Miyakogusa Predicted Gene

Lj2g3v1560830.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1560830.2 Non Chatacterized Hit- tr|F4PQC8|F4PQC8_DICFS
Putative uncharacterized protein OS=Dictyostelium
fasc,31.13,8e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; N-terminal domain of CBF1 interacting co-,CUFF.37486.2
         (617 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19190.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...   461   e-130

>AT4G19190.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:10493323-10495969 FORWARD LENGTH=595
          Length = 595

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/307 (71%), Positives = 250/307 (81%), Gaps = 9/307 (2%)

Query: 1   MEGE-EGGGIRLSKRFSDDNKGGAGSEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKW 59
           M+GE EG GIRLSKRF+     G   EVDYKTKSGTAWSHS+LNQKPWHPLSYPNQRRKW
Sbjct: 1   MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKW 60

Query: 60  IAEQTHANRERRTEEVAREYAQEQEFYRQTNLISKKDKEKVELMQAVSFMYVRPPGYNAE 119
           IAEQTHA  +RR EEVARE+AQEQEF++Q  LISKK++EK+E M+AVSFMYVRPPGY+ E
Sbjct: 61  IAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPE 120

Query: 120 SAKAAEMNDQ------TKREEMTSETNADAXXXXXXXXXRVNDEKKKRRPKDVFGRTLPT 173
           SAKAAE  D+      +  ++  ++ N  +             E+KK RPKDVFGR LPT
Sbjct: 121 SAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPT 180

Query: 174 EEEFKVLKNAPKLETGVAGRAKPFGVEVRNVKCLRCGSYGHQSGDRECPLKDSIMPNEES 233
           EEEF+VLKNAP++ETG+ GR KPF VEVRNVKCLRCG++GHQSGDR+CPLKD++MPNEE 
Sbjct: 181 EEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEEL 240

Query: 234 RLKRDDPLNAIIAHTDPTEPLKWELKQKPGISPPRGGFKPDDPNQQIVAADDIFDEYGGF 293
           RLKRDDPL AIIAHTDP+EPLKWELKQKPG+SPPRGGF PDDPNQQIV A+DIFDEYGGF
Sbjct: 241 RLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIV-AEDIFDEYGGF 299

Query: 294 LNMDSIP 300
           L   SIP
Sbjct: 300 LE-GSIP 305