Miyakogusa Predicted Gene

Lj2g3v1550430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550430.1 Non Chatacterized Hit- tr|F6HJ31|F6HJ31_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,55.34,2e-18,coiled-coil,NULL; seg,NULL,CUFF.37437.1
         (351 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45310.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...   214   8e-56

>AT5G45310.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; EXPRESSED IN: stem, inflorescence meristem,
           root, leaf; EXPRESSED DURING: LP.04 four leaves visible;
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:18359373-18360796
           REVERSE LENGTH=352
          Length = 352

 Score =  214 bits (545), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 135/351 (38%), Positives = 203/351 (57%), Gaps = 40/351 (11%)

Query: 2   ALISELLTNVILLVTRAFSLLKLVCLFGIRTTLILFSTWTELIRTTISFNVNIILRII-- 59
            LIS L+++ + L+TR F      C+F +RT L+     T+++ + I FN++++ R +  
Sbjct: 5   GLISGLVSSSLYLMTRPFFFCIYACVFCLRTALVTTFVSTDMVTSAIWFNLSMLWRAVRG 64

Query: 60  -TW-TFGLISLPARLVNSFQRERQLEGKLCQMQIELENLQWDRKKLQEHFQMVVKECKMM 117
             W +  L + P R   S  RER LE  +  ++ ELE+L+W+RK+++++ +  +KE ++M
Sbjct: 65  SIWGSVLLFTFPIRFFASIPRERLLEQSIYDLRYELESLEWNRKEIEKNLREAIKEYRIM 124

Query: 118 XXXXXXXXXXHDMAIAKIEKLEGKLRDQINENLRLKEIQGKGYWSSKDQSKTDIS----Q 173
                     HD AI+KIEKLE +L++   ENL+L E+ GK Y S K + K        +
Sbjct: 125 EQDLDELEDEHDEAISKIEKLEAELQELKEENLQLMEVNGKDYRSKKGKVKPSEEPSEIR 184

Query: 174 DIDQPI-LSWKSSYSGALQDLLMHKDSWEDDXXXXXXXXXXXXXGPKSGSVPQVKPEMIS 232
            I +P  + + S        +                         KS   P  K   I 
Sbjct: 185 SIHKPKNIPYASKGKAEFTSV-------------------------KSPLYPFAK-STIP 218

Query: 233 KNVELA---LDHSRDVALSQSLFSAILSLVVGITVWEAEDP--CMPLVVALFTVVGMSLK 287
           K+ EL    L   +++A+S+S+FSA+L+LVVGI ++EA++   C PL+ ALFTVVG+SLK
Sbjct: 219 KDEELTPRVLGLEKNIAVSRSVFSAMLALVVGIVMYEAKEQELCTPLIGALFTVVGISLK 278

Query: 288 SVVQFFFTIRNKPASDAVALLSLNWFILGTLSYPTLPRVATMLSPLVLRFV 338
           SVVQFF T++NKPA DAVAL+SLNWFI+GTL+YPTLPRVA ++ P V   V
Sbjct: 279 SVVQFFSTVKNKPALDAVALMSLNWFIVGTLTYPTLPRVARIVVPRVFNTV 329