Miyakogusa Predicted Gene

Lj2g3v1560800.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1560800.2 Non Chatacterized Hit- tr|I3STJ0|I3STJ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.17,0,F-box-like,NULL; Herpes_UL92,Herpesvirus UL92; A Receptor
for Ubiquitination Targets,F-box domain, c,CUFF.37487.2
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45360.1 | Symbols:  | F-box family protein | chr5:18384783-1...   369   e-102

>AT5G45360.1 | Symbols:  | F-box family protein |
           chr5:18384783-18386670 REVERSE LENGTH=316
          Length = 316

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/328 (57%), Positives = 229/328 (69%), Gaps = 12/328 (3%)

Query: 1   MTLSDDEDENLAQFLESEVLSEVSDKEEENLEEPKAKRKRIEEAESTKQGQGTKQISAPL 60
           M++SD+EDE  A+FLESEV S V DKEE   +EP+AKR+RIE+ E       TK +    
Sbjct: 1   MSVSDEEDECFARFLESEV-SSVEDKEE--TKEPEAKRQRIEKGE-------TKALEKDE 50

Query: 61  SEPENYGVNNGVVPKRIETGFFSKIPPELFHHILKFLSSEDLISCSAVCTFLNYAASDEA 120
            + EN G  +    KRIE+G F+ +P ELF HILKFLSSEDL+SCS VC FLN+AA+DE+
Sbjct: 51  DQKEN-GNKDKTDAKRIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADES 109

Query: 121 LWRRLYCMRWGLLPPTRKLRECPWKNLYIQRDGDDMVELVRNCQNEFKEYYIQMQAAKRS 180
           LWRRLYC+RWGL  P+RKLRE  WK LYI RD  DM+ELVR C ++FKEYY+ MQAAKRS
Sbjct: 110 LWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRS 169

Query: 181 QAPNPSQLNDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYAIGDVFICEK 240
           QAP PSQ+ DDRIILD T+ +QVS WK S+GL+D  VT H C G  CSY+ I DVFIC++
Sbjct: 170 QAPLPSQMVDDRIILDNTVLEQVSLWKKSKGLTDKAVTGHICLGTKCSYHQIDDVFICKE 229

Query: 241 TGQVHVCDETCREVVMDPTNELLVCTISGHCFDRLLSPAEMXXXXXXXXXXXXXXXXXFM 300
           TG VHVCD+ C+EV++ P  +L+VCTISG C D LL   E                  F 
Sbjct: 230 TGNVHVCDDNCKEVILSPEGDLMVCTISGVCSDTLLVQTE-PDADGCYEEEAELEAEVFT 288

Query: 301 GSGRFARAYLLGYNCADEKELEATLRFC 328
              R ARA+ LGYNC DE+ELE TLRFC
Sbjct: 289 DKSRLARAFELGYNCDDEQELERTLRFC 316