Miyakogusa Predicted Gene
- Lj2g3v1550550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1550550.1 Non Chatacterized Hit- tr|A9NLK8|A9NLK8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.29,2e-16,DUF1218,Protein of unknown function DUF1218;
seg,NULL,CUFF.37452.1
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31720.1 | Symbols: | Protein of unknown function (DUF1218) ... 128 3e-30
AT4G19370.1 | Symbols: | Protein of unknown function (DUF1218) ... 115 2e-26
>AT1G31720.1 | Symbols: | Protein of unknown function (DUF1218) |
chr1:11356169-11356960 FORWARD LENGTH=194
Length = 194
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
Query: 38 KKEDLRWNGKLCYLPSSQAFGLGIAALVSFFVAQVIVNSILFKNSCSGGKRNAQHKIPTV 97
K +DL+W+G+ CYLP ++AFGLGIAALV VAQ++ N ++ C G + + +
Sbjct: 52 KGKDLKWDGESCYLPENRAFGLGIAALVCVSVAQIVGNVVI----CRGFTKTDKTRTTIF 107
Query: 98 ARLLLLISWVGFGVAVILLITATSMNRRQPYGLGWLNGECYLVKEGTYAGSAILILVTIS 157
+LLL SWV F VAV L+ SMNR Q YG GWLN ECYLVK+G +A S L + T++
Sbjct: 108 CIILLLFSWVNFAVAVTLISVGASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMA 167
Query: 158 SVIGSALLTIKTN-QADQGRKIHT 180
+++G+ +K + Q + K HT
Sbjct: 168 AILGAFAFKVKPSLQVENHDKRHT 191
>AT4G19370.1 | Symbols: | Protein of unknown function (DUF1218) |
chr4:10566263-10567535 REVERSE LENGTH=217
Length = 217
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 15/162 (9%)
Query: 32 SEFKRNKKEDLRWNGKL-CYLPSSQAFGLGIAALVSFFVAQVIVNSILFKNSCSGGKRNA 90
+EFKR +KED+RW+ + CY+P S AFGLG AA++ F +AQ++ N ++F+N + KR
Sbjct: 24 AEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIVGNIVVFRNHRTRTKRED 83
Query: 91 QHKIPTVARLLLLI--SWVGFGVAVILLITATSMNRRQPYGLGWLNGECYLVKEGTYAGS 148
+KI + +L+ SW F V V++L TA SM+R Q YG GWL+ +CYLVK+G +A S
Sbjct: 84 GYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAYGEGWLDEDCYLVKDGVFAAS 143
Query: 149 AILILVTISSVIGSAL------------LTIKTNQADQGRKI 178
L ++ + ++ SA + IK DQ R +
Sbjct: 144 GCLAILGLGALTISATRIKVKKQQQLVQVVIKDQNQDQRRSM 185