Miyakogusa Predicted Gene

Lj2g3v1550550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550550.1 Non Chatacterized Hit- tr|A9NLK8|A9NLK8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.29,2e-16,DUF1218,Protein of unknown function DUF1218;
seg,NULL,CUFF.37452.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31720.1 | Symbols:  | Protein of unknown function (DUF1218) ...   128   3e-30
AT4G19370.1 | Symbols:  | Protein of unknown function (DUF1218) ...   115   2e-26

>AT1G31720.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr1:11356169-11356960 FORWARD LENGTH=194
          Length = 194

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 5/144 (3%)

Query: 38  KKEDLRWNGKLCYLPSSQAFGLGIAALVSFFVAQVIVNSILFKNSCSGGKRNAQHKIPTV 97
           K +DL+W+G+ CYLP ++AFGLGIAALV   VAQ++ N ++    C G  +  + +    
Sbjct: 52  KGKDLKWDGESCYLPENRAFGLGIAALVCVSVAQIVGNVVI----CRGFTKTDKTRTTIF 107

Query: 98  ARLLLLISWVGFGVAVILLITATSMNRRQPYGLGWLNGECYLVKEGTYAGSAILILVTIS 157
             +LLL SWV F VAV L+    SMNR Q YG GWLN ECYLVK+G +A S  L + T++
Sbjct: 108 CIILLLFSWVNFAVAVTLISVGASMNREQIYGKGWLNRECYLVKDGVFAASGFLSVTTMA 167

Query: 158 SVIGSALLTIKTN-QADQGRKIHT 180
           +++G+    +K + Q +   K HT
Sbjct: 168 AILGAFAFKVKPSLQVENHDKRHT 191


>AT4G19370.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr4:10566263-10567535 REVERSE LENGTH=217
          Length = 217

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 15/162 (9%)

Query: 32  SEFKRNKKEDLRWNGKL-CYLPSSQAFGLGIAALVSFFVAQVIVNSILFKNSCSGGKRNA 90
           +EFKR +KED+RW+ +  CY+P S AFGLG AA++ F +AQ++ N ++F+N  +  KR  
Sbjct: 24  AEFKRTQKEDIRWDTERNCYVPGSHAFGLGSAAVLCFCLAQIVGNIVVFRNHRTRTKRED 83

Query: 91  QHKIPTVARLLLLI--SWVGFGVAVILLITATSMNRRQPYGLGWLNGECYLVKEGTYAGS 148
            +KI  +    +L+  SW  F V V++L TA SM+R Q YG GWL+ +CYLVK+G +A S
Sbjct: 84  GYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAYGEGWLDEDCYLVKDGVFAAS 143

Query: 149 AILILVTISSVIGSAL------------LTIKTNQADQGRKI 178
             L ++ + ++  SA             + IK    DQ R +
Sbjct: 144 GCLAILGLGALTISATRIKVKKQQQLVQVVIKDQNQDQRRSM 185