query: 121 TAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKKY 180
           TAHPK DP +GE FAFRYGPVPPFLTYFRFD  GKK  DVP+FSMT PSFLHDFAITK++
Sbjct: 285 TAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRH 344

Query: 181 AIFTDIQLG--MNPLDMI-SGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVH 237
           AIF +IQLG  MN LD++  GGSP+G+D  K  R+G++P+YA DESEMKWF+VPGFNI+H
Sbjct: 345 AIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIH 404

Query: 238 AINAWEEEDGKTVTLVAPNILSVEHTMERLEL 269
           AINAW+E+DG +V L+APNI+S+EHT+ER++L
Sbjct: 405 AINAWDEDDGNSVVLIAPNIMSIEHTLERMDL 436


>AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 |
           nine-cis-epoxycarotenoid dioxygenase 3 |
           chr3:4831678-4833477 REVERSE LENGTH=599
          Length = 599

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/254 (42%), Positives = 152/254 (59%), Gaps = 3/254 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           M+HA++   G A+   R+ +T ++  E   G P+ P      +      AR  L  AR  
Sbjct: 176 MVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTG-IARLMLFYARAA 234

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
           AG  +PA+G G+AN  L  F  +L A+ E DLPY+++I  NGD++T+GR DFDG+L  +M
Sbjct: 235 AGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTM 294

Query: 121 TAHPKIDPDSGECFAFRYGPVP-PFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKK 179
            AHPK+DP+SGE FA  Y  V  P+L YFRF PDG K PDV +  + +P+ +HDFAIT+ 
Sbjct: 295 IAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPDVEI-QLDQPTMMHDFAITEN 353

Query: 180 YAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAI 239
           + +  D Q+     +MI GGSP+  D  KV+R GIL +YA D S +KW D P     H  
Sbjct: 354 FVVVPDQQVVFKLPEMIRGGSPVVYDKNKVARFGILDKYAEDSSNIKWIDAPDCFCFHLW 413

Query: 240 NAWEEEDGKTVTLV 253
           NAWEE +   V ++
Sbjct: 414 NAWEEPETDEVVVI 427


>AT1G30100.1 | Symbols: NCED5, ATNCED5 | nine-cis-epoxycarotenoid
           dioxygenase 5 | chr1:10571383-10573152 FORWARD
           LENGTH=589
          Length = 589

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/254 (41%), Positives = 151/254 (59%), Gaps = 3/254 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           M+HA++I+ G A+   R+ +T +   E   G P+ P      +   +  AR  L  AR +
Sbjct: 166 MVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGH-SGIARLMLFYARGL 224

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            G  N  NG G+AN  L  F ++L A+ E DLPY++R+ +NGD+ET+GR DFDG+L+ +M
Sbjct: 225 FGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAM 284

Query: 121 TAHPKIDPDSGECFAFRYGPV-PPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKK 179
            AHPKIDP + E FA  Y  V  P+L YF+F P+G+K PDV +  +  P+ +HDFAIT+ 
Sbjct: 285 IAHPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEI-PLASPTMMHDFAITEN 343

Query: 180 YAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAI 239
           + +  D Q+     DM  G SP+  D  K+SR GILPR A+D SEM W + P     H  
Sbjct: 344 FVVIPDQQVVFKLSDMFLGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLW 403

Query: 240 NAWEEEDGKTVTLV 253
           NAWE  +   V ++
Sbjct: 404 NAWESPETDEVVVI 417


>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid
           cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD
           LENGTH=538
          Length = 538

 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/249 (43%), Positives = 147/249 (59%), Gaps = 8/249 (3%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNV--FSGFNTLVASAARGSLTAAR 58
           M+H +RI  G+AT  SRYVKT + K E   G      +    GF  L+    +   T  +
Sbjct: 102 MIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLK 161

Query: 59  VIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTM 118
           ++   Y    G G ANT+L     KL AL E+D PY I++  +GD++TLG  D+D +LT 
Sbjct: 162 ILDNTY----GNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTH 217

Query: 119 SMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITK 178
           S TAHPK+DP +GE F F Y   PP+LTY     DG  H  VP+ +++ P  +HDFAIT+
Sbjct: 218 SFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPI-TISEPIMMHDFAITE 276

Query: 179 KYAIFTDIQLGMNPLDMISGGSPIGS-DPAKVSRIGILPRYARDESEMKWFDVPGFNIVH 237
            YAIF D+ +   P +M+     I S DP K +R G+LPRYA+DE  ++WF++P   I H
Sbjct: 277 TYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFH 336

Query: 238 AINAWEEED 246
             NAWEEED
Sbjct: 337 NANAWEEED 345


>AT4G18350.1 | Symbols: NCED2, ATNCED2 | nine-cis-epoxycarotenoid
           dioxygenase 2 | chr4:10142672-10144423 FORWARD
           LENGTH=583
          Length = 583

 Score =  197 bits (502), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 150/255 (58%), Gaps = 3/255 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           M+HA++I+ G A+   R+ KT +   E   G P+ P      +   +  AR  L  AR +
Sbjct: 159 MVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGH-SGIARLMLFYARGL 217

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            G  N  NG+G+AN  L  F N+L A+ E DLPY+++I   GD++T+GR DFDG+L  +M
Sbjct: 218 CGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAM 277

Query: 121 TAHPKIDPDSGECFAFRYGPV-PPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKK 179
            AHPK+DP + E  A  Y  V  P+L YFRF PDG K P++ +  +  P+ +HDFAIT+ 
Sbjct: 278 IAHPKLDPVTKELHALSYDVVKKPYLKYFRFSPDGVKSPELEI-PLETPTMIHDFAITEN 336

Query: 180 YAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAI 239
           + +  D Q+     +MISG SP+  D  KVSR+GI+P+ A + S++ W + P     H  
Sbjct: 337 FVVIPDQQVVFKLGEMISGKSPVVFDGEKVSRLGIMPKDATEASQIIWVNSPETFCFHLW 396

Query: 240 NAWEEEDGKTVTLVA 254
           NAWE  + + + ++ 
Sbjct: 397 NAWESPETEEIVVIG 411


>AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid
           dioxygenase 9 | chr1:29490895-29492868 REVERSE
           LENGTH=657
          Length = 657

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 145/255 (56%), Gaps = 3/255 (1%)

Query: 1   MLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVI 60
           M+HA+R   G  +   R+ +T +   E + G P+ P      +  +   A+  L   R +
Sbjct: 236 MVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLG-IAKLMLFNTRGL 294

Query: 61  AGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSM 120
            G  +P  G+G+AN  L  F   L A+ E DLPY +++   GD+ET GR DFDG+L  +M
Sbjct: 295 FGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTM 354

Query: 121 TAHPKIDPDSGECFAFRYGPVP-PFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKK 179
            AHPKIDP++ E FA  Y  V  P+L YFRF  DG+K PDV +  + +P+ +HDFAIT+ 
Sbjct: 355 IAHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEI-PLDQPTMIHDFAITEN 413

Query: 180 YAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAI 239
           + +  D Q+     +MI GGSP+  D  K SR GIL + A+D S ++W +VP     H  
Sbjct: 414 FVVIPDQQVVFRLPEMIRGGSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLW 473

Query: 240 NAWEEEDGKTVTLVA 254
           N+WEE +   V ++ 
Sbjct: 474 NSWEEPETDEVVVIG 488


>AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid
           dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577
          Length = 577

 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 149/285 (52%), Gaps = 13/285 (4%)

Query: 1   MLHALRIS-QGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARV 59
           M+HA+ I    + +   RY KT +   E   G  + P      +   +  AR +L  AR 
Sbjct: 154 MIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGH-SGLARLALFTARA 212

Query: 60  IAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMS 119
             G  +   G+G+AN  +  F  +L A+ E DLPY+++I   GD+ET+GR  FD ++  S
Sbjct: 213 GIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSS 272

Query: 120 MTAHPKIDPDSGECFAFRYGPV-PPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITK 178
           + AHPK+D  +G+     Y  +  P L Y +F+  GKK  DV + ++  P+ +HDFAIT+
Sbjct: 273 VIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEI-TLPEPTMIHDFAITE 331

Query: 179 KYAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHA 238
            + +  D Q+     +MI GGSP+     K++R G+L +     S++ W DVP     H 
Sbjct: 332 NFVVIPDQQMVFKLSEMIRGGSPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCFCFHL 391

Query: 239 INAWEE--EDGKTVTLVAPNILSVEHTM-------ERLELGKRRM 274
            NAWEE  E+G  V +V  + +S   T+        R+EL + R+
Sbjct: 392 WNAWEERTEEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIRL 436